BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G80530.1
Length=2035
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927452 jgi|Araly1|927452|scaffold_203013.1 2723 0.0
> Ahg927452 jgi|Araly1|927452|scaffold_203013.1
Length=1732
Score = 2723 bits (1474), Expect = 0.0
Identities = 1631/1708 (95%), Gaps = 6/1708 (0%)
Strand=Plus/Plus
Query 75 GAGATGACGAAGCTGGCGGAAAAATCGGGAAGCAGACCACCGTGGGTGGGATTAGCGGCA 134
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 18 GAGATGACGAAACTGGGGGAAAAATCGGGAAGCAGACCACCGTGGGTGGGATTAGCGGCA 77
Query 135 GCCGCATGGGTTCAGGTCTCGGCGGGAAGTGGTTCGACGTTCCCGCTTTACTCCTCCGCT 194
||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||
Sbjct 78 GCCGCATGGGTTCAGGTGTCGGCGGGAAGTGGTTCGACTTTCCCGCTGTACTCCTCCGCT 137
Query 195 CTCAAATCGGTTTTGGGTTTTAGCCAGCAGCAGGTCACGATCCTTGGCGTTGCTTGTGAT 254
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 138 CTCAAATCGGTTTTGGGTTTTAGCCAGCAACAGGTCACGATCCTTGGCGTCGCTTGTGAT 197
Query 255 TTGGGTGAAAACATGGGTCTTCTTCCTGGATACGCCAGTAACAAGCTTCCTCCATGGTCG 314
||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 198 TTGGGGGAAAACATGGGTCTACTTCCGGGATACGCCAGTAACAAGCTTCCTCCATGGTCG 257
Query 315 ATGCTTCTCATCGGAGCTTCCTCTTGTTTCCTCGGCTTCGGCGTTCTTTGGCTCTCCGTC 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 258 ATGCTTCTCATCGGAGCTTCCTCTTGTTTCCTCGGCTTCGGCGTTCTTTGGCTCTCCGTC 317
Query 375 AGCCAAATCGTTCTTGGCTTGCCTTTTTGGCTGCTTTTTGTAGCTCTAGCTTTAGCTACC 434
||||||||||||| ||| || ||||| |||||||||||| ||||||||||||||||||||
Sbjct 318 AGCCAAATCGTTCATGGTTTACCTTTCTGGCTGCTTTTTATAGCTCTAGCTTTAGCTACC 377
Query 435 AATAGCAACTCGTGGTTCGGTACAGCATCTCTTGTCACCAATATGAGGAATTTTCCTATG 494
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 378 AATAGCAACTCATGGTTCGGTACAGCATCTCTTGTCACCAATATGAGGAATTTTCCTATG 437
Query 495 AGCCGAGGCCCTGTGGCTGGACTTCTCAAAGGTTATATTGGGATCAGTGGTGCAGCATTC 554
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 438 AGCCGAGGCCCTGTGGCTGGACTTCTCAAAGGTTATATCGGGATCAGTGGTGCAGCATTC 497
Query 555 ACTGTCTTGTTCAGCATGGTGCTTCACCATTCAGCTATGGATCTGCTTCTGTTTCTTACG 614
|||||||||||||||||||||||||| |||||||||| | |||||||||||||||||||
Sbjct 498 ACTGTCTTGTTCAGCATGGTGCTTCATCATTCAGCTACGAATCTGCTTCTGTTTCTTACT 557
Query 615 GTTGGTATTCCGGTTATATGCTTAACTGTGATGTATTTCATCCGCCCCTGTATTCCGGCT 674
|||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 558 GTTGGTATTCCGGTGATATGCTTAACTGTCATGTATTTCATCCGCCCCTGTATCCCGGCT 617
Query 675 ACTGGTGAAGACCCTTCTGAGCCCATGTATTTCGCTTTTCTGCTTGTCACTAGTATACTG 734
|||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||
Sbjct 618 ACTGGTGAAGACCCTTCTGAGCCCATGTATTTCGCTTTCCTGCTTGCCACAAGTATACTT 677
Query 735 TTTGCTGCTTATCTTGTTGTGACGACTGTTTTGAGTGAGGTGTTTATACTGCCCAGCATA 794
|||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||
Sbjct 678 TTTGCTGCTTATCTTGTTGTGACGACTGTTGTGAGTGAGGTGTTTATTCTGCCAAGCATA 737
Query 795 CTCAAATATGTTCTTGTGGCTATCATGGTGTTACTTTTGTTGTCGCCTCTTGCGGTTCCC 854
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 738 CTCAAATATGTTCTTGTGGCTATCATGGTGTTACTTTTGCTGTCGCCTCTTGCGGTTCCC 797
Query 855 ATCAAGATGACACTTTTCCGTTCAAATGCCAAGAGCTCTCCACTGGGGTCTTCAGACAAT 914
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 798 ATCAAGATGACACTTTTCCGTTCAAATGCCAAGAGCTCTCCACTGGGTTCTTCAGACAAT 857
