BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G80560.1
Length=1460
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477193 jgi|Araly1|477193|fgenesh2_kg.2__2323__AT1G80560.1 2204 0.0
Ahg488253 jgi|Araly1|488253|fgenesh2_kg.6__1387__AT5G14200.1 1114 0.0
Ahg473708 jgi|Araly1|473708|fgenesh2_kg.1__3662__AT5G14200.1 1098 0.0
> Ahg477193 jgi|Araly1|477193|fgenesh2_kg.2__2323__AT1G80560.1
Length=1403
Score = 2204 bits (1193), Expect = 0.0
Identities = 1337/1407 (95%), Gaps = 7/1407 (0%)
Strand=Plus/Plus
Query 54 AATCCTTTCTCCCTGAAATGGCGGCGGCTCTGCAGACGAATATCCGGACGGTCAAGGTTC 113
|||||||| ||||| |||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 1 AATCCTTTGTCCCTAAAATGGCGGCGGCTCTGCAGACGAATATCCGGCCGGTGAAGGTTC 60
Query 114 CGGCTACGTTCAGAGCTGT-AAGTAAACAGTCATTGGCACCCTTTAGAGTAAGATGTGCT 172
|||| |||||||||||||| || ||||| ||||| ||||||||||||| |||||| |||
Sbjct 61 CGGCAACGTTCAGAGCTGTCAA-CAAACAATCATTTGCACCCTTTAGAGCAAGATGCGCT 119
Query 173 GTTGCTTCCCCTGGTAAAAAACGATACACCATCACTCTCCTTCCCGGAGACGGCATCGGT 232
||||| |||||||| ||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 120 GTTGCATCCCCTGGAAAAAAACGATACAACATCACTCTCCTTCCCGGTGACGGCATCGGT 179
Query 233 CCGGAGGTTGTCTCCATTGCCAAAAATGTGCTTCAGCAAGCTGGATCTTTGGAAGGAGTG 292
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 180 CCGGAGGTTGTCTCTATTGCCAAAAATGTGCTTCAGCAAGCTGGATCCTTGGAAGGAGTG 239
Query 293 GAATTTAACTTCCGTGAGATGCCCATTGGAGGAGCTGCTTTGGATTTGGTCGGAGTGCCC 352
||||||| |||||| |||||||| || || |||||||||||||||||||||||||| |||
Sbjct 240 GAATTTAGCTTCCGCGAGATGCCAATAGGTGGAGCTGCTTTGGATTTGGTCGGAGTTCCC 299
Query 353 TTGCCGGAGGAGACTATCTCAGCTGCAAAAGAATCAGATGCAGTGCTTCTTGGAGCCATT 412
|||||||||||||| ||| ||||||| | ||||||||||||| |||||||||||||||||
Sbjct 300 TTGCCGGAGGAGACCATCGCAGCTGCTACAGAATCAGATGCACTGCTTCTTGGAGCCATT 359
Query 413 GGAGGGTACAAATGGGATAACAATGAAAAACATCTGAGGCCTGAGAAGGGGTTACTTCAG 472
||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 360 GGAGGGTACAAGTGGGATAACAATGAAAAACATCTGAGGCCTGAGACGGGGTTACTTCAG 419
Query 473 ATTCGTGCAGCTCTCAAAGTCTTTGCAAATCTGAGACCTGCTACAGTCCTCCCACAGTTA 532
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 420 ATTCGTGCCGCTCTCAAAGTCTTTGCAAATCTGAGACCTGCTACAGTTCTCCCACAGTTA 479
Query 533 GTGGATGCTTCCACCTTAAAGAGAGAGGTAGCAGAAGGTGTTGATCTAATGGTTGTAAGG 592
