BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G80550.1 Length=1759 Score E Sequences producing significant alignments: (Bits) Value Ahg477194 jgi|Araly1|477194|fgenesh2_kg.2__2324__AT1G80550.1 1995 0.0 > Ahg477194 jgi|Araly1|477194|fgenesh2_kg.2__2324__AT1G80550.1 Length=1455 Score = 1995 bits (1080), Expect = 0.0 Identities = 1175/1222 (96%), Gaps = 2/1222 (0%) Strand=Plus/Plus Query 121 GATCAGTCCAGTTACGATCAGAAAACAGTATGCGAAGCTCTCACATGTTACAGCAACGAT 180 |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| Sbjct 1 GATCAGTCCAGTTACGATCAGAAAACAGTATGCGAAGCGCTCTCATGTTACAGCAACGAT 60 Query 181 TGGCAAAAGGCGTTGGAGTTTTTCAACTGGGTCGAGAGAGAATCCGGATTCAGACATACC 240 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 61 TGGCAAAAGGCGTTGGAGTTTTTCAACTGGGTCGAGAAAGAATCCGGATTCAGACATACC 120 Query 241 ACCGAGACATTCAATCGGGTGATCGATATTCTGGGTAAGTATTTCGAGTTTGAAATTTCT 300 |||||||||||||||||| |||||||||||||||||||||||||||||||||||| || | Sbjct 121 ACCGAGACATTCAATCGGATGATCGATATTCTGGGTAAGTATTTCGAGTTTGAAACTTGT 180 Query 301 TGGGCTTTGATTAACCGCATGATCGGAAACACGGAATCTGTGCCGAATCACGTCACGTTT 360 |||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||| Sbjct 181 TGGGCTCTGATTAACCGCATGATCGGAAACCCGGAATCTCTGCCGAATCACGTCACGTTC 240 Query 361 CGTATAGTCTTTAAGCGTTATGTGACGGCTCATCTTGTTCAGGAGGCTATTGATGCGTAT 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 CGTATAGTCTTTAAGCGTTATGTGACGGCTCATCTTGTTCAGGAGGCTATTGATGCGTAT 300 Query 421 GATAAATTGGATGATTTCAATTTGAGAGATGAAACATCATTTTATAATCTGGTCGATGCG 480 ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 301 CATAAATTGGATGATTTCAATTTGAGAGATGAAACATCTTTTTATAATCTGGTCGATGCG 360 Query 481 CTTTGCGAGCATAAACATGTGGTTGAAGCTGAAGAGCTTTGTTTTGGGAAGAATGTCATT 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 361 CTTTGCGAGCATAAACATGTGGTTGAAGCTGAAGAGCTTTGTTTTGGGAAGAATGTGATT 420 Query 541 GGTAATGGTTTTAGTGTGAGTAATACTAAGATTCATAATCTGATTCTTCGTGGGTGGTCG 600 | | ||||||||||||| |||||||||||||| || |||||||||||||||||||||||| Sbjct 421 GCTCATGGTTTTAGTGTTAGTAATACTAAGATCCACAATCTGATTCTTCGTGGGTGGTCG 480 Query 601 AAATTGGGATGGTGGGGTAAATGCAAGGAGTATTGGAAGAAGATGGATACTGAAGGTGTT 660 |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| | Sbjct 481 AAATTGGGATGGTGGGGTAAATGCAAGGAGTATTGGGACAAGATGGATACTGAAGGTG-T 539 Query 661 A-CTAAGGATCTTTTTTCGTATTCCATTTACATGGATATCATGTGCAAGAGCGGGAAACC 719 | |||||||||| |||||||| || ||||||||||||||||||||||||||||| ||||| Sbjct 540 AGCTAAGGATCTGTTTTCGTACTCTATTTACATGGATATCATGTGCAAGAGCGGTAAACC 599 Query 720 GTGGAAAGCTGTGAAGTTGTATAAGGAAATGAAGAGTAGAAGGATGAAACTCGATGTGGT 779 ||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||| Sbjct 600 GTGGAAAGCTGTGAAATTGTATAAGGAAATGAAGAGTAGAAGGATCAAACTTGATGTGGT 659 Query 780 TGCTTATAACACTGTGATTCGAGCCATTGGAGCGTCGCAAGGTGTTGAATTCGGTATCAG 839 ||| ||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||| Sbjct 660 TGCGTATAACACTGTCATTCGGGCCATTGGAGCGTCGCAAGGTGTTGAATTCAGTATCAG 