Query 915 CTAGCCAAAGAGGAAGGTACTCATGAAGAACCGTTGCTGACACCTTCTACCTCAGCTTCA 974
|||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||
Sbjct 858 CTAGCCAAAGAGGAAGGTACCCATGAAGCACCGTTGCTTACACCTTCTACCTCAGCTTCA 917
Query 975 AACCTTGGGCCTATCTTTGAGGGAGATGATGAGTCGGATATGGAAATACTTCTTGCTGAA 1034
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 918 AACCTTGGGCCTATCTTCGAGGGAGATGATGAGTCGGATATGGAAATACTTCTCGCTGAA 977
Query 1035 GCAGAAGGTGCCGTGAAGAAGAAGAGAAAACCCAGGAGAGGTGAGGATTTCAAGTTTGGC 1094
| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 978 GGAGAAGGTGCGGTGAAGAAGAAGAGAAAACCCAGGAGAGGTGAGGATTTCAAGCTTGGC 1037
Query 1095 CAAGTTTTTGTCAAGGCAGATTTCTGGCTCCTTTGGTTTGTCTACTTCCTCGGCATGGGT 1154
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1038 CAAGTTTTTGTCAAGGCAGATTTCTGGCTCCTATGGTTTGTCTACTTCCTCGGCATGGGT 1097
Query 1155 TCAGGTGTTACAGTCTCGAACAACTTGGCACAGATCGGATTTGCTTTTGGTATTAAGGAC 1214
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1098 TCAGGTGTTACAGTCTCCAACAATTTGGCACAGATCGGATTTGCTTTTGGTATTAAGGAC 1157
Query 1215 ACAACAATACTCCTGTGTCTTTTCAGTTTCTTCAACTTCATAGGCCGTCTTGCTTCAGGT 1274
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1158 ACAACAATACTCCTCTGTCTCTTCAGTTTCTTCAACTTCATAGGCCGTCTTGCTTCAGGT 1217
Query 1275 GCCATTTCTGAGCACTTTGTGAGGTCAAGAACGCTTCCAAGAACACTATGGATGGGAGCC 1334
|||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1218 GCCATTTCGGAGCACTTTGTGAGGTCAAGAACGCTTCCAAGAACAATATGGATGGGAGCC 1277
Query 1335 GCGCAGCTAGTTATGGTGTTCACATTCCTCCTCTTCGCCATGGCTATCGACCACACCA-- 1392
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1278 GCACAGCTAGTTATGGTGTTCACATTCCTCCTCTTCGCCATGGCTATCGACCACACCACG 1337
Query 1393 T---T-TACGTTGCGACTGCTCTAATCGGAATATGCATGGGGTTTCAGTTCTTATCTATC 1448
| | |||||||| ||||||||||| || ||| ||||||||||||||||||||||||||
Sbjct 1338 TCCATATACGTTGCAACTGCTCTAATTGGGATAGGCATGGGGTTTCAGTTCTTATCTATC 1397
Query 1449 GCAACCATCTCCGAGCTATTTGGTCTTAGACATTTTGGAATCAACTTCAACTTCATACTG 1508
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1398 GCAACCATCTCCGAGCTATTTGGTCTCAGACATTTTGGAATCAACTTCAACTTCATACTC 1457
Query 1509 CTGGGAAACCCGCTTGGTGCCACCATTTTCTCGGCCATTCTCGCAGGATACATCTATGAC 1568
|||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||| |||
Sbjct 1458 CTGGGAAACCCGCTCGGTGCCACCATTTTCTCGGCCTTTCTCGCCGGATACATCTACGAC 1517
Query 1569 AAGGAGGCTGATAAGCAAGGGAAGATGACCTGCATTGGTCCAGATTGCTTCCGAGTAACA 1628
||||||||||||||||||||||| ||||||||||||||||| || ||||| ||||||||
Sbjct 1518 AAGGAGGCTGATAAGCAAGGGAATATGACCTGCATTGGTCCTGACTGCTTTCGAGTAACT 1577
Query 1629 TTCTTGGTTCTAGCCGGTGTTTGTGGGCTTGGAACCCTGCTGAGCATTATTTTGACAGTG 1688
||||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||
Sbjct 1578 TTCTTGGTTCTAGCCGGTGTTTGTGGGCTTGGAACTCTACTGAGCGTTATTTTGACAGTG 1637
Query 1689 AGAATTCGCCCGGTTTATCAAGCTCTATATGCGTCTGGCTCATTCCGGTTGCAGCCGCAA 1748
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1638 AGAATTCGCCCGGTTTATCAAGCCCTCTATGCGTCTGGCTCATTCCGGTTGCAGCCGCAA 1697
Query 1749 TCAACGGGTCATTGATATATCCAGAGAG 1776
||| ||||||| ||||||||||||||||
Sbjct 1698 TCAGCGGGTCAGTGATATATCCAGAGAG 1725
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76523302205
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5