BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G80540.1
Length=1678
Score E
Sequences producing significant alignments: (Bits) Value
Ahg316907 jgi|Araly1|316907|fgenesh1_pm.C_scaffold_2001940 1110 0.0
> Ahg316907 jgi|Araly1|316907|fgenesh1_pm.C_scaffold_2001940
Length=1389
Score = 1110 bits (601), Expect = 0.0
Identities = 655/682 (96%), Gaps = 0/682 (0%)
Strand=Plus/Plus
Query 997 TGTGGTTGCGGACACGTGTATGGCTATGGACCAATGGGTGCATGACCCAGCGGCAGACTC 1056
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 708 TGTGGTTGCGGACACGTGTATGGCTATGGACCAATGGGTGCATGACCCAGCGGCAGACTC 767
Query 1057 AGCATTGAGTCAACTTCTTCCGTGTTTAGATCCTAAAACCATTGGAGAGACATTGGATAT 1116
||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 768 AGCATTGAGCCAACTTCTTCCATGTTTAGATGCTAAAACCATTGGAGAGACATTGGATAT 827
Query 1117 AACGAAGACGATGACTGCGACGGCCGTTGACATGACCAATGCGTACACGGTCAATGTCAG 1176
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 828 AACGAAGACGATGACTGCTACGGCCGTCGACATGACCAATGCGTACACGGTCAATGTCAG 887
Query 1177 TAACCATGATCAGTTCCCACCTAATGCCCCTTTCTACCACAACCAGTCTGGTCCGCTCGT 1236
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 888 CAACCATGATCAGTTCCCACCTAATGTCCCTTTCTACCACAACCAGTCTGGTCCGCTTGT 947
Query 1237 TCCTCTTCTCTGTAACCCACTCGACCAAAATCACAAACCGCGGCCTTGTGCTCCCGACGA 1296
|||||| ||||||||||||||||||||||||||||| ||||| ||||||||||| |||||
Sbjct 948 TCCTCTCCTCTGTAACCCACTCGACCAAAATCACAACCCGCGACCTTGTGCTCCGGACGA 1007
Query 1297 AGTCCTCTTAGCCAATGCTTCTCAGGTTTATAAAGGCTATATTTGCCAAGTGAACGCAGA 1356
|||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 1008 AGTCCTATTAGCCAATGCTTCTCAGGTTTATAAAGGCTATGTGTGCCAAGTGAACGCAGA 1067
Query 1357 AGGAATCTGCACAACGCAGGGGAGGTTAACACAAGGTTCGTACGACCAGATGATGGGTGC 1416
|||||||||||||||||||||||||||||| | || ||| ||||||||||||||||||||
Sbjct 1068 AGGAATCTGCACAACGCAGGGGAGGTTAACCCCAGCTTCATACGACCAGATGATGGGTGC 1127
Query 1417 GATCAACGTGGCGTTCACGTTGGACCATTATGGTCCCTTCTTAGCTAGTATTGCGGACTG 1476
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1128 GATCAACGTGGCGTTCACGTTGGACCATTATGGTCCCTTCTTGGCTAGTATTGCGGACTG 1187
Query 1477 TACATTCGTTAGAGACACCTTCAGAGACATAACCACCAAGAACTGCCCTGGACTTAGCAT 1536
||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1188 TACTTTCGTCAGAGACACCTTCAGAGACATAACCACCAAGAACTGCCCTGGACTCAGCAT 1247
Query 1537 TACAAGTCAGTGGATCTACGCAGGACTCGCGTCGCTCTCTGGTGCAGTCATGTTCTCACT 1596
||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1248 TACCAGTCAGTGGATCTACGCAGGACTTGCGTCACTCTCTGGTGCAGTCATGTTCTCACT 1307
Query 1597 CATCTTCTGGTTGATTTTCGTCAGGGAAAGACGTCACCGATCTCAAACCAAAAAGTCTAT 1656
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1308 CATCTTCTGGTTGATTTTTGTCAGGGAAAGACGTCACCGATCTCAAACCAAAAAGTCTAT 1367
Query 1657 GATCCAGATGAATAGATTTTAA 1678
||||||||||||||||||||||
