BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G80510.1
Length=1945
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477198 jgi|Araly1|477198|fgenesh2_kg.2__2328__AT1G80510.1 2883 0.0
> Ahg477198 jgi|Araly1|477198|fgenesh2_kg.2__2328__AT1G80510.1
Length=1886
Score = 2883 bits (1561), Expect = 0.0
Identities = 1793/1903 (94%), Gaps = 23/1903 (1%)
Strand=Plus/Plus
Query 37 TCTCTGTGTATCGCTCGCCGACGAGGCAGGAAGGACGACCAATTGAGACGTTGACCCTTA 96
||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1 TCTCTCTCTATCGCTCGCCGACGAGGCAGGAAGGACGACCGATTGAGACGTTGACCCTTA 60
Query 97 ATCCGATTTGAACAAtctctctctct-ctctctctctctctctctTGGTCGAGATTCATA 155
| |||||||| || | | | | | | ||| |||||||| | || | |||||
Sbjct 61 AGCCGATTTG----AT-T-T-T-T-TGAACAATCT-TCTCTCTC-T-CTC---ACTCATA 105
Query 156 AAAGtctcttctttcgtcttcttcgatctcggataatcacaaagtttatct-tcttcttt 214
||||||||||||||||||| |||||||||||||| ||| |||||||| | | ||| ||
Sbjct 106 AAAGTCTCTTCTTTCGTCTGCTTCGATCTCGGATTATCTGTAAGTTTATTTATATTC-TT 164
Query 215 cttttttAAAAATAAAATCAGAGAGCAGATCTTGCGAATGGATAGCAGTTACTCTGTCAT 274
|||| ||||| |||| | | | ||||||| |||||||||||||||||||||||| ||
Sbjct 165 CTTTAAAAAAAAAAAAAAAAAAAAACAGATCTGGCGAATGGATAGCAGTTACTCTGTAAT 224
Query 275 TTCCAAAACTTCTTACGTTGAGTTACAGAAACCGACGGTTAATGGGAAA-CCCAGAAACA 333
|||||||||||||||||||||| |||||||||||||| |||| ||||| ||||||||||
Sbjct 225 TTCCAAAACTTCTTACGTTGAGCTACAGAAACCGACGAATAAT-GGAAACCCCAGAAACA 283
Query 334 AGTTGCTTCCTTCTGATGAAGAAAGCTTCGTCAATGATTTTGACGATGCCCGTAATGGTG 393
||||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||
Sbjct 284 AGTTGCTTCCTTCTGATGAAGAAAGCTTCGTTAACGATTTTGACGATACCCGTAATGGTG 343
Query 394 TTGGGGGTGAAGATGCTGATGATCTCGATTTCGATGTCGCTGATTACCCACTCGTTCATG 453
|||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 344 TTGGCGGTGAAGATGGTGATGATCTCGATTTCGATGTCGCTGATTACTCACTCGTTCATG 403
Query 454 GCAAATCATCCAATCAAGGATCTGGGATTTACGGTGCTGTTTTCAATCTCACCACTTCTA 513
|||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||| |
Sbjct 404 GCAAATCATCCAATCAAGGATCTGGGATCTACGGTGCCGTTTTTAATCTCACCACTTCCA 463
Query 514 TTATCGGCGCCGGGATCATGGCATTGCCCGCCACCATGAAAGTTCTCGGCTTGGTTCTAG 573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 464 TTATCGGCGCCGGGATCATGGCATTGCCCGCCACCATGAAAGTTCTCGGCTTGGTTCTAG 523
Query 574 GGTTTGTTTTGATTATCCTCATGGCTCTTTTGTCTGAGATTAGTGTTGAGCTTCTGGTTA 633
||||| |||||||||||||||||||| |||||||||||||||||||||||||| || |||
Sbjct 524 GGTTTCTTTTGATTATCCTCATGGCTATTTTGTCTGAGATTAGTGTTGAGCTTTTGATTA 583
Query 634 GATTTTCTGTTCTTTACAAGTCCAAATCCTACGGCGAGGTTGTTCAATTCGCTTTGGGGA 693
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 584 GATTTTCAGTTCTTTACAAGTCCAAATCTTACGGCGAGGTTGTTCAATTCGCTTTGGGGA 643
Query 694 AAACCGCTAGGGTTTTGTCTGAGATTTGTATCATTGTCAACAATGGTGGCGTTCTCGTTG 753
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 644 AAACCGCTAGGGTTTTGTCTGAGATTTGTATCATTGTCAACAATGGTGGCGTTCTCGTTG 703
Query 754 TTTACTTGATTATTATGGGCGATGTTATGTCTGGTTCTCTCCATCACATTGGGGTTTTGG 813
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 704 TTTACTTGATTATTATGGGCGATGTTATGTCTGGTTCTCTTCATCACATTGGGGTTTTGG 763
Query 814 ATCAATGGTTAGGGAATGGGTTCTGGGATCACCGTAAAGTGTTGATTTTGATTGTTATGG 873
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 764 ATCAATGGTTAGGGAATGGATTCTGGGATCACCGTAAAGTTTTGATTTTGATTGTTATGG 823
Query 874 TCATCTTCTTGGCTCCTCTCTGTGCTTTGAACAAGATTGATTCCTTGAGCGTTACATCAG 933
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 824 TCATCTTCTTGGCTCCTCTCTGTGCTTTGAACAAGATTGATTCCTTGAGCGTTACATCTG 883
Query 934 CTGCTTCTGTTGCTCTTGCTGTTGTCTTTGTGGTTGTCTGTTTTGTTGTCGCCACCATCA 993
