BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G80450.1
Length=854
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477207 jgi|Araly1|477207|fgenesh2_kg.2__2337__AT1G80450.1 1123 0.0
> Ahg477207 jgi|Araly1|477207|fgenesh2_kg.2__2337__AT1G80450.1
Length=836
Score = 1123 bits (608), Expect = 0.0
Identities = 781/856 (91%), Gaps = 46/856 (5%)
Strand=Plus/Plus
Query 5 TGTGCAGTAGGCAGACGAATGTCTTTTAGACAAAAACAAAAACAAGcttctcttctctct 64
|||||||||||||||||||||||||||||||||||||||||| || | | || |||||
Sbjct 1 TGTGCAGTAGGCAGACGAATGTCTTTTAGACAAAAACAAAAA-AA-C-AAT-TT-TCTCT 55
Query 65 tctcttcttctcttTAGTCATC-TC--AACCACCATGAG------TCACCAGCAGCCGCC 115
||||||| |||||||||||||| || |||||||||||| ||||||||||||||
Sbjct 56 TCTCTTCATCTCTTTAGTCATCATCTTAACCACCATGAGCCACCAGCACCAGCAGCCGCC 115
Query 116 GAGCTATGCCACCGAGCCAAACACCATGTTCGTTCAAGCAGACCCCTCTAATTTCCGTAA 175
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 116 GAGCTATGCCACCGACCCAAACACCATGTTCGTTCAAGCAGACCCTTCTAATTTCCGTAA 175
Query 176 CATCGTCCAAAAGCTCACTGGAGCACCACCCGATA--T-CTCCTCCTCATCCTTCTCCGC 232
|||||||||||||||||| |||||||||||||||| | ||||||||| ||||||||| |
Sbjct 176 CATCGTCCAAAAGCTCACCGGAGCACCACCCGATATCTCCTCCTCCTCCTCCTTCTCCAC 235
Query 233 CGTCTCAGCCGCACACCAGAAGCTTCCATTAACTCCCAAAAAGCCAGCGTTCAAACTCCA 292
|||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 236 CGTCTCCGCCGCACACCAGAAGCTTCCACTAACTCCCAAAAAGCCAGCGTTCAAGCTCCA 295
Query 293 CGAACGGCGTCAATCATCAAAGAAAATGGAGCTTAAGGTCAACAACATCACAAACCCTAA 352
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 296 CGAACGGCGTCAATCATCAAAGAAAATGGAGCTGAAGGTCAACAACATCACAAACCCCAA 355
Query 353 CGACGCTTTCAGCCATTTCCACCGAGGATTCCTCGTCTCTCCCGTCTCTCACCTAGACCC 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 CGACGCTTTCAGCCATTTCCACCGAGGATTCCTCGTCTCTCCCGTCTCTCACCTAGACCC 415
Query 413 ATTCTGGGCGCGCGTGAGTCCACATTCAGCGCGTGAGGAACACCACGCGCAACCGGACAA 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 ATTCTGGGCGCGCGTGAGTCCACATTCAGCGCGTGAGGAACACCACGCGCAACCGGACAA 475
Query 473 GGAAGAGCAAAAAGCCATAGCGGAAAAAGGGTTCTACTTCCTTCCGAGTCCGAGAAGCGG 532
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 476 GGAAGAGCAAAAAGCCATAGCGGATAAAGGGTTCTACTTCCTTCCGAGTCCGAGAAGCGG 535
Query 533 CTCCGAGCCGGCACCGGAGCTTTTGCCCCTGTTTCCTCTTCGTTCTCCTAACGGCACTAA 592
| | ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 536 CGCTGAGCCAGCACCGGAGCTTTTGCCACTGTTTCCTCTTCGTTCTCCTAACGGCACTAC 595
Query 593 TCACCGGATTCATGAAGATAATCATCGAGACTCTTAGTCTTAATTTAGAACGTATAATTT 652
|||||||||||||||||||||| || | ||||||| | | ||||| || || | |
Sbjct 596 TCACCGGATTCATGAAGATAATTATGGCGACTCTT-GA-T-AATTT-GA--GT-TCA--- 645
Query 653 GAGTTTTAGGCTATTT-AATCGTAAGTTGGGG--ACACGTGATATTTGCTGTTGCTTTTT 709
| || ||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 646 -A-TT--AGGCTATTTTAATCGTAAGTTGGGGTGACACGTGATATTTGCTGTTGCTTTTT 701
Query 710 ACTATTTTTGTTAGGGCTA--GTTAATATCCGTTTTCCATTTAACCTAGACT--TTTTTC 765
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 702 ACTATTTTTGTTAGGGCTATAGTTAATATCCGTTTTCCATTTAACCTAGACTCCTTTTTC 761
Query 766 ----AT---CCTTCATTAAACTTTTTCTTCAAGGGTCAACTATTTCGGCGCGTGTACTCC 818
|| |||||||||||| |||| || |||||||||||||||||||||||||| |||
Sbjct 762 TTCTATTATCCTTCATTAAACGTTTT-TTGAAGGGTCAACTATTTCGGCGCGTGTAGTCC 820
Query 819 ACTTCCTTTTGGAATA 834
|||||||||| |||||
Sbjct 821 ACTTCCTTTTAGAATA 836
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31603898193
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5