BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G80480.1
Length=1640
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477201 jgi|Araly1|477201|fgenesh2_kg.2__2331__AT1G80480.1 2021 0.0
Ahg920476 jgi|Araly1|920476|scaffold_101757.1 1051 0.0
> Ahg477201 jgi|Araly1|477201|fgenesh2_kg.2__2331__AT1G80480.1
Length=1362
Score = 2021 bits (1094), Expect = 0.0
Identities = 1280/1366 (94%), Gaps = 27/1366 (2%)
Strand=Plus/Plus
Query 104 ACTAAAATGGCGACGCTATCAACACTAGAGATTG-CTACGACCTTCCTCTCTTTCACCGC 162
|||||||||||||||||||||| ||||||||||| || ||||| | || | | |||
Sbjct 21 ACTAAAATGGCGACGCTATCAAAACTAGAGATTGCCT-CGACC-T--TC-C--T---CGC 70
Query 163 TCCTCGTTCCTCTGCCGCCTTCAACTATCGCTTTTCTTCTGCCGCCGTCTCTGTTCTCTC 222
|| ||||||| |||||||||| |||||||||| |||||||||||||||||||||| ||||
Sbjct 71 TCATCGTTCCGCTGCCGCCTTTAACTATCGCTCTTCTTCTGCCGCCGTCTCTGTTTTCTC 130
Query 223 CAGGCCCAGAGCTACCACCGTTTCCGTCAGAACGACGCCGTCTTTCTTCTATTCCCCGGT 282
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 131 CAGGCCCAGAGCTACCACCGTTTCCGTCAGAACTACGCCGTCTTTATTCTATTCCCCGGT 190
Query 283 GGTCCGCCGTCAAAGATTCTCATCTGTCTCCGCCTCAGCTACGCAGACTGAAGATTCTGA 342
||| ||||||| |||||||||||||||||| | ||||||||||||||| || ||||| ||
Sbjct 191 GGTTCGCCGTCGAAGATTCTCATCTGTCTCTGTCTCAGCTACGCAGACAGAGGATTCCGA 250
Query 343 TGTCACCACTAAGATTCCGCCAGATAACCGGATTCCGGCTACTATTATCACCGGTTTTTT 402
||| ||||||||||| ||| ||||||||||||||||||||||||||||||| || |||||
Sbjct 251 TGTTACCACTAAGATCCCGGCAGATAACCGGATTCCGGCTACTATTATCACGGGGTTTTT 310
Query 403 GGGCTCTGGCAAGACAACATTGCTGAATCATATACTGACCAGAGATCATGGGAAGCGAAT 462
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 311 GGGCTCCGGCAAGACAACATTGCTGAATCATATACTGACCAGAGATCATGGGAAGCGAAT 370
Query 463 AGCCGTGATTGAGAATGAGTTTGGTGAAGTTGACATTGATGGGTCACTTGTTGCTTCTAA 522
|||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 371 AGCCGTCATCGAGAATGAGTTTGGTGAAGTTGACATTGATGGCTCACTTGTTGCTTCTAA 430
Query 523 ATCTATTGGAGCTGAGGATATTGTGATGCTCAACAATGGCTGCCTTTGTTGCACTGTTAG 582
|||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 431 ATCTATTGGAGCAGAGGATATTGTTATGCTCAACAATGGCTGCCTCTGTTGCACTGTTAG 490
Query 583 GGGTGATCTTGTCAGGATGATTGGAGAATTAGTCAATACCAAGAAAGGAAAGTTCGATCA 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 491 GGGTGATCTTGTCAGGATGATTGGAGAATTAGTCAATACCAAGAAAGGAAAGTTCGACCA 550
Query 643 TATAGTCATAGAGACTACAGGATTGGCAAACCCGGCACCGATTATCCAAACCTTTTATGC 702
