BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G80570.2
Length=1837
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477187 jgi|Araly1|477187|fgenesh2_kg.2__2317__AT1G80570.3 2189 0.0
> Ahg477187 jgi|Araly1|477187|fgenesh2_kg.2__2317__AT1G80570.3
Length=1558
Score = 2189 bits (1185), Expect = 0.0
Identities = 1343/1421 (95%), Gaps = 4/1421 (0%)
Strand=Plus/Plus
Query 238 GATAGACAAATGGATGAATTGCCAGACCATTTGGTTTGGGACATTCTCAGTAAGCTTCAT 297
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 96 GATAGACAAATGGATGAATTGCCAGATCATTTGGTTTGGGACATTCTCAGTAAGCTTCAT 155
Query 298 ACTACCGATGACAGAAACTCGCTTTCACTCTCATGCAAACGTTTCT-TCTCGCTGGACAA 356
|||||| |||||||||||||| ||||||| ||||||| ||||||| | || || |||||
Sbjct 156 ACTACCAATGACAGAAACTCGGTTTCACTATCATGCAGGCGTTTCTAT-TCCCTAGACAA 214
Query 357 CGAGCAAAGATACTCTCTGCGGATTGGTTGCGGTTTAGTTCCTGCATCCGATGCATTGCT 416
||| |||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||
Sbjct 215 CGACCAAAGATACTCTCTTCGGATCGGTTGCGGTTTAGTTCCTGCAACCGATGCATTGCT 274
Query 417 TTCTCTCTGCAGGAGGTTTCCAAATCTTTCCAAAGTGGAGATTATATACTCAGGCTGGAT 476
||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||
Sbjct 275 TTCTCTCTGCAGGAGGTTTCCAAATCTATCCAAAGTAGAGATTATATACTCAGGTTGGAT 334
Query 477 GTCAAAACTTGGCAAACAAG-TTGACGATCAAGGCCTTCTTGTCCTