BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G80460.1
Length=1959
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477206 jgi|Araly1|477206|fgenesh2_kg.2__2336__AT1G80460.1 2832 0.0
> Ahg477206 jgi|Araly1|477206|fgenesh2_kg.2__2336__AT1G80460.1
Length=1884
Score = 2832 bits (1533), Expect = 0.0
Identities = 1721/1810 (95%), Gaps = 20/1810 (1%)
Strand=Plus/Plus
Query 149 CAACAAAGCATCGTTCTTCACCTTTACCa-a-aaagataaaaaa-aaagaaaaatggcaa 205
||||||||||| |||||||||||||||| | ||| | |||||| ||||| |||||||||
Sbjct 83 CAACAAAGCATTATTCTTCACCTTTACCACACAAA-A-AAAAAAGAAAGAGAAATGGCAA 140
Query 206 aagaaaaTGGATTTATAGGATCAATCGATCAAGGAACCACCAGCACCAGATTCATCATTT 265
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 141 AAGAAAATGGTTTTATAGGATCAATCGATCAAGGAACCACCAGCACCAGATTCATCATCT 200
Query 266 ACGACCACGATGCTCGTCCTGTTGCTTCTCATCAAGTCGAGTTCACTCAGTTCTATCCCG 325
||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||
Sbjct 201 ACGACCACGATGCTCGTGCTGTTGCATCTCATCAAGTCGAATTCACTCAGTTCTATCCCG 260
Query 326 AAGCTGGATGGGTGGAACACGATCCAATGGAGATACTGGAAAGTGTGAAAGTGTGCATTG 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 261 AAGCTGGATGGGTGGAACACGATCCAATGGAGATACTGGAAAGTGTGAAAGTGTGCATTG 320
Query 386 CAAAGGCTCTCGACAAAGCCACTGCCGATGGACACAACGTCGACGGTGGCTTGAAGGCCA 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 321 CAAAGGCTCTCGACAAAGCCACTGCCGATGGACACAACGTCGACGGTGGCTTGAAGGCCA 380
Query 446 TTGGGCTTACAGATCAGAGAGAGACTACTGTTGTTTGGAGCAAATCCACTGGCCTTCCTC 505
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 381 TTGGGCTCACAGATCAGAGAGAGACAACTGTTGTTTGGAGCAAATCCACTGGCCTTCCTC 440
Query 506 TCCACAAGGCTATTGTCTGGATGGATGCTCGTACCAGCTCCATCTGCAGGAGACTAGAGA 565
||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 441 TCCACAAAGCTATTGTGTGGATGGATGCTCGTACCAGTTCCATCTGCAGGAGACTAGAGA 500
Query 566 AAGAACTCTCGGGAGGAAGATCCCATTTTGTGGAGTCTTGCGGCTTGCCAATAAGCACAT 625
|||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
Sbjct 501 AAGAACTCTCGGGAGGAAGATCCCATTTTGTGGAGTCTTGTGGCTTGCCCATAAGCACCT 560
Query 626 ACTTCTCTGCCATGAAGCTGCTTTGGCTCATGGAGAATGTGGATGATGTCAAAGACGCTA 685
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 561 ACTTCTCCGCCATGAAACTGCTTTGGCTCATGGAGAATGTGGATGATGTCAAAGACGCTA 620
Query 686 TCAAGAAAGGGGATGCCATCTTTGGCACTATCGACACATGGTTGATCTGGAACATGACTG 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 621 TCAAGAAAGGGGATGCCATCTTTGGCACTATCGACACATGGTTGATCTGGAACATGACTG 680
Query 746 GCGGTATCAATGGCGGCCTTCATGTCACTGATGTCACCAATGCTTCACGGACAATGCTCA 805
||||| ||||||||||||| |||||||||||||||||||||||||| || || |||||||
Sbjct 681 GCGGTGTCAATGGCGGCCTACATGTCACTGATGTCACCAATGCTTCTCGCACCATGCTCA 740
Query 806 TGAACCTCAAAACCTTGAGCTGGGACCAGGACACTTTGAAGACACTTGGCATACCGGCTG 865
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 741 TGAACCTCAAAACCTTGAACTGGGACCAGGACACTTTGAAGACACTTGGCATACCGGCTG 800
Query 866 AAATCTTGCCCAAGATTGTCAGCAATTCAGAAGTGATTGGAGAGATCTGCAAAGGCTGGC 925
|||| ||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 801 AAATATTGCCTAAGATTGTGAGCAATTCAGAAGTGATTGGAGAAATCTGCAAAGGCTGGC 860
Query 926 CTATTCCCGGTATCAAGATTGCTGGATGTCTTGGTGATCAGCATGCTGCGATGTTGGGGC 985
||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
Sbjct 861 CTATTCCCGGTATCAAGATTGCTGGATGTCTTGGTGATCAGCATGCTGCAATGCTGGGAC 920
Query 986 AAGCTTGCAGAAAAGGCGAGGCGAAGAGTACTTATGGCACAGGTGCTTTCATTCTTCTCA 1045
|||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||
Sbjct 921 AAGCTTGCAGAAAAGGCGAGGCCAAGAGTACATATGGCACAGGCGCTTTCATTCTTCTCA 980
Query 1046 ACACCGGAGAAGTGCCAATCAAATCAGGTCATGGTCTTCTGACCACGTTGGCCTACAAGC 1105
|||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||