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 551 TATTGTCATTGAGACTACAGGATTGGCAAACCCGGCACCGATTATCCAAACCTTTTATGC 610
Query 703 CGAGGAAGAAATTTTCAATGATGTCAAACTGGACGGTGTTGTTACTCTAGTTGATGCTAA 762
||||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||
Sbjct 611 CGAGGAAGAAATTTTCAATCATGTCAAACTGGATGGCGTTGTTACTCTAGTTGATGCTAA 670
Query 763 GCATGCTCGTTTGCATCTAGACGAGGTCAAACCCGAAGG-TGTTGTCAATGAGGCTGTTG 821
||||||||||||||||||||| |||||||||||| | || ||||||||||||||||||||
Sbjct 671 GCATGCTCGTTTGCATCTAGATGAGGTCAAACCC-ACGGGTGTTGTCAATGAGGCTGTTG 729
Query 822 AACAAATAGCTTATGCAGATCGTATCATAGTTAACAAGACTGATCTTGTTGGTGAGGCGG 881
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 730 AACAAATAGCTTATGCAGATCGTATCATAGTCAACAAGACTGATCTTGTTGGTGAGGCGG 789
Query 882 AATTAGGTTCGGTGGTACAACGCATAAAGACAATAAACAGCATGGCTCAGATGACGCGAA 941
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 790 AATTAGGTTCGGTGGTGCAACGCATAAAGACAATAAACAGCATGGCTCAGATGACGCGGA 849
Query 942 CAAAGTACGGAAATGTTGACTTAGATTATGTTCTTGGAATTGGAGGTTTTGATCTAGAGA 1001
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 850 CAAAGTACGGAAACGTTGACTTGGATTATGTTCTTGGAATTGGAGGTTTTGATCTAGAGA 909
Query 1002 GAATCGAAAGCTCTGTGAATGAAGATGATAAGGGAgatcaccatgatcacgaccatgatc 1061
|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 910 GAATTGAAAGCTCTGTGAATGAAGACGATAAGGGAGATCACCATGATCACGACCATGA-C 968
Query 1062 atcatcatgatcacaaccatgaccacgaccatcatcaccacgatggacatgatcatcatc 1121
|| | || | || |||||||||||| ||||||||||||| |||||| ||||| |
Sbjct 969 --CA-C--GA-C-CA----TGACCACGACCACCATCACCACGATGAACATGAGCATCA-C 1016
Query 1122 a-tcattctcatgatcacacccatgatcCCGGTGTTTCTTCAGTCAGTATAGTTTGCGAA 1180
| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 1017 AATCATTCTCACGATCACACCCATGATCCTGGTGTTTCTTCAGTCAGTATAGTTTGCCAA 1076
Query 1181 GGAAGCTTAGACCTTGAGAAGGCAAACATGTGGCTCGGGACGTTACTGATGGAACGCAGT 1240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 GGAAGCTTAGACCTTGAGAAGGCAAACATGTGGCTCGGGACGTTACTGATGGAACGCAGT 1136
Query 1241 GAAGACATCTACAGAATGAAAGGTCTCCTCTCGGTCCACACCATGGAGGAGAGATTCGTG 1300
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1137 GAAGACATCTACAGAATGAAAGGTCTCCTCTCGGTTCACACCATGGAGGAGAGATTTGTG 1196
Query 1301 TTTCAAGGAGTCCATGACATATTTCAAGGATCACCAGACAGGTTATGGGGAAGAGAGGAG 1360
||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||
Sbjct 1197 TTTCAAGGAGTCCATGACATATTTCAAGGATCACCAGACCGGTTATGGGGAAGAAACGAG 1256
