BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G80420.1
Length=1510
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927464 jgi|Araly1|927464|scaffold_203025.1 1487 0.0
> Ahg927464 jgi|Araly1|927464|scaffold_203025.1
Length=1116
Score = 1487 bits (805), Expect = 0.0
Identities = 1022/1120 (91%), Gaps = 41/1120 (4%)
Strand=Plus/Plus
Query 212 TGTAAAGGACAAGATGTCTCAGAAGCGAAATCTTCCTTCTTGGATGAGTTCTAGGGATCC 271
|||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||
Sbjct 13 TGTAAAGGACAAGATGTCCCATAAGCGAAATCTTCCTTCTTGGATGAGTTCAAGGGATCC 72
Query 272 -CGAGATTACTCCGAGTAAGTCTCATTGTAAGAAGCCTAAGGATGAAGGACCAACCGAAG 330
| | | || |||| ||||||||||||||||||||||||||||| ||||
Sbjct 73 TC-AAACTAGTCCGGGTAAGTCTCATTGTAAGAAGCCTAAGGAT------------GAAG 119
Query 331 AGCACAACAGTAGAAATGCCCCTTCCAACAAGTCAGAACACGCCGAGCCAAGTTCAAATA 390
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 120 AGCACAACAGCAGAAATGCCCCTTCCAACAAGTCAGAACACGCTGAGCCAAGTTCAAGTA 179
Query 391 CCACTGAATTCTCTAAACTTATGGAAGGCGTTGTTTTTGTACTTTCGGGCTTTGTTAATC 450
|||| ||||||||||||||||||||||| ||||||||||| || ||||| ||||||||||
Sbjct 180 CCACGGAATTCTCTAAACTTATGGAAGGAGTTGTTTTTGTGCTGTCGGGTTTTGTTAATC 239
Query 451 CTGAGAGGAGTACACTGAGGTCACAAGCCTTGACAATGGGAGCCACCTATCAACCTGACT 510
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 240 CTGAGAGGAGTACACTGAGGTCACAGGCCTTGACAATGGGAGCCACCTATCAACCTGACT 299
Query 511 GGAACGCTGGCTCTACCTTGTTGATTTGTGCTTTTCCTAACACTCCAAAGTTCCGTCAAG 570
||||| ||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 300 GGAACTCTGACTCTACCTTGTTGATCTGTGCTTTTCCCAACACTCCAAAGTTCCGTCAAG 359
Query 571 TTGAAACAAATGGTGGAACAATTA-TCTCAAAGGAGTGGATAACTGAGTGTTATGCGCAG 629
||||||||||||| ||||||| || |||||||||| |||||||||||||||||| |||||
Sbjct 360 TTGAAACAAATGGGGGAACAA-TAGTCTCAAAGGATTGGATAACTGAGTGTTATACGCAG 418
Query 630 AAGAAGTTGGTAGATATCGAGCAATACCTTATGCATGCTGGAAAACCATGGAGGAAAAGC 689
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 AAGAAGTTGGTGGATATTGAGCAATACCTTATGCATGCTGGAAAACCATGGAGGAAAAGC 478
Query 690 AGTAG-TCCCCAAGATGCTAATCGAGAAAAGAGAGAACACCTGTCTAAAAAACCAGAGAA 748
| | | || ||| |||||| || |||||| || |||||||||||||||||||||||||
Sbjct 479 AAT-GTTCGTCAAAATGCTATTCAAGAAAATAGCCAACACCTGTCTAAAAAACCAGAGAA 537
Query 749 GCAAGTAGAGaaaaaaaCAGAAACAAGGGGAACACCATCTACCTCATCCAAGAATAGATC 808
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 538 GCAAGTAGAGAAAAAAACAGAAACAAGGGGAACTCCATCTACCTCATCCAAGAATAGATC 597
Query 809 AGCTTGCAATCTTGTGAAAGAGCCATTTTTTGTTACAGAGGTGAAGAAATGGGCCAGGGA 868
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 598 AGCTTGCAATCTTGTGAAAGAGCCATTTTCTGTTACAGAGGTGAAGAAATGGGCCAGGGA 657
Query 869 TGACCTAAGTCAAACCATCTCATGGCTTGAGAGTCAGGAGGAAAAACCAGAACCAGGCGA 928
|||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 658 TGACCTAACTCAAACCATCTCATGGCTTGAGAGTCAGGAGGAGAAGCCAGAACCAGGCGA 717
Query 929 AATCAAGCGAATAGCTGCGGAAGGAGTCTTAACCTGCTTACAAGACGCCATAGATTCTCT 988
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 718 AATCAAGCGAATAGCTGCTGAAGGAGTCTTAACCTGCTTACAAGACGCCATAGAGTCTCT 777
Query 989 TGAACAGAAGCAGGACATTGGATCAGTTACAGAGCTATGGAGCTTTGTCCCTCGTGTAGT 1048
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 TGAACAGAAGCAGGACATTGGATCAGTTACAGAGCTATGGAGCTTTGTCCCTCGTGTAGT 837
Query 1049 GAAGGAGCTTGGAAAGATGGAATCGTCTTCTAAAAAGGAAAATTCAACAGCATCAAAGGA 1108
|||||||||||||||||| ||||||||||||||||| || ||||||||||| ||||||||
Sbjct 838 GAAGGAGCTTGGAAAGATCGAATCGTCTTCTAAAAAAGAGAATTCAACAGCTTCAAAGGA 897
Query 1109 AGAAGTTTGCAAACAAGCAAAGTCGTGGAAAAAGATCTACGAAGCTGAGCTAGCAAA-AC 1167
|||| ||||||||||||| ||||| |||||||||||||| || | |||||||||||| ||
Sbjct 898 AGAACTTTGCAAACAAGCCAAGTCTTGGAAAAAGATCTATGAGGTTGAGCTAGCAAACAC 957
Query 1168 C-G-G--GC-GAAG-AT-GA-ATC-----G-A------CCTCTCGGGTTGCTTGTGGCTA 1207
| | || ||| || || | | | | ||||||||||||| ||||||||
Sbjct 958 GAGTGAAGCTGAATCATCGAGAACAAAAAGCAGAGAGACCTCTCGGGTTGCCTGTGGCTA 1017
Query 1208 TGACAGTGAT-ATGACCGTTGAGATGACTGAAGAAGAGATCGAACTTGCTTATAGGAACG 1266
|||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1018 TGACAGTGATGA-GACCGTTGAGATGACTGAAGAAGAGATCGAACTTGCTTATAGGAATG 1076
Query 1267 TTTCTTTAGAGTGTCTTTAGATCAAACTTGTTTCATTTTG 1306
|||||||||||||||||||||| |||||||||||||||||
Sbjct 1077 TTTCTTTAGAGTGTCTTTAGATGAAACTTGTTTCATTTTG 1116
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56525923580
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5