719 Query 840 GGTATTTCGGGAGATGAGGGAAAGAGGTTGTGAACCTAATGTTGCGACTCATAACACAAT 899 ||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct 720 GGTGTTTCGGGAGATGAGAGAAAGAGGTTGTGAACCTAATGTTGCCACTCATAACACAAT 779 Query 900 CATTAAGCTTCTATGTGAAGACGGGAGGATGAGAGACGCGTATCGGATGCTTGATGAGAT 959 ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct 780 CATTAAGCTTCTATGTGAAGATGGGAGGATGAGGGACGCGTATCGGATGCTTGATGAGAT 839 Query 960 GCCTAAGAGAGGTTGTCAACCCGATTCGATTACTTACATGTGTCTCTTTTCCCGTTTGGA 1019 |||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||| Sbjct 840 GCCTAAGAAAGGTTTTCAACCCGATTCGATTACTTACATGTGTCTCTTTTCACGTTTGGA 899 Query 1020 GAAACCGAGTGAGATCCTAAGTCTGTTTGGTAGGATGATAAGGAGTGGAGTGAGGCCAAA 1079 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 900 GAAACCGAGTGAGATCCTAAGTCTGTTTGGTAGGATGATAAGGAGTGGAGTGAGGCCAAA 959 Query 1080 GATGGATACTTATGTGATGCTAATGAGGAAGTTTGAGAGATGGGGATTTCTTCAGCCGGT 1139 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 960 AATGGATACTTATGTGATGCTAATGAGGAAGTTTGAGAGATGGGGATTTCTGCAGCCGGT 1019 Query 1140 ATTATATGTGTGGAAGACAATGAAAGAGTCTGGGGATACTCCTGATTCAGCGGCGTATAA 1199 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1020 TTTATATGTGTGGAAGACAATGAAAGAGTCTGGGGATACTCCTGATTCAGCGGCATATAA 1079 Query 1200 TGCTGTGATTGATGCGTTGATTCAGAAAGGAATGTTGGATATGGCTAGGGAATATGAGGA 1259 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1080 TGCTGTGATTGATGCGTTGATTCAGAAAGGAATGTTGGATATGGCTAGGGAATATGAGGA 1139 Query 1260 GGAAATGATCGAAAGAGGGCTATCTCCAAGGAGAAGGCCTGAGTTGGTAGAAAAGTCCTT 1319 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1140 GGAAATGATCGAAAGAGGGCTATCTCCAAGAAGAAGGCCTGAGTTGGTAGAAAAGTCCTT 1199 Query 1320 GGACGAAACGCTTGTCTGTAGA 1341 ||||||||||||||| |||||| Sbjct 1200 GGACGAAACGCTTGTTTGTAGA 1221 Score = 267 bits (144), Expect = 3e-70 Identities = 205/234 (88%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 1414 CCTTTTGGATGGAGAAATCTCCCCAAGGTATATCATC-TTTGCCATAAAGTGGCTTTGTT 1472 |||||||| || |||||| |||||||||| || |||| ||| |||||||||| || |||| Sbjct 1225 CCTTTTGGTTGAAGAAATGTCCCCAAGGTGTACCATCATTT-CCATAAAGTGCCTGTGTT 1283 Query 1473 TCAACTCAAAACCGAGGAGAAAACACTGAGGTTCATTGAGAAATCTGGTTGAGTTGTGTG 1532 |||||||||||| || |||||||||||||||||||||||||||| |||| | |||||||| Sbjct 1284 TCAACTCAAAACTGAAGAGAAAACACTGAGGTTCATTGAGAAATTTGGTGGTGTTGTGTG 1343 Query 1533 TCTTAAGCCAAATTCCGAAGATTTGGTTTTGAAAGATGGTTTGTCGCCTCCT-A-TATGT 1590 ||| |||||||| |||||| ||||||||||| |||||||||||||||||||| | || | Sbjct 1344 TCTCAAGCCAAAATCCGAATATTTGGTTTTGGAAGATGGTTTGTCGCCTCCTAAGGATAT 1403 Query 1591 GTTCTACTACATATACGTACCATTTGTAATTCACTCTCTAACTTAAtttttttt 1644 || || || || |||||||||||||||||||||||| ||||||||||||||| Sbjct 1404 TTTGTA--ACGTACACGTACCATTTGTAATTCACTCTCCAACTTAATTTTTTTT 1455 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 66010394585 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5