BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G80440.1
Length=1465
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477208 jgi|Araly1|477208|fgenesh2_kg.2__2338__AT1G80440.1 1511 0.0
> Ahg477208 jgi|Araly1|477208|fgenesh2_kg.2__2338__AT1G80440.1
Length=1119
Score = 1511 bits (818), Expect = 0.0
Identities = 1002/1088 (92%), Gaps = 23/1088 (2%)
Strand=Plus/Plus
Query 157 ATGGAACTTATCCCCAATCTTCCCGACGACGTTGCTCGCGAGTGTCTCCTTCGCTCCTCC 216
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 42 ATGGAACTTATCCCCAATCTTCCCGACGACGTTGCTCGCGAGTGTCTCCTTCGCGCCTCC 101
Query 217 TACCAACAGTTCCCTGTCATCGCCTCCGTTTGCAGAGCCTGGAACCGTGAAGtctctctc 276
||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 102 TACAAACAGTTCCCTGTCATCGCCTCCGTTTGCAGAGGCTGGAACCGTGAAGTCTCTCTC 161
Query 277 tctcAGTTTTTACATCAGCGAAAAGCTTCACGCCATAGCCAAGAGCTTCTTATTCTGTCT 336
||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 162 TCTGACTTTTTACATCAGCGAAAAGCTTCACGCCATAGCCAAGAGCTTCTTATTCTCTCA 221
Query 337 CAGGCTCGTGTC---GACCCCGCTGGATCCGGAAAGATCATCGCTACGCCTGAATACCGG 393
|||||||||||| ||| |||||||||||||||| || ||||||||||||||||||||
Sbjct 222 CAGGCTCGTGTCGAAGACTCCGCTGGATCCGGAAATATTTTCGCTACGCCTGAATACCGG 281
Query 394 ATCTCTGTTCTCGAATCCGGGTCGGGTCTTTGGACGGAGCTTCCTCCGATTCCTGGTCAA 453
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 282 GTCTCTGTTCTCGAATCCGGGTCGGGTCTTTGGACGGAGCTTCCTCCGATTCCTGGTCAA 341
Query 454 ACCAAAGGACTTCCTCTGTTCTGCAGATTGGTTTCCGTTGGATCCGATCTTATTGTCTTG 513
||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 342 ACCAAAGGACTCCCTCTGTTCTGCAGATTGGTTTCTGTCGGATCCGATCTTATTGTCTTG 401
Query 514 GGTGGGCTTGACCCGATTACGTGGCAGGCC-CATGATTCGGTATTCGTCTTCAGTTTTCT 572
||||| ||||||||| |||||||||||||| | ||||||||| |||||||||||||| ||
Sbjct 402 GGTGGCCTTGACCCGGTTACGTGGCAGGCCTC-TGATTCGGTCTTCGTCTTCAGTTTCCT 460
Query 573 CACTTCCAAATGGCGCGTGGGGGCAACCATGCCAGGTGTACGGAGGTCCTTCTTCGGATG 632
||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||||
Sbjct 461 CACTTCCAAATGGCGCGTGGGAGCAACCATGCCAGGTGGACGGAGATCCTTCTTCGGATG 520
Query 633 CGCTTCGGATTCGGATCGGACGGTGCTGGTTGCGGGTGGACACAACGAAGAGAAATGTGC 692
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 521 CGCTTCGGATTCGGATCGGACGGTGTTGGTTGCGGGTGGACACGACGAAGAGAAATGTGC 580
Query 693 GCTTACGTCAGCTATGGTGTATGACGTGTCAGAAGACAAGTGGACGTTTTTGCCGGATAT 752
||| |||||||| || |||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 581 GCTGACGTCAGCAATAGTGTATGATGTGGCAGAAGACAAGTGGACGTTTTTGCCGGATAT 640
Query 753 GGCGCGGGAACGAGACGAGTGCAAAGCGGTATTCCATGCTGGCAGATTCCACGTCATCGG 812
|||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||
Sbjct 641 GGCGCGGGAACGAGACGAGTGCAAAGCGATATTCCACGCTGGCAGATTCCGGGTCATCGG 700
Query 813 TGGATATGCCACTGAGGAACAGGGGCAGTTTAGTAAAACAGCCGAATCGTTCGATGTGTC 872
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 701 TGGATATGCCACTGAGGAACAGGGGCAGTTTAGTAAAACCGCTGAATCGTTCGATGTGTC 760
Query 873 TACGTGGGAGTGGGGTCCACTTACGGAGGACTTCCTCGACGACACCGGCGATACCGTTAG 932
||||||| | ||||||||||||||||| ||||||||||||||||||| | || | |
Sbjct 761 TACGTGGCAATGGGGTCCACTTACGGATGACTTCCTCGACGACACCG-C--TAGC-T--- 813
Query 933 CCCTCCGACCTGCGTCGCCGGTG-----GG-GATTTGTACGCGTGCTGGGGTGGCGATGT 986
| ||||| |||| |||||||| || ||||||||| |||||||| ||||||||||
Sbjct 814 C--TCCGATATGCGCCGCCGGTGAAAACGGCGATTTGTACTCGTGCTGGCGTGGCGATGT 871
Query 987 GATGATGTTTCTAAATGACAAGTGGCAAAAGGTGGGCCAGATCCCTGCTGATGTGTACAA 1046
|||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 872 GATGATGTTTTTAAATGACACGTGGCAGAAGGTGGGCCAGATCCCTGCTGATGTGTACAA 931
Query 1047 TGTTACTTACGTAGCGGT-G--AGGCCCGGGATGCTGATTGTGATCGGCAACGGGAAGGC 1103
|| |||||||| | || | ||||| |||| |||||| |||||||||||||| |||||
Sbjct 932 CGTGACTTACGTGGTGGCAGCGAGGCCGGGGAAGCTGATAGTGATCGGCAACGGCAAGGC 991
Query 1104 GTTGGCTGGATACGGTGAAGCCACCGTAGGGTATATATGTGATTTAAGTAGCTCACGATG 1163
|||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 992 ATTGGCTGGATACGGTGAAGCCACCGTAGGGTATACATGTGATTTAAGTAGCGCACGATG 1051
Query 1164 GGTAAAATTGGAAACACACGGTGGTCATGTTCAAGCTGGCTGCTTCTTGGAGGTCTAATG 1223
|||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||
Sbjct 1052 GGTAAAATTGGAAACACATGTTGGTCATGTTCAAGCTGGTTGCTTCTTGGAGGTCTAATG 1111
Query 1224 GAAAACCT 1231
|||||||
Sbjct 1112 TAAAACCT 1119
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54811862555
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5