||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||
Sbjct 884 CTGCTTCTGTTGCTCTTGCTGTTGTCTTTGTGGTTGTCTGTTTCGCTGTCGCCACGATCA 943
Query 994 AGCTTATCGAAGGAACTATCGACCCTCCAAGGTTGTCTCCTGACTTTGGTTCCAAACAAG 1053
|||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||
Sbjct 944 AGCTTATCGAAGGAACTATCGACCCTCCAAGGATGAGTCCTGATTTTGGTTCCAAACAAG 1003
Query 1054 CAATTTTGGACCTTCTTGTGGTCATTCCGATTATGTCAAACGCATACGTTTGTCACTTCA 1113
| || ||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1004 CGATCTTGGATCTTCTTGTGGTCATTCCAATTATGTCAAACGCATATGTTTGTCACTTCA 1063
Query 1114 ATGTTCAGCCGATATACAACGAGCTTGAAGGTCGATCACCTCATAAGATGAACCGAGTTG 1173
||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||
Sbjct 1064 ATGTTCAGCCGATATACAATGAGCTCGAAGGTCGATCACCGCATAAGATGAACCGAGTTG 1123
Query 1174 GGAGAATCACAACAGCCATTTGTGTTGTTGTCTACGCTTCAACTGCTGTATCGGGTTATC 1233
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1124 GGAGAATCACAACAGCCATTTGTGTTGTTGTCTACGCTTCAACTGCTATATCGGGTTATC 1183
Query 1234 TCCTCTTCGGCAAGGACACCGAATCAGATATCTTGACCAACTTTGATCAAGATCTCGGTA 1293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1184 TCCTCTTCGGCAAGGACACCGAATCAGATATCTTGACCAACTTTGATCAAGATCTCGGTA 1243
Query 1294 TCCGGTTCAGCTCTGCGGTGAATTACATTGTCAGAATCGGCTACATTCTTCATCTAGTTC 1353
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1244 TCCGGTTCAGCTCTGCGGTGAATTACATTGTCAGAATCGGTTACATTCTTCATCTAGTTC 1303
Query 1354 TCGTCTTCCCTGTGATCCATTTCTCCTTGAGAGAAACCGTCAATACCTTACTGTTTGAAG 1413
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1304 TCGTCTTCCCCGTGATCCATTTCTCCTTGAGAGAAACCGTCAATACCTTACTGTTTGAAG 1363
Query 1414 GCTCGCCTCCTCTATCCGAAAGCAAAAAGAGATCTTTGGGACTCACTGTGGTCTTGCTGG 1473
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1364 GCTCGCCTCCTCTATCCGAAAGCAAAAAGAGATCTTTGGGACTCACAGTGGTCTTGCTGG 1423
Query 1474 CTCTTATTTACATTGGCTCAACGATGATACCAAACATATGGACTGCTTTCAAATTCACAG 1533
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 1424 CTCTTATTTACATTGGCTCGACGATGATCCCAAACATATGGACTGCTTTCAAATTCACAG 1483
Query 1534 GCGCAACATCAGCTGTTTCACTTGGTTTTACATTCCCTGCTCTGATCGCATTGCGGTTAG 1593
||||||||||||| ||||| ||||||||||| ||||||||||| |||||||| |||||||
Sbjct 1484 GCGCAACATCAGCGGTTTCGCTTGGTTTTACGTTCCCTGCTCTTATCGCATTACGGTTAG 1543
Query 1594 GGAAACAGAGCAATTCGTTAAGCTTCGTGGAAAGATCAGTGTCATGGCTGATGCTAATCT 1653
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1544 GGAAACAGAGCAATTCGCTAAGCTTCGTGGAAAGATCAGTGTCATGGCTGATGCTAATCT 1603
Query 1654 TGGCCGTAGTGGTTAGCATTGTTGGAACCATTGGCAACATTTACAGCCTCGAGAGCAAAT 1713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1604 TGGCCGTAGTGGTTAGCATTGTTGGAACCATTGGCAACATTTACAGCCTCGAGAGCAAAT 1663
Query 1714 CAGATTGATACTT-ATAGCAGT-TTTC-CAGGATCTTGTAGATTTATATAGTCAGAGATT 1770
||||||||||||| |||||||| ||| |||||||||||||||||||| | |||||||||
Sbjct 1664 CAGATTGATACTTTATAGCAGTGTTTTTCAGGATCTTGTAGATTTATACAATCAGAGATT 1723
Query 1771 CTCAGTCCAATACCGAACCGGAAATCTTCAGCGACTGCTACATGCACCTTTAGGATGTCG 1830
||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 1724 CTCAGTCCAATACCGAACCGGAAATCTTCAGCGACTGTTACATGCACCTTAAGGATGTCG 1783
Query 1831 ATCAATGGCGTTTGTTCAGGCTAAGCCTAAAGATTTCCGGTTTGTGAATTATATGTATAC 1890
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 1784 ATCAATGGCGTTTGTTCAGGTTAAGCCTAAAGATTTCTGGTTTGTGAATTATATGTATAC 1843
Query 1891 AGACACCTGATTCTTATGATTTTATTATATATACGCAtttttt 1933
|||||||||||||||||||| |||| |||||||||||||||||
Sbjct 1844 AGACACCTGATTCTTATGATATTATAATATATACGCATTTTTT 1886
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73095180155
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5