Query 1361 GAGAGAGTGAATAAGATCGTTTTCATTGGTAAGAATTTGAACAGGGAGGAGTTAGAGAAG 1420
||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1257 GAGAGAGTGAACAAGATCGTCTTCATTGGTAAGAATTTGAACAGGGAGGAGTTGGAGAAG 1316
Query 1421 GGTTTTAAAGCTTGCTTGATTTGATTTTTGCACTAGCTCTATGTAT 1466
||||||||||||||||||||||||| |||||||||| | |||||||
Sbjct 1317 GGTTTTAAAGCTTGCTTGATTTGATATTTGCACTAGGTGTATGTAT 1362
> Ahg920476 jgi|Araly1|920476|scaffold_101757.1
Length=1382
Score = 1051 bits (569), Expect = 0.0
Identities = 954/1137 (84%), Gaps = 38/1137 (3%)
Strand=Plus/Plus
Query 329 ACTGAAGATT-C-T-GATGTCACCACTAAG-ATTCCGCCA-GATAACCGGATTCCGGCTA 383
||||| |||| | | ||||| ||||| || ||| | || || || || |||||||| |
Sbjct 247 ACTGATGATTCCTTCGATGTTTCCACTGAGAATT-TG-CAGGACAATCGAATTCCGGCCA 304
Query 384 CTATTATCACCGGTTTTTTGGGCTCTGGCAAGACAACATTGCTGAATCATATACTGACCA 443
||||||||||||| || |||| ||||| ||||| |||||||| || |||||| ||||
Sbjct 305 CTATTATCACCGGGTTCCTGGGTTCTGGTAAGACGACATTGCTAAACCATATATTGACGG 364
Query 444 GAGATCATGGGAAGCGAATAGCCGTGATTGAGAATGAGTTTGGTGAAGTTGACATTGATG 503
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 365 GAGATCATGGGAAGCGCATAGCCGTGATTGAGAATGAGTTTGGTGAAGTCGACATTGATG 424
Query 504 GGTCACTTGTTGCTTCTAAATCTATTGGAGCTGAGGATATTGTGATGCTCAACAATGGCT 563
| || ||||| || ||||| || |||||| |||||||| ||||||| ||||||||||
Sbjct 425 GATCGCTTGTGGCAGCTAAAACTGCTGGAGCAGAGGATATAATGATGCTTAACAATGGCT 484
Query 564 GCCTTTGTTGCACTGTTAGGGGTGATCTTGTCAGGATGATTGGAGAATTAGT-CAATACC 622
| || ||||| |||||||||||||||||||| ||||||||| ||||| || || |||
Sbjct 485 GTCTGTGTTGTACTGTTAGGGGTGATCTTGTGAGGATGATTTCTGAATTGGTTCAG-ACC 543
Query 623 AAGAAAGGAAAGTTCGATCATATAGTCATAGAGACTACAGGATTGGCAAACCCGGCACCG 682
|||||||||| |||||| ||||| || || ||||| ||||||||||| ||||| || |||
Sbjct 544 AAGAAAGGAAGGTTCGACCATATCGTTATTGAGACAACAGGATTGGCGAACCCTGCCCCG 603
Query 683 ATTATCCAAACCTTTTATGCCGAGGAAGAAATTTTCAATGATGTCAAACTGGACGGTGTT 742
||||| ||||| |||||||| ||||| |||||||||||||||||||||||||| || |||
Sbjct 604 ATTATTCAAACTTTTTATGCTGAGGATGAAATTTTCAATGATGTCAAACTGGATGGAGTT 663
Query 743 GTTACTCTAGTTGATGCTAAGCATGCTCGTTTGCATCTAGACGAGGTCAAACCCGAAGG- 801
|| ||||| ||||||||||| |||||||||||||||||||| ||||||||||| |||||
Sbjct 664 GTCACTCTGGTTGATGCTAAACATGCTCGTTTGCATCTAGATGAGGTCAAACCTGAAGGC 723
Query 802 TGTTGTCAATGAGGCTGTTGAACAAATAGCTTATGCAGATCGTATCATAGTTAACAAGAC 861
| | ||||||||||| || |||||||||||||| ||||||||||||||| ||||||||||