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 480 GTGGATGCTTCCACCTTGAAGAGAGAAGTAGCAGAAGGTGTTGATCTAATGGTTGTAAGG 539
Query 593 GAGCTTACAGGAGGTATTTACTTTGGAGAGCCAAGGGGCATAAAGACCAATGAAAATGGC 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GAGCTTACAGGAGGTATTTACTTTGGAGAGCCAAGGGGCATAAAGACCAATGAAAATGGC 599
Query 653 GAGGAAGTTGGGTTTAATACTGAGGTTTATGCTGCTCACGAGATTGATAGAATTGCTCGT 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GAGGAAGTTGGGTTTAATACTGAGGTTTATGCTGCTCACGAGATTGATAGAATTGCTCGT 659
Query 713 GTTGCCTTCGAGACTGCTCGGAAACGGCGTGGCAAGCTGTGTTCTGTTGACAAAGCTAAT 772
|||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 660 GTTGCCTTTGAGACTGCTCGGAAACGGCGCGGCAAGCTGTGTTCTGTCGACAAAGCTAAT 719
Query 773 GTTTTGGAAGCCTCAATCTTATGGAGGAAACGAGTAACAGCATTAGCCTCTGAATATCCT 832
|| ||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 720 GTCTTGGACGCCTCAATCTTATGGAGAAAACGAGTGACAGCATTAGCCTCTGAATATCCT 779
Query 833 GATGTTGAGCTGTCACATATGTATGTTGACAATGCCGCGATGCAGCTTGTTCGTGACCCA 892
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 780 GATGTTGAGCTGTCACATATGTATGTTGACAATGCCGCGATGCAGCTTGTCCGTGACCCA 839
Query 893 AAACAGTTTGACACCATCGTCACAAACAACATTTTTGGTGATATATTATCCGATGAAGCT 952
|||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||
Sbjct 840 AAACAGTTTGACACCATCGTTACCAACAACATCTTTGGTGATATATTATCCGATGAAGCT 899
Query 953 TCAATGATCACAGGAAGCATAGGAATGCTGCCATCTGCTAGTCTCAGTGATTCGGGACCT 1012
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 900 TCAATGATCACAGGAAGCATTGGAATGCTGCCATCTGCTAGTCTCAGTGATTCGGGACCT 959
Query 1013 GGACTCTTTGAACCTATACATGGTTCTGCACCTGATATTGCTGGACAGGATAAGGCAAAC 1072
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 GGACTCTTTGAACCTATACATGGTTCTGCACCTGATATTGCTGGACAGGATAAGGCAAAC 1019
Query 1073 CCATTGGCAACCATTCTAAGCGCTGCAATGCTTCTGAAATACGGACTTGGAGAAGAAAAG 1132
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 CCATTGGCAACCATTCTCAGCGCTGCAATGCTTCTGAAATACGGACTTGGAGAAGAAAAG 1079
Query 1133 GCAGCCAAGAGAATTGAAGACGCAGTGTTGGTTGCTCTGAACAACGGATTCAGAACTGGA 1192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 GCAGCCAAGAGAATTGAAGACGCAGTGTTGGTTGCTCTGAACAACGGATTCAGAACTGGA 1139
Query 1193 GACATATACTCCGCGGGAACAAAACTGGTGGGCTGCAAGGAGATGGGAGAGGAGGTTCTG 1252
|| || |||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1140 GATATTTACTCCGCAGGAACAAAACTGGTGGGCTGCAAGGAGATGGGAGAAGAGGTTCTG 1199
Query 1253 AAGTCAGTGGACTCCCAAGTTCCAGCTTCTGTTTAATATTTGTAGAAACTTTGAAGAGTT 1312