Sbjct 1368 GATCCAGATGAATAGATTTTAA 1389
Score = 643 bits (348), Expect = 0.0
Identities = 374/387 (97%), Gaps = 0/387 (0%)
Strand=Plus/Plus
Query 538 GATTGGGTCTGCAATGCTGTACACGGGGCAAAACGAGTTCTACGGTAGCGTGGAGAGGAC 597
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 321 GATTGGGTCTGCAATGCTGTACACTGGGCAAAACGAGTTCTACGGTAGCGTGGAGAGGAC 380
Query 598 GTTTATGTACATTGTGAAACAAGCAACTGGAGTTTTGACTAAGCTAACGAGCTTATGGGA 657
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 381 GTTTATGTACATTGTGAAACAAGCAACTGGGGTTTTGACTAAGCTAACGAGCTTATGGGA 440
Query 658 CTCGATTCAATCTGCTAAAGACATTCAGCTCGATGGACACAACCTGTTTCCTCCCGAGTT 717
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 441 CTCAATTCAATCTGCTAAAGACATTCAGCTCGATGGACATAACCTGTTTCCTCCCGAGTT 500
Query 718 TAGAGGCAACATCGATCATTTCAACAACATGATCAAGATGTCTAACATCACTTACCCCGA 777
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 501 TAGAGGTAACATCGATCATTTCAACAACATGATCAAGATGTCTAACATCACTTACCCCGA 560
Query 778 CCGTGTCGCTAACCAGACAATCCGTTATCTCACCGGAGCACTAAACCCTGTGAGATATGT 837
||||||||||||||||| || ||||| ||||||||||||||||||||||||||||| ||
Sbjct 561 TCGTGTCGCTAACCAGACTATTCGTTACCTCACCGGAGCACTAAACCCTGTGAGATACGT 620
Query 838 GTTAAATGTGATCGCTGGTGTAATGCTCGCAGTCGCATTCCTCGGCCTTTTGTTTTCGTT 897
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 621 GTTAAATGTGATCGCTGGTGTTATGCTCGCAGTCGCATTCCTCGGCCTCTTGTTTTCGTT 680
Query 898 CTGTGGATTGCGAGTTCTTGTCTACCT 924
||||||| |||||||||||||||||||
Sbjct 681 CTGTGGACTGCGAGTTCTTGTCTACCT 707
Score = 396 bits (214), Expect = 3e-109
Identities = 265/289 (92%), Gaps = 5/289 (2%)
Strand=Plus/Plus
Query 62 ATGGTTAATAGCGAAACGCCGTCATATCATAGTCGCCGGCGTCTCCTCCTGATCACCGTT 121
||| || ||| |||||||||||| |||||| |||||||||||||||||||| || |||||
Sbjct 1 ATGATTTATACCGAAACGCCGTCGTATCATGGTCGCCGGCGTCTCCTCCTGGTCGCCGTT 60
Query 122 GGGCTTCTGATCACGTCGAGTTTGGTTTCTTTTTCTCATGCAGTTTCGTCTTCTTGTCAT 181
|| ||| ||||| ||||||| ||||||||||| ||||||| |||||| ||||||||||||
Sbjct 61 GGACTTTTGATCTCGTCGAGCTTGGTTTCTTTCTCTCATGGAGTTTCTTCTTCTTGTCAT 120
Query 182 CATCGTCCATCCTCTACCTCATTTCAAGGAGTGAGGAGGCAAATTTTGGAAGGAGGGAAT 241
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 121 CATCGTCCATCCTCTACCTCATTTCAAGGAGTAAGGAGACAAATTTTGGAAGGAGGGAAT 180
Query 242 GGGACCAGATTGGTGTTAGCGGCGGAGAGGACACAGCGACCTGACCCTCTCAACCATTTC 301
||||| | ||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 181 GGGAC-A--TTGGTGTTAGCGGCGGAGAGGACACGGCGGCCTGACCCTCTCAACCATTTC 237
Query 302 AATATTTATGTCGATGGTTGGAACGTTACCAACT-CTCATTACATCGCC 349
|||||||| ||||||||||||||||||||||| | ||||||||||||||
Sbjct 238 AATATTTACGTCGATGGTTGGAACGTTACCAA-TACTCATTACATCGCC 285
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62925084740
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5