BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G80550.1
Length=1759
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477194 jgi|Araly1|477194|fgenesh2_kg.2__2324__AT1G80550.1 1995 0.0
> Ahg477194 jgi|Araly1|477194|fgenesh2_kg.2__2324__AT1G80550.1
Length=1455
Score = 1995 bits (1080), Expect = 0.0
Identities = 1175/1222 (96%), Gaps = 2/1222 (0%)
Strand=Plus/Plus
Query 121 GATCAGTCCAGTTACGATCAGAAAACAGTATGCGAAGCTCTCACATGTTACAGCAACGAT 180
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 1 GATCAGTCCAGTTACGATCAGAAAACAGTATGCGAAGCGCTCTCATGTTACAGCAACGAT 60
Query 181 TGGCAAAAGGCGTTGGAGTTTTTCAACTGGGTCGAGAGAGAATCCGGATTCAGACATACC 240
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 61 TGGCAAAAGGCGTTGGAGTTTTTCAACTGGGTCGAGAAAGAATCCGGATTCAGACATACC 120
Query 241 ACCGAGACATTCAATCGGGTGATCGATATTCTGGGTAAGTATTTCGAGTTTGAAATTTCT 300
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |
Sbjct 121 ACCGAGACATTCAATCGGATGATCGATATTCTGGGTAAGTATTTCGAGTTTGAAACTTGT 180
Query 301 TGGGCTTTGATTAACCGCATGATCGGAAACACGGAATCTGTGCCGAATCACGTCACGTTT 360
|||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 181 TGGGCTCTGATTAACCGCATGATCGGAAACCCGGAATCTCTGCCGAATCACGTCACGTTC 240
Query 361 CGTATAGTCTTTAAGCGTTATGTGACGGCTCATCTTGTTCAGGAGGCTATTGATGCGTAT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CGTATAGTCTTTAAGCGTTATGTGACGGCTCATCTTGTTCAGGAGGCTATTGATGCGTAT 300
Query 421 GATAAATTGGATGATTTCAATTTGAGAGATGAAACATCATTTTATAATCTGGTCGATGCG 480
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 301 CATAAATTGGATGATTTCAATTTGAGAGATGAAACATCTTTTTATAATCTGGTCGATGCG 360
Query 481 CTTTGCGAGCATAAACATGTGGTTGAAGCTGAAGAGCTTTGTTTTGGGAAGAATGTCATT 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 361 CTTTGCGAGCATAAACATGTGGTTGAAGCTGAAGAGCTTTGTTTTGGGAAGAATGTGATT 420
Query 541 GGTAATGGTTTTAGTGTGAGTAATACTAAGATTCATAATCTGATTCTTCGTGGGTGGTCG 600
| | ||||||||||||| |||||||||||||| || ||||||||||||||||||||||||
Sbjct 421 GCTCATGGTTTTAGTGTTAGTAATACTAAGATCCACAATCTGATTCTTCGTGGGTGGTCG 480
Query 601 AAATTGGGATGGTGGGGTAAATGCAAGGAGTATTGGAAGAAGATGGATACTGAAGGTGTT 660
|||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
Sbjct 481 AAATTGGGATGGTGGGGTAAATGCAAGGAGTATTGGGACAAGATGGATACTGAAGGTG-T 539
Query 661 A-CTAAGGATCTTTTTTCGTATTCCATTTACATGGATATCATGTGCAAGAGCGGGAAACC 719
| |||||||||| |||||||| || ||||||||||||||||||||||||||||| |||||
Sbjct 540 AGCTAAGGATCTGTTTTCGTACTCTATTTACATGGATATCATGTGCAAGAGCGGTAAACC 599
Query 720 GTGGAAAGCTGTGAAGTTGTATAAGGAAATGAAGAGTAGAAGGATGAAACTCGATGTGGT 779
||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 600 GTGGAAAGCTGTGAAATTGTATAAGGAAATGAAGAGTAGAAGGATCAAACTTGATGTGGT 659
Query 780 TGCTTATAACACTGTGATTCGAGCCATTGGAGCGTCGCAAGGTGTTGAATTCGGTATCAG 839
||| ||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 660 TGCGTATAACACTGTCATTCGGGCCATTGGAGCGTCGCAAGGTGTTGAATTCAGTATCAG 719
