BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G80540.1 Length=1678 Score E Sequences producing significant alignments: (Bits) Value Ahg316907 jgi|Araly1|316907|fgenesh1_pm.C_scaffold_2001940 1110 0.0 > Ahg316907 jgi|Araly1|316907|fgenesh1_pm.C_scaffold_2001940 Length=1389 Score = 1110 bits (601), Expect = 0.0 Identities = 655/682 (96%), Gaps = 0/682 (0%) Strand=Plus/Plus Query 997 TGTGGTTGCGGACACGTGTATGGCTATGGACCAATGGGTGCATGACCCAGCGGCAGACTC 1056 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 708 TGTGGTTGCGGACACGTGTATGGCTATGGACCAATGGGTGCATGACCCAGCGGCAGACTC 767 Query 1057 AGCATTGAGTCAACTTCTTCCGTGTTTAGATCCTAAAACCATTGGAGAGACATTGGATAT 1116 ||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||| Sbjct 768 AGCATTGAGCCAACTTCTTCCATGTTTAGATGCTAAAACCATTGGAGAGACATTGGATAT 827 Query 1117 AACGAAGACGATGACTGCGACGGCCGTTGACATGACCAATGCGTACACGGTCAATGTCAG 1176 |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| Sbjct 828 AACGAAGACGATGACTGCTACGGCCGTCGACATGACCAATGCGTACACGGTCAATGTCAG 887 Query 1177 TAACCATGATCAGTTCCCACCTAATGCCCCTTTCTACCACAACCAGTCTGGTCCGCTCGT 1236 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || Sbjct 888 CAACCATGATCAGTTCCCACCTAATGTCCCTTTCTACCACAACCAGTCTGGTCCGCTTGT 947 Query 1237 TCCTCTTCTCTGTAACCCACTCGACCAAAATCACAAACCGCGGCCTTGTGCTCCCGACGA 1296 |||||| ||||||||||||||||||||||||||||| ||||| ||||||||||| ||||| Sbjct 948 TCCTCTCCTCTGTAACCCACTCGACCAAAATCACAACCCGCGACCTTGTGCTCCGGACGA 1007 Query 1297 AGTCCTCTTAGCCAATGCTTCTCAGGTTTATAAAGGCTATATTTGCCAAGTGAACGCAGA 1356 |||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||| Sbjct 1008 AGTCCTATTAGCCAATGCTTCTCAGGTTTATAAAGGCTATGTGTGCCAAGTGAACGCAGA 1067 Query 1357 AGGAATCTGCACAACGCAGGGGAGGTTAACACAAGGTTCGTACGACCAGATGATGGGTGC 1416 |||||||||||||||||||||||||||||| | || ||| |||||||||||||||||||| Sbjct 1068 AGGAATCTGCACAACGCAGGGGAGGTTAACCCCAGCTTCATACGACCAGATGATGGGTGC 1127 Query 1417 GATCAACGTGGCGTTCACGTTGGACCATTATGGTCCCTTCTTAGCTAGTATTGCGGACTG 1476 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1128 GATCAACGTGGCGTTCACGTTGGACCATTATGGTCCCTTCTTGGCTAGTATTGCGGACTG 1187 Query 1477 TACATTCGTTAGAGACACCTTCAGAGACATAACCACCAAGAACTGCCCTGGACTTAGCAT 1536 ||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1188 TACTTTCGTCAGAGACACCTTCAGAGACATAACCACCAAGAACTGCCCTGGACTCAGCAT 1247 Query 1537 TACAAGTCAGTGGATCTACGCAGGACTCGCGTCGCTCTCTGGTGCAGTCATGTTCTCACT 1596 ||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 1248 TACCAGTCAGTGGATCTACGCAGGACTTGCGTCACTCTCTGGTGCAGTCATGTTCTCACT 1307 Query 1597 CATCTTCTGGTTGATTTTCGTCAGGGAAAGACGTCACCGATCTCAAACCAAAAAGTCTAT 1656 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1308 CATCTTCTGGTTGATTTTTGTCAGGGAAAGACGTCACCGATCTCAAACCAAAAAGTCTAT 1367 Query 1657 GATCCAGATGAATAGATTTTAA 1678 |||||||||||||||||||||| Sbjct 1368 GATCCAGATGAATAGATTTTAA 1389 Score = 643 bits (348), Expect = 0.0 Identities = 374/387 (97%), Gaps = 0/387 (0%) Strand=Plus/Plus Query 538 GATTGGGTCTGCAATGCTGTACACGGGGCAAAACGAGTTCTACGGTAGCGTGGAGAGGAC 597 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 321 GATTGGGTCTGCAATGCTGTACACTGGGCAAAACGAGTTCTACGGTAGCGTGGAGAGGAC 380 Query 598 GTTTATGTACATTGTGAAACAAGCAACTGGAGTTTTGACTAAGCTAACGAGCTTATGGGA 657 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 381 GTTTATGTACATTGTGAAACAAGCAACTGGGGTTTTGACTAAGCTAACGAGCTTATGGGA 440 Query 658 CTCGATTCAATCTGCTAAAGACATTCAGCTCGATGGACACAACCTGTTTCCTCCCGAGTT 717 ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 441 CTCAATTCAATCTGCTAAAGACATTCAGCTCGATGGACATAACCTGTTTCCTCCCGAGTT 500 Query 718 TAGAGGCAACATCGATCATTTCAACAACATGATCAAGATGTCTAACATCACTTACCCCGA 777 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 501 TAGAGGTAACATCGATCATTTCAACAACATGATCAAGATGTCTAACATCACTTACCCCGA 560 Query 778 CCGTGTCGCTAACCAGACAATCCGTTATCTCACCGGAGCACTAAACCCTGTGAGATATGT 837 ||||||||||||||||| || ||||| ||||||||||||||||||||||||||||| || Sbjct 561 TCGTGTCGCTAACCAGACTATTCGTTACCTCACCGGAGCACTAAACCCTGTGAGATACGT 620 Query 838 GTTAAATGTGATCGCTGGTGTAATGCTCGCAGTCGCATTCCTCGGCCTTTTGTTTTCGTT 897 ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| Sbjct 621 GTTAAATGTGATCGCTGGTGTTATGCTCGCAGTCGCATTCCTCGGCCTCTTGTTTTCGTT 680 Query 898 CTGTGGATTGCGAGTTCTTGTCTACCT 924 ||||||| ||||||||||||||||||| Sbjct 681 CTGTGGACTGCGAGTTCTTGTCTACCT 707 Score = 396 bits (214), Expect = 3e-109 Identities = 265/289 (92%), Gaps = 5/289 (2%) Strand=Plus/Plus Query 62 ATGGTTAATAGCGAAACGCCGTCATATCATAGTCGCCGGCGTCTCCTCCTGATCACCGTT 121 ||| || ||| |||||||||||| |||||| |||||||||||||||||||| || ||||| Sbjct 1 ATGATTTATACCGAAACGCCGTCGTATCATGGTCGCCGGCGTCTCCTCCTGGTCGCCGTT 60 Query 122 GGGCTTCTGATCACGTCGAGTTTGGTTTCTTTTTCTCATGCAGTTTCGTCTTCTTGTCAT 181 || ||| ||||| ||||||| ||||||||||| ||||||| |||||| |||||||||||| Sbjct 61 GGACTTTTGATCTCGTCGAGCTTGGTTTCTTTCTCTCATGGAGTTTCTTCTTCTTGTCAT 120 Query 182 CATCGTCCATCCTCTACCTCATTTCAAGGAGTGAGGAGGCAAATTTTGGAAGGAGGGAAT 241 |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct 121 CATCGTCCATCCTCTACCTCATTTCAAGGAGTAAGGAGACAAATTTTGGAAGGAGGGAAT 180 Query 242 GGGACCAGATTGGTGTTAGCGGCGGAGAGGACACAGCGACCTGACCCTCTCAACCATTTC 301 ||||| | ||||||||||||||||||||||||| ||| ||||||||||||||||||||| Sbjct 181 GGGAC-A--TTGGTGTTAGCGGCGGAGAGGACACGGCGGCCTGACCCTCTCAACCATTTC 237 Query 302 AATATTTATGTCGATGGTTGGAACGTTACCAACT-CTCATTACATCGCC 349 |||||||| ||||||||||||||||||||||| | |||||||||||||| Sbjct 238 AATATTTACGTCGATGGTTGGAACGTTACCAA-TACTCATTACATCGCC 285 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 62925084740 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5