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1200 AAGTCAGTGGACTCCCAAGTTCCTGCTTCTGTTTAATATTTGTAGAAACTTTGAAGAGTT 1259
Query 1313 CATTTCCAACAACAAATGTTGTAC-CTT-GTACTCAAAGAGTCTCGGTTTTATTAGCGAT 1370
|||||||||||| ||||||||||| | | || |||||||| ||||||| || |||||
Sbjct 1260 CATTTCCAACAATAAATGTTGTACGCAAAG-AC-CAAAGAGTATCGGTTTCATCAGCGAA 1317
Query 1371 TTTTATAATGTGAGATTATTAGAGGGACTTATTTGATCGAACTGAAACGTTGATGttttt 1430
||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1318 TTTTAAAATGTGAAATTATTAGAGGGACTTATTTGATCGAACTGAAACGTTGGTGTTTTT 1377
Query 1431 ttCTGAGAAATAAATATCCTTGTGGAG 1457
| |||| ||| ||||||||||||||||
Sbjct 1378 T-CTGAAAAACAAATATCCTTGTGGAG 1403
> Ahg488253 jgi|Araly1|488253|fgenesh2_kg.6__1387__AT5G14200.1
Length=1541
Score = 1114 bits (603), Expect = 0.0
Identities = 967/1143 (85%), Gaps = 23/1143 (2%)
Strand=Plus/Plus
Query 162 TAAGATGTGCTGTTGCTTCCCCTGGTAAAAAACGATACACCATCACTCTCCTTCCCGGAG 221
|||| || |||| ||||| || || |||||||| || | ||| |||| |||||||| |
Sbjct 114 TAAGGTGCGCTGCGGCTTCACCAGGGAAAAAACGGTATAATATCGCTCTGCTTCCCGGCG 173
Query 222 ACGGCATCGGTCCGGAGGTTGTCTCCATTGCCAAAAATGTGCTTCAGCAAGCTGGATCTT 281
|||| || ||||| || ||| |||| |||| || |||||||||||| |||||||||||
Sbjct 174 ACGGTATTGGTCCAGAAGTTATCTCTGTTGCTAAGAATGTGCTTCAGAAAGCTGGATCTC 233
Query 282 TGGAAGGAGTGGAATTTAACTTCC-GTGAGATGCCCATTGGAGGAGCTGCTTTGGATTTG 340
| |||||| |||| ||| | |||| | |||||||| | |||||||| || |||||||||
Sbjct 234 TCGAAGGACTGGAGTTTGATTTCCAG-GAGATGCCTGTCGGAGGAGCAGCCTTGGATTTG 292
Query 341 GTCGGAGTGCCCTTGCCGGAGGAGACTATCTCAGCTGCAAAAGAATCAGATG-CAGTGCT 399
|||||||| || |||| ||||| ||| || | ||||||||| |||| |||| || | ||
Sbjct 293 GTCGGAGTTCCAATGCCTGAGGAAACTTTCACGGCTGCAAAACAATCTGATGCCA-TTCT 351
Query 400 TCTTGGAGCCATTGGAGGGTACAAATGGGATAACAATGAAAAACATCTGAGGCCTGAGAA 459
||||||||| |||||||||||||||||||| || ||||| ||||||||||| |||||| |
Sbjct 352 TCTTGGAGCTATTGGAGGGTACAAATGGGACAAGAATGAGAAACATCTGAGACCTGAG-A 410
Query 460 GGGGT-TACTTCAGATTCG-TGCAGCTCTCAAAGTCTTTGCAAATCTGAGACCTGCTACA 517
|| | | || | |||| | || ||||||||||||||| ||| ||||||||||||||
Sbjct 411 TGGCTCTGTTTTACCTTCGAAG-AGATCTCAAAGTCTTTGCTAATTTGAGACCTGCTACA 469
Query 518 GTCCTCCCACAGTTAGTGGATGCTTCCAC-CTTAAAGAGAGAGGTAGCAGAAGGTGTTGA 576
|| | |||||| |||| ||||||||||| | | |||| ||| |||||||||||||||||