Query 840 GGTATTTCGGGAGATGAGGGAAAGAGGTTGTGAACCTAATGTTGCGACTCATAACACAAT 899
||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 720 GGTGTTTCGGGAGATGAGAGAAAGAGGTTGTGAACCTAATGTTGCCACTCATAACACAAT 779
Query 900 CATTAAGCTTCTATGTGAAGACGGGAGGATGAGAGACGCGTATCGGATGCTTGATGAGAT 959
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 780 CATTAAGCTTCTATGTGAAGATGGGAGGATGAGGGACGCGTATCGGATGCTTGATGAGAT 839
Query 960 GCCTAAGAGAGGTTGTCAACCCGATTCGATTACTTACATGTGTCTCTTTTCCCGTTTGGA 1019
|||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 840 GCCTAAGAAAGGTTTTCAACCCGATTCGATTACTTACATGTGTCTCTTTTCACGTTTGGA 899
Query 1020 GAAACCGAGTGAGATCCTAAGTCTGTTTGGTAGGATGATAAGGAGTGGAGTGAGGCCAAA 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 GAAACCGAGTGAGATCCTAAGTCTGTTTGGTAGGATGATAAGGAGTGGAGTGAGGCCAAA 959
Query 1080 GATGGATACTTATGTGATGCTAATGAGGAAGTTTGAGAGATGGGGATTTCTTCAGCCGGT 1139
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 960 AATGGATACTTATGTGATGCTAATGAGGAAGTTTGAGAGATGGGGATTTCTGCAGCCGGT 1019
Query 1140 ATTATATGTGTGGAAGACAATGAAAGAGTCTGGGGATACTCCTGATTCAGCGGCGTATAA 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1020 TTTATATGTGTGGAAGACAATGAAAGAGTCTGGGGATACTCCTGATTCAGCGGCATATAA 1079
Query 1200 TGCTGTGATTGATGCGTTGATTCAGAAAGGAATGTTGGATATGGCTAGGGAATATGAGGA 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 TGCTGTGATTGATGCGTTGATTCAGAAAGGAATGTTGGATATGGCTAGGGAATATGAGGA 1139
Query 1260 GGAAATGATCGAAAGAGGGCTATCTCCAAGGAGAAGGCCTGAGTTGGTAGAAAAGTCCTT 1319
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1140 GGAAATGATCGAAAGAGGGCTATCTCCAAGAAGAAGGCCTGAGTTGGTAGAAAAGTCCTT 1199
Query 1320 GGACGAAACGCTTGTCTGTAGA 1341
||||||||||||||| ||||||
Sbjct 1200 GGACGAAACGCTTGTTTGTAGA 1221
Score = 267 bits (144), Expect = 3e-70
Identities = 205/234 (88%), Gaps = 6/234 (3%)
Strand=Plus/Plus
Query 1414 CCTTTTGGATGGAGAAATCTCCCCAAGGTATATCATC-TTTGCCATAAAGTGGCTTTGTT 1472
|||||||| || |||||| |||||||||| || |||| ||| |||||||||| || ||||
Sbjct 1225 CCTTTTGGTTGAAGAAATGTCCCCAAGGTGTACCATCATTT-CCATAAAGTGCCTGTGTT 1283
Query 1473 TCAACTCAAAACCGAGGAGAAAACACTGAGGTTCATTGAGAAATCTGGTTGAGTTGTGTG 1532
|||||||||||| || |||||||||||||||||||||||||||| |||| | ||||||||
Sbjct 1284 TCAACTCAAAACTGAAGAGAAAACACTGAGGTTCATTGAGAAATTTGGTGGTGTTGTGTG 1343
Query 1533 TCTTAAGCCAAATTCCGAAGATTTGGTTTTGAAAGATGGTTTGTCGCCTCCT-A-TATGT 1590
||| |||||||| |||||| ||||||||||| |||||||||||||||||||| | || |
Sbjct 1344 TCTCAAGCCAAAATCCGAATATTTGGTTTTGGAAGATGGTTTGTCGCCTCCTAAGGATAT 1403
Query 1591 GTTCTACTACATATACGTACCATTTGTAATTCACTCTCTAACTTAAtttttttt 1644
|| || || || |||||||||||||||||||||||| |||||||||||||||
Sbjct 1404 TTTGTA--ACGTACACGTACCATTTGTAATTCACTCTCCAACTTAATTTTTTTT 1455
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66010394585
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5