BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G80520.1
Length=579
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927453 jgi|Araly1|927453|scaffold_203014.1 627 3e-179
Ahg471774 jgi|Araly1|471774|fgenesh2_kg.1__1728__AT1G15760.1 303 7e-82
> Ahg927453 jgi|Araly1|927453|scaffold_203014.1
Length=584
Score = 627 bits (339), Expect = 3e-179
Identities = 424/463 (92%), Gaps = 14/463 (3%)
Strand=Plus/Plus
Query 1 ATGGATTGGTTCTCATGGCTCTCGAGAACAAATCTCGAAGCTTCTCTCATCTACGAGTAC 60
|||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||
Sbjct 22 ATGGATTGGTTCTCATGGCTCTCGAGGACGAATCTCGAAGCTTCTCTAATCTACGAGTAC 81
Query 61 GGTCTCTCTTTCTCAAACAACGAGCTCGAGTACGAAGACATTGCTTACTTCAACCACGAA 120
|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 82 GGTCTCTCTTTCTCGAACAACGAGCTCGAGTTCGAAGACATTGCTTACTTCAACCACGAA 141
Query 121 TTTCTCCAGAGCATGGGTATCTCAATCGCTAAGCACCGCCTCGAGATCCTGAAGCTTGCT 180
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 142 TTTCTCCAGAGCATGGGGATCTCGATCGCTAAGCACCGCCTCGAGATCCTGAAGCTTGCT 201
Query 181 CGGCGTGATCGGAAACCTTCACCGCTCACCGCTCGTTCGATTTTCAGAGTCTTGATCGCC 240
|||||||| |||||||| || ||||||||||||||||| ||||||||||||||||| ||
Sbjct 202 CGGCGTGACCGGAAACCGTCTCCGCTCACCGCTCGTTCAATTTTCAGAGTCTTGATTGCG 261
Query 241 ATCAAGAAGACCGGGAAATGCTTCTCCGAGCATGTTAGGGCCTGGATCCGACGAGAGGAA 300
|||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||
Sbjct 262 ATCAAGAAGACCGGGAAATGCTTCTCCGAGTATGTTCGATCCTGGATCCGACGAGAGGAA 321
Query 301 TCGTCCCGGGCTCTGGT-CGTTGTGTCGAGAAGCACGAGTAGCAGCGGGAACGGGAGATG 359
||||| ||||||||||| | |||||||||| | | | ||||||||||||||||||
Sbjct 322 TCGTCTCGGGCTCTGGTGC-TTGTGTCGAG--G-A-G-----CAGCGGGAACGGGAGATG 371
Query 360 GAAAAGTGCGAGGAAGAAGAGATTGGTGATGCCGA-GT--AACGGAAATGGCGTCAAGGA 416
|||| | |||||||||||||||| ||||||||||| | ||||||||||||| |||||
Sbjct 372 GAAAGGCGCGAGGAAGAAGAGATCGGTGATGCCGATGAGCAACGGAAATGGCGGAAAGGA 431
Query 417 AGAGAGACTCCTGTTGACGAATGGAACTCCTTGTAGGCTCGAT 459
||||||||| |||||||||||||||||||||||||||||||||
Sbjct 432 AGAGAGACTTCTGTTGACGAATGGAACTCCTTGTAGGCTCGAT 474
> Ahg471774 jgi|Araly1|471774|fgenesh2_kg.1__1728__AT1G15760.1
Length=597
Score = 303 bits (164), Expect = 7e-82
Identities = 400/508 (79%), Gaps = 39/508 (8%)
Strand=Plus/Plus
Query 7 TGGTTCTCATGGCTCTCGAGAACAAATCTCGAAGCTTCTCTCATCTACGAGTACGGTCTC 66
||||| |||||||||||||||||||| || ||| ||||||||||| |||| ||||||||
Sbjct 13 TGGTTTTCATGGCTCTCGAGAACAAACCTTGAACCTTCTCTCATCCACGAATACGGTCTT 72
Query 67 TCTTTCTCAAACAACGAGCTCGAGTACGAAGACATTGCTTACTTCAACCACGAATTTCTC 126
|| ||||| | ||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 73 TCCTTCTCTCAGAACGAGCTCGAACACGAAGACATTTCTTACTTCAACCACGAATTTCTC 132
Query 127 CAGAGCATGGGTATCTCAATCGCTAAGCACCGCCTCGAGATCCTGAAGCTTGCTCGGCGT 186
||||||||||| ||||| ||||| || ||||| |||||||| || || || ||||| ||
Sbjct 133 CAGAGCATGGGAATCTCCATCGCCAAACACCGTCTCGAGATTCTCAAACTCGCTCGTCGA 192
Query 187 GATCGGAA-ACCT-TCA-CCGCTCACCGCTCGTTCGATTTTCAGAGTCTTGATCGCCATC 243
||||| || | || ||| || |||||| |||| || || | |||| || || | || ||
Sbjct 193 GATCGCAAGAACTCTCATCCTCTCACCTCTCGATCCATCTCCAGAATCGTGGTTGCGATT 252
Query 244 AAGAAGACCGGGAAATGCTTCTCCGAGCATGTTAGG-GCCTGGATCCGACGAGA-G--GA 299
||||| ||||| ||||| |||||||| || || | | ||||||||||| || || | ||
Sbjct 253 AAGAATACCGGTAAATGTTTCTCCGATCACGT-ACGCGCCTGGATCCGCCGTGAAGAAGA 311
Query 300 --A-TCGTC--C-CGGGCTCTGGTCGTT-GTGTCGA-GAAGCACGAGTAGCAGCGGGAAC 351
| ||||| | || |||||||| ||| ||| ||| |||| || || ||||||||||
Sbjct 312 GGAGTCGTCGTCTCGAGCTCTGGT-GTTAGTGCCGAAGAAG-ACTAGCAGCAGCGGGATT 369
Query 352 GGGA-GATGGAAAAGTG-----C-GA-G-G-AAGAAGAGAT-TGGTGATGCCGAGTAACG 400
|||| | |||| | ||| | || | | || ||||||| || |||||||||| || |
Sbjct 370 GGGAAG-TGGAGAGGTGGATTTCTGAAGAGGAACAAGAGATCTG-TGATGCCGAGCAATG 427
Query 401 GAAATGGCG--T-CAAG--G-AAGAGAGACTCCTGTTGACGAATGGAACTCCTTGTAGGC 454
||||||||| | | || | ||||||| | ||||||| ||||| |||||||||||
Sbjct 428 GAAATGGCGGATTCGAGAAGCAAGAGAGGTTGTTGTTGACCAATGGGACTCCTTGTAGAA 487
Query 455 TCGATAGCTTCTCCAA-TCCAAAGGTTT 481
||||||||||||| || ||| | |||||
Sbjct 488 TCGATAGCTTCTC-AAGTCCCATGGTTT 514
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21176351895
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5