BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G80500.1

Length=898
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg909665 jgi|Araly1|909665|Al_scaffold_0002_2746                    538    3e-152
  Ahg332561 jgi|Araly1|332561|fgenesh1_pm.C_scaffold_8001904           191    8e-48 


> Ahg909665 jgi|Araly1|909665|Al_scaffold_0002_2746
Length=435

 Score =  538 bits (291),  Expect = 3e-152
 Identities = 315/327 (96%), Gaps = 0/327 (0%)
 Strand=Plus/Plus

Query  335  AGAGAAGATGCTGCACAGTTGCACCAATTTATATTACATGCAGCGTTAGATGTTGTCCAA  394
            |||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||
Sbjct  109  AGAGAAGATGCTGCCCAGTTGCACCAATTTATATTACATGCCGCATTAGATGTTGTCCAA  168

Query  395  GACCTAGCATGGACTACAAGTGCCATGTTCTTGAAGTCAGTGGACAGGTTTAACGATCTG  454
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  169  GACCTAGCATGGACTACAAGTGCCATGTTCTTGAAGTCAGTAGACAGGTTTAACGATCTG  228

Query  455  GTTGTGTCAGTATATGTTACCGCAGGCCATACCCGACTGATGCTCCTTCATGATTCACGG  514
            ||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct  229  GTTGTGTCAGTGTATGTTACCGCAGGCCATACTCGACTCATGCTCCTTCATGATTCACGG  288

Query  515  AATGAGGACGGCATCAAGAGCTTCTTTCAAGAGGTGCATGAGCTTTATATAAAGATTCTT  574
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  289  AATGAGGACGGCATCAAGAGCTTCTTTCAAGAGGTGCATGAGCTCTATATAAAGATTCTT  348

Query  575  CTGAATCCCTTGTATCTTCCTGGTTCTCGGATAACGTCGTCACATTTTGACACCAAAGTA  634
            |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct  349  CTGAATCCCTTGTATCTTCCTGGTTCTCGGATTACGTCGTCACATTTTGACACTAAAGTA  408

Query  635  CGTGCACTTGCAAGAAAGTACCTGTAG  661
            |||||||| ||||||||||| ||||||
Sbjct  409  CGTGCACTGGCAAGAAAGTATCTGTAG  435


 Score =  128 bits (69),  Expect = 7e-29
 Identities = 77/81 (95%), Gaps = 0/81 (0%)
 Strand=Plus/Plus

Query  254  ATGGCTAACACTGCCTGCTTTATCATTGTGGGCCGGAATGATATTCCCATCTATGAAGCT  313
            ||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct  1    ATGGCTAACACCGCCTGCTTTATAATTGTGGGTCGGAATGATATTCCCATCTATGAAGCT  60

Query  314  GAAGTTGGATCTGCTGCTAAA  334
            ||||||||||||||||| |||
Sbjct  61   GAAGTTGGATCTGCTGCCAAA  81


> Ahg332561 jgi|Araly1|332561|fgenesh1_pm.C_scaffold_8001904
Length=1680

 Score =  191 bits (103),  Expect = 8e-48
 Identities = 128/139 (92%), Gaps = 6/139 (4%)
 Strand=Plus/Minus

Query  62   CTGTTTGAAGTATTTAGCACGGATCCAAACACG-AGAGACATCCCAAGGAATCTGATTCT  120
            |||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||
Sbjct  804  CTGTTTGAAGTATTTAGCACGGATCCAAAC-CGGAGAAACATCCCAAGGAATCTGATTCT  746

Query  121  CCAAT-GTTTGTCTAGACATAAGATGCGTTGATGGTAAAGAAGAAACGATACGCACATCA  179
            | ||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct  745  C-AATTGTTTGTCTAGACATAAGATGCGTTGACGGTAGAGAAGAAACGATACGCACATCA  687

Query  180  GATTCACAGGGTTTTACTT  198
            ||| | ||| ||||| |||
Sbjct  686  GAT-CTCAGCGTTTT-CTT  670



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 33281306541


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5