Sbjct 724 TAT-GTCAATGAGGCAGTAGAACAAATAGCTTACGCAGATCGTATCATAATTAACAAGAC 782
Query 862 TGATCTTGTTGGTGAGGCGGAATTAGGTTCGGTGGTACAACGCATAAAGACAATAAACAG 921
|||||||||||||||| | ||| ||| ||| ||| | || || |||||||| ||||||||
Sbjct 783 TGATCTTGTTGGTGAGCCAGAACTAGCTTCAGTGATGCAGCGGATAAAGACCATAAACAG 842
Query 922 CATGGCTCAGATGACGCGAACAAAGTACGGAAATGTTGACTTAGATTATGTTCTTGGAAT 981
||||||||| |||| ||| |||||||| || || |||||||| |||||||||||||||||
Sbjct 843 CATGGCTCACATGAAGCGGACAAAGTATGGGAAGGTTGACTTGGATTATGTTCTTGGAAT 902
Query 982 TGGAGGTTTTGATCTAGAGAGAATCGAAAGCTCTGTGAATGAAGATGATAA-G-GGAgat 1039
|||||| ||||||||||| ||||| || ||||||||||||||| | ||| | | || | |
Sbjct 903 TGGAGGGTTTGATCTAGAAAGAATTGAGAGCTCTGTGAATGAAAAAGATCACGAGG-G-T 960
Query 1040 caccatgatca-cgaccatgatcatcatcatgatcacaaccatgaccacga-c-catca- 1095
|| ||||||| | ||||||| ||| | |||| ||| || || ||| || | || ||
Sbjct 961 CATGATGATCATC-ACCATGAACATGACCATGGTCATGAC--TG-CCATGATCACAACAA 1016
Query 1096 tcaccacgatggacatgatcatc-atcatcattctcatgatcacacccatgatcCC-GGT 1153
| | || ||| ||||| || | | || ||||||||||||||||| ||||| ||| |||
Sbjct 1017 TGAGCATGAT---CATGAACA-CGAGCACCATTCTCATGATCACACTCATGA-CCCTGGT 1071
Query 1154 GTTTCTTCAGTCAGTATAGTTTGCGAAGGAAGCTT-AGACCTTGAGAAGGCAAACATGTG 1212
||| |||||||||||||||||||||||||| | || |||||| |||||||| ||||||||
Sbjct 1072 GTTGCTTCAGTCAGTATAGTTTGCGAAGGA-GATTTAGACCTCGAGAAGGCTAACATGTG 1130
Query 1213 GCTCGGGACGTTACTG-ATGGAACGCAGTGAAGACATCTACAGAATGAAAGGTCTCCTCT 1271
||| ||| || || || | |||| ||||| || |||||||||||||||||| ||||||
Sbjct 1131 GCTTGGGGCGCTATTGTACC-AACGTAGTGAGGATATCTACAGAATGAAAGGTATCCTCT 1189
Query 1272 CGGTCCAC-ACCATGGAGGAGAGATTCGTGTTTCAAGGAGTCCATGACATATTTCAAGGA 1330
| ||||| || ||||| ||||||||||||||||| ||||| ||||| |||||| |||||
Sbjct 1190 CCGTCCAAGAC-ATGGACGAGAGATTCGTGTTTCAGGGAGTTCATGAAATATTTGAAGGA 1248
Query 1331 TCACCAGACAGGTTATGGGGAAGAGAGGAGGAGA-GAGTGAATAAGATCGTTTTCATTGG 1389
||||||||| |||||||| ||| ||| ||| | | || || |||||||||||||| ||
Sbjct 1249 TCACCAGACCGGTTATGGAGAAAAGATGAG-ACAAGAACCAACAAGATCGTTTTCATCGG 1307
Query 1390 TAAGAATTTGAACAGGGAGGAGTTAGAGAAGGGTTTTAAAGCTTGCTTGATTTGATT 1446
|||| ||||||| ||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1308 CAAGAGTTTGAACCGGGAGGAGTTAGAGATGGGTTTTAGAGCTTGCTTGATTTGATT 1364
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61477655430
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5