Sbjct 981 ACACCGGAGAAGTGCCAATCAAATCAGGTCATGGACTTCTGACAACATTGGCCTACAAGC 1040
Query 1106 TCGGTCCTCAAGCACAGACAAACTATGCATTGGAGGGTTCGATTGCCATAGCAGGAGCTG 1165
|||| ||||||||||| || ||||||||| ||||||||||||||||||||||||||||||
Sbjct 1041 TCGGGCCTCAAGCACATACCAACTATGCACTGGAGGGTTCGATTGCCATAGCAGGAGCTG 1100
Query 1166 CTGTTCAGTGGCTTAGAGACAGCCTTGGGATAATCAAAAGCGCCTCTGAGATCGAAGATT 1225
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1101 CTGTCCAGTGGCTTAGAGACAGCCTTGGGATAATCAAAAGCGCCTCTGAAATCGAAGATT 1160
Query 1226 TGGCAGCAATGGTAGATTCTACAGGAGGAGTGTACTTTGTGCCAGCGTTCAACGGCTTGT 1285
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1161 TGGCAGCAATGGTAGATTCTACAGGAGGAGTGTACTTTGTGCCAGCGTTCAACGGCTTTT 1220
Query 1286 TTGCTCCTTGGTGGAGAGAAGACGCACGTGGTGTGTGCATTGGAATCACGAGGTTCACCA 1345
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1221 TTGCTCCTTGGTGGAGAGAAGACGCACGCGGTGTGTGCATTGGAATCACGAGGTTCACCA 1280
Query 1346 ACAAGTCTCACATTGCTCGGGCTGTGCTGGAGAGCATGTGTTTCCAGGTGAAAGACGTCC 1405
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 1281 ACAAGTCTCACATTGCTCGGGCAGTGCTGGAGAGCATGTGTTTCCAAGTGAAAGACGTCC 1340
Query 1406 TTGACTCCATGAACAAAGATGCAGGTGAAAAGGGTTCCCTTA-ATAACGGGAAAGGGGAG 1464
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 1341 TTGACTCCATGAACAAAGATGCAGGTGAAAAGGGTTCCCT-AGATAACGGGAAAGGGGAG 1399
Query 1465 TTCTTGCTCAGAGTTGATGGTGGTGCCACAGCTAACAACCTTCTGATGCAGATTCAGGCT 1524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1400 TTCTTGCTCAGAGTTGATGGTGGTGCCACAGCTAACAACCTTCTGATGCAGATTCAGGCT 1459
Query 1525 GATCTGATGGGAAGTCCGGTGGTGAGGCCAGTGGACATAGAGACAACAGCATTAGGAGCA 1584
||||||||||| ||||| ||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 1460 GATCTGATGGGGAGTCCAGTGGTGAGGCCTGTGGACATAGAGACAACAGCACTAGGAGCA 1519
Query 1585 GCCTATGCAGCTGGATTAGCTGTGGGATTCTGGAAGGAAGCAGACATATTCGAGTCGGGA 1644
|||||||||||||| || ||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1520 GCCTATGCAGCTGGGTTGGCTGTGGGATTCTGGAATGAAGCAGACATATTCGAGTCAGGA 1579
Query 1645 GAGAAGGCGAAGAACTCCAAAGTTTTCAGACCCGCTATGGAAGAAGGAATCAGGAAGAAG 1704
|||||||||||||||||||||||||||||||| ||||||||||||| || ||||||||||
Sbjct 1580 GAGAAGGCGAAGAACTCCAAAGTTTTCAGACCTGCTATGGAAGAAGAAACCAGGAAGAAG 1639
Query 1705 AAAGTGGCGTCTTGGTGCAAAGCGGTGGAAAGAACATTTGATCTCGCTGACCTCTCTATC 1764
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1640 AAAGTGGCGTCTTGGTGCAAAGCGGTGGAAAGAACATTTGATCTCGCTGATCTCTCTATG 1699
Query 1765 TAAAACTTGAAGAAGT-TGATCTCAGAGATGTCCT-CTTTATTTACCACAGTTGGGCTCT 1822
||||||||||| | | | ||||| ||||| | || ||| ||||||||||||||||||||
Sbjct 1700 TAAAACTTGAATCA-TCTCATCTCTGAGAT-TACTTCTT-ATTTACCACAGTTGGGCTCT 1756
Query 1823 GTCTTCCAAGTCACATAATGTTTTAAGGTCTAATATATGTTTGATTAAACCGTCTTTGAA 1882
|||||||||||||||| |||||| || |||||||||||||| || |||||||||||||||
Sbjct 1757 GTCTTCCAAGTCACATTATGTTT-AACGTCTAATATATGTT-GAGTAAACCGTCTTTGAA 1814
Query 1883 TGATTTATACATCAATGCTTAATTCTGTTGGAAGTAAGATTGCAT---CAT-A-A-TAAG 1936
||||||||| ||||||||||||||||||||||||||||||||||| ||| | | ||||
Sbjct 1815 TGATTTATATATCAATGCTTAATTCTGTTGGAAGTAAGATTGCATTTGCATCATAATAAG 1874
Query 1937 ACATGAGAGA 1946
||||||||||
Sbjct 1875 ACATGAGAGA 1884
Score = 111 bits (60), Expect = 1e-23
Identities = 81/90 (90%), Gaps = 6/90 (7%)
Strand=Plus/Plus
Query 1 AATGCGTAGATGGATAGAGAACGGTGAAGTTTCCAACAAAATCTCTGACTCTGATTCAGC 60
|||||||||||||||| | ||||||||||||||||||||||||||||| | | ||||
Sbjct 1 AATGCGTAGATGGATAAAAAACGGTGAAGTTTCCAACAAAATCTCTGA-T-T----CAGC 54
Query 61 TTTCTATATTCAATCGTTCCCATTATCTCA 90
|||||||| |||||||||||||||||||||
Sbjct 55 TTTCTATAATCAATCGTTCCCATTATCTCA 84
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73628443585
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5