BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G80555.1

Length=714
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg927449 jgi|Araly1|927449|scaffold_203010.1                        544    4e-154


> Ahg927449 jgi|Araly1|927449|scaffold_203010.1
Length=1255

 Score =  544 bits (294),  Expect = 4e-154
 Identities = 341/363 (94%), Gaps = 5/363 (1%)
 Strand=Plus/Plus

Query  34   AGTCTTTGTTGTAGTAAATGGCGGGAGTCATCCACGTCAGCAGTACCCAGATTCCGGTTG  93
            ||||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct  4    AGTCTTTGTTGTACTAAATGGCGGGATTCATCCACGTCAGCAGTACCCAGTTTCCGGTTG  63

Query  94   CGTTTATGTCCGCAACCAAACAGAGCTTTA-G-G-AGAGCTTCTGTGATCAGATGTGCCG  150
            ||||||||||||||||||||| |||||||| | | ||||| |||||||||||||||||||
Sbjct  64   CGTTTATGTCCGCAACCAAACGGAGCTTTAGGAGAAGAGCGTCTGTGATCAGATGTGCCG  123

Query  151  CCAACACTCCAAAGAAACGGTACACCATCGCGGTTCTTCCCGGCGATGGCGTCGGTAACG  210
            |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  124  CCAACACTCCGAAGAAACGGTACACCATCGCGGTGCTTCCCGGCGATGGCGTCGGTAACG  183

Query  211  AAGTGATCCCAGTCGCTGTTGACGTTCTTTGTTTAGCTGGGTCTCTTGAAGGGATAGATT  270
            |||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct  184  AAGTCATCCCAGTCGCTGTGGATGTTCTTTGTTTAGCTGGGTCTCTTGAAGGGATAGATT  243

Query  271  TTAGCTTCGAGGAGTTGCCTATAGGAGGTGTTGCTTTAGATCTTGTCGGAGTTCCACTGC  330
            |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct  244  TTAGCTTCAAGGAGTTGCCTATAGGAGGTGTTGCTTTAGATCTTGTCGGAGTTCCATTAC  303

Query  331  CTAAGGAAACATTGATCA-GGGCAAAGCAATCAGACGCTCTTCTTCTCGGAGCTGTTGGA  389
            |  |||||||||||| || ||||||| |||||||||||| ||||||||||||||||||||
Sbjct  304  CGGAGGAAACATTGA-CAAGGGCAAAACAATCAGACGCTGTTCTTCTCGGAGCTGTTGGA  362

Query  390  TGG  392
            |||
Sbjct  363  TGG  365


 Score =  145 bits (78),  Expect = 5e-34
 Identities = 80/81 (99%), Gaps = 0/81 (0%)
 Strand=Plus/Plus

Query  465  GGCCGAAATGGGATAACAATCCCAAGCATTTGAAGCCGATAACGGCCTTGTTGCAGCTTC  524
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  364  GGCCGAAATGGGATAACAATCCGAAGCATTTGAAGCCGATAACGGCCTTGTTGCAGCTTC  423

Query  525  GTGCGGCTCTTCAAGTATTTG  545
            |||||||||||||||||||||
Sbjct  424  GTGCGGCTCTTCAAGTATTTG  444



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26266689813


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5