Sbjct 470 GTTTTGCCACAGCTAGTTGATGCTTCCACAC-TGAAGAAAGAAGTAGCAGAAGGTGTTGA 528
Query 577 TCTAATGGTTGTAAGGGAGCTTACAGGAGGTATTTACTTTGGAGAGCCAAGGGGCATAAA 636
| | ||| |||| |||||||| ||||||||||||||||||||||||||||| || || ||
Sbjct 529 TATGATGATTGTTAGGGAGCTCACAGGAGGTATTTACTTTGGAGAGCCAAGAGGTATCAA 588
Query 637 GACCAATGAAAATGGCGAGGAAGTTGGGTTTAATACTGAGGTTTATGCTGCTCACGA-G- 694
|| ||||||||||||||| ||||| || ||| ||| ||| | |||||||||||||| |
Sbjct 589 GATCAATGAAAATGGCGAAGAAGTCGGCATTAGTACAGAGATCTATGCTGCTCACGAGGT 648
Query 695 -----A--TTGATAGAATTGCTCGTGTTGCCTTCGAGACTGCTCGGAAACGGCGTGGCAA 747
| |||| ||||||||||||||||| |||||||||||| ||||| ||||||||||
Sbjct 649 ACTAAACCTTGACAGAATTGCTCGTGTTGCATTCGAGACTGCTAGGAAAAGGCGTGGCAA 708
Query 748 GCTGTGTTCTGTTGACAAAGCTAATGTTTTGGAAGCCTCAATCTTATGGAGGAAACGAGT 807
||||||||| || |||||||| ||||| ||||| || ||||| || ||||||||| ||||
Sbjct 709 GCTGTGTTCGGTCGACAAAGCCAATGTGTTGGATGCATCAATATTGTGGAGGAAAAGAGT 768
Query 808 AACAGCATTAGCCTCTGAATATCCTGATGTTGAGCTGTCACATATGTATGTTGACAATGC 867
|||||| |||||||||||||||||||||||||| || |||||||||||||| || |||||
Sbjct 769 AACAGCTTTAGCCTCTGAATATCCTGATGTTGAACTATCACATATGTATGTCGATAATGC 828
Query 868 CGCGATGCAGCTTGTTCGTGACCCAAAACAGTTTGACACCATCGTCACAAACAACATTTT 927
|| ||||||||| | |||||||| |||||||||||||| |||||||| || ||||||||
Sbjct 829 TGCAATGCAGCTTATCCGTGACCCGAAACAGTTTGACACAATCGTCACCAATAACATTTT 888
Query 928 TGGTGATATATTATCCGATGAAGCTTCAATGATCACAGGAAGCATAGGAATGCTGCCATC 987
||||||||||| || |||||||||||||||||||| |||||||| |||||||| |||||
Sbjct 889 CGGTGATATATTGTCTGATGAAGCTTCAATGATCACTGGAAGCATTGGAATGCTTCCATC 948
Query 988 TGCTAGTCTCAGTGATTCGGGACCTGGACTCTTTGAACCTATACATGGTTCTGCACCTGA 1047
||| |||||| |||| ||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 949 TGCAAGTCTCGGTGAATCGGGACCTGGACTCTTTGAACCTATACATGGTTCAGCACCAGA 1008
Query 1048 TATTGCTGGACAGGATAAGGCAAACCCATTGGCAACCATTCTAAGCGCTGCAATGCTTCT 1107
||| |||||||| || || |||||||||||||| |||||||| ||||| || ||||||||
Sbjct 1009 TATAGCTGGACAAGACAAAGCAAACCCATTGGCCACCATTCTCAGCGCGGCGATGCTTCT 1068
Query 1108 GAAATACGGACTTGGAGAAGAAAAGGCAGCCAAGAGAATTGAAGACGCAGT-GTTGGTTG 1166
||| || |||||||||||||||||||| || ||||| ||||||||||| || || || ||
Sbjct 1069 GAAGTATGGACTTGGAGAAGAAAAGGCTGCAAAGAGGATTGAAGACGCGGTCGT-GGATG 1127
Query 1167 CTCTGAACAACGGATTCAGAACTGGAGACATATACTCCGCGGGAACA-AAACTGGTGGGC 1225
|||||||||| || |||||||| |||||||| |||||| | |||| | |||||||||||
Sbjct 1128 CTCTGAACAAAGGGTTCAGAACCGGAGACATCTACTCCCCCGGAA-ATAAACTGGTGGGA 1186
Query 1226 TGCAAGGAGATGGGAGAGGAGGTTCTGAAGTCAGTGGACTCCCAAGTTCCAGCTTCTGTT 1285
|||||||| ||||| ||||||||||| || |||||||| ||| ||||||||||| |||||
Sbjct 1187 TGCAAGGAAATGGGTGAGGAGGTTCTCAAATCAGTGGAATCCAAAGTTCCAGCTACTGTT 1246
Query 1286 TAA 1288
|||
Sbjct 1247 TAA 1249
> Ahg473708 jgi|Araly1|473708|fgenesh2_kg.1__3662__AT5G14200.1
Length=1439
Score = 1098 bits (594), Expect = 0.0
Identities = 952/1125 (85%), Gaps = 24/1125 (2%)
Strand=Plus/Plus
Query 176 GCTTCCCCTGGT-AAAAAACGATACACCATCACTCTCCTTCCCGGAGACGGCATCGGTCC 234
||||| || ||| |||||||| || | |||| |||| |||||||| || || ||||||||
Sbjct 109 GCTTCACC-GGTGAAAAAACGGTATAACATCGCTCTGCTTCCCGGCGATGGTATCGGTCC 167
Query 235 GGAGGTTGTCTCCATTGCCAAAAATGTGCTTCAGCAAGCTGGATCTT-TGGAAGGAGTGG 293
|| ||| | || |||| || |||||||||||| ||||||| | || | ||||| |||
Sbjct 168 CGAAGTTATATCTGTTGCTAAGAATGTGCTTCAGAAAGCTGGGT-TTCTCCAAGGACTGG 226
Query 294 AATTTAACTTCC-GTGAGATGCCCATT-GGAGGAGCTGCTTTGGATTTGGTCGGAGTGCC 351
| ||| | |||| | |||||| || || |||||||| || ||||||||||||||||| |
Sbjct 227 AGTTTGATTTCCAG-GAGATG-CCTTTCGGAGGAGCAGCCTTGGATTTGGTCGGAGT-TC 283
Query 352 CT-TGCCGGAGGAGACTAT-CTCAGCTGCAAAAGAATCAGATGCAGTGCTTCTTGGAGCC 409
|| |||||||||| ||| | | | ||||||||| | || ||||| || |||||||||||
Sbjct 284 CTCTGCCGGAGGAAACT-TCCACGGCTGCAAAACAGTCTGATGCCGTTCTTCTTGGAGCT 342
Query 410 ATTGGAGGGTACAAATGGGATAACAATGAAAAACATCTGAGGCCTGAGAAGGGGT-TACT 468
|| ||||||||||||||||| || ||||| ||||||||||| |||||| | |||| | ||
Sbjct 343 ATCGGAGGGTACAAATGGGACAAGAATGAGAAACATCTGAGACCTGAG-ATGGGTCT-CT 400
Query 469 T-CAGATTCG-TGCAGCTCTCAAAGTCTTTGCAAATCTGAGACCTGCTACAGTCCTCCCA 526
| || |||| | || ||||||||||||||| ||| |||||||||||||||| | |||
Sbjct 401 TACACCTTCGAAG-AGATCTCAAAGTCTTTGCTAATTTGAGACCTGCTACAGTTTTGCCA 459
Query 527 CAGTTAGTGGATGCTTCCAC-CTTAAAGAGAGAGGTAGCAGAAGGTGTTGATCTAATGGT 585
||| |||| ||||||||||| | | |||| ||| |||||| ||||||||||| | ||| |
Sbjct 460 CAGCTAGTTGATGCTTCCACAC-TGAAGAAAGAAGTAGCACAAGGTGTTGATATGATGAT 518
Query 586 TGTAAGGGAGCTTACAGGAGGTATTTACTTTGGAGAGCCAAGGGGCATAAAGACCAATGA 645
|||||||||||| | |||||||||||||||||||||||||| ||||| | | ||||||
Sbjct 519 TGTAAGGGAGCTCATTGGAGGTATTTACTTTGGAGAGCCAAGAGGCATTACCATCAATGA 578
Query 646 AAATGGCGAGGAAGTTGGGT-TTAATACTGAGGTTTATGCTGCTCACGAGATTGATAGAA 704
||||||||| |||| | ||| ||||||| ||| | || ||||||||||||||||| ||||
Sbjct 579 AAATGGCGAAGAAG-TCGGTGTTAATACAGAGATCTACGCTGCTCACGAGATTGACAGAA 637
Query 705 TTGCTCGTGTTGCCTTCGAGACTGCTCGGAAACGGCGTGGCAAGCTGTGTTCTGTTGACA 764
||||||||||||| |||||||||||| ||||| |||||||||||||||||||||| || |
Sbjct 638 TTGCTCGTGTTGCATTCGAGACTGCTAGGAAAAGGCGTGGCAAGCTGTGTTCTGTCGATA 697
Query 765 AAGCTAATGTTTTGGAAGCCTCAATCTTATGGAGGAAACGAGTAACAGCATTAGCCTCTG 824
|||| ||||| ||||| || ||||| || ||||||||| |||||||||| ||||||||||
Sbjct 698 AAGCCAATGTGTTGGATGCATCAATATTGTGGAGGAAAAGAGTAACAGCTTTAGCCTCTG 757
Query 825 AATATCCTGATGTTGAGCTGTCACATATGTATGTTGACAATGCCGCGATGCAGCTTGTTC 884
||||||| |||||||| || || ||||||||||| || ||||| || ||||||||| | |
Sbjct 758 AATATCCAGATGTTGAACTATCGCATATGTATGTCGATAATGCTGCAATGCAGCTTATCC 817
Query 885 GTGACCCAAAACAGTTTGACACCATCGTCACAAACAACATTTTTGGTGATATATTATCCG 944
|| |||| |||||||||||||| |||||||| || |||||||||||||||||||| || |
Sbjct 818 GTTACCCGAAACAGTTTGACACAATCGTCACCAATAACATTTTTGGTGATATATTGTCTG 877
Query 945 ATGAAGCTTCAATGATCACAGGAAGCATAGGAATGCTGCCATCTGCTAGTCTCAGTGATT 1004
||||||||||||||||||| |||||||| || ||||| |||||||| ||||| |||| |
Sbjct 878 ATGAAGCTTCAATGATCACTGGAAGCATTGGGATGCTTCCATCTGCAAGTCTTGGTGAAT 937
Query 1005 CGGGACCTGGACTCTTTGAACCTATACATGGTTCTGCACCTGATATTGCTGGACAGGATA 1064
|||||||||||||||||||||||||||||||||| ||||| ||||| |||||||| || |
Sbjct 938 CGGGACCTGGACTCTTTGAACCTATACATGGTTCAGCACCAGATATAGCTGGACAAGACA 997
Query 1065 AGGCAAACCCATTGGCAACCATTCTAAGCGCTGCAATGCTTCTGAAATACGGACTTGGAG 1124
|||||||||||||||| |||||||| || || || |||||||| || || ||||||||||
Sbjct 998 AGGCAAACCCATTGGCCACCATTCTCAGTGCGGCGATGCTTCTCAAGTATGGACTTGGAG 1057
Query 1125 AAGAAAAGGCAGCCAAGAGAATTGAAGACGCAGTGTTGGTTGCTCTGAACAACGGATTCA 1184
|||||| ||| || ||||| ||||||||||| || |||| |||||||||||| || ||||
Sbjct 1058 AAGAAACGGCTGCAAAGAGGATTGAAGACGCGGTCTTGGATGCTCTGAACAAAGGTTTCA 1117
Query 1185 GAACTGGAGACATATACTCCGCGGGAACA-AAACTGGTGGGCTGCAAGGAGATGGGAGAG 1243
|||| |||||||| |||||| | |||| | ||||||||||| |||||||| ||||| |||
Sbjct 1118 GAACCGGAGACATCTACTCCCCCGGAA-ATAAACTGGTGGGATGCAAGGAAATGGGTGAG 1176
Query 1244 GAGGTTCTGAAGTCAGTGGACTCCCAAGTTCCAGCTTCTGTTTAA 1288
|||||||| || ||| |||||||| ||||||||||| ||||||||
Sbjct 1177 GAGGTTCTCAAATCACTGGACTCCAAAGTTCCAGCTACTGTTTAA 1221
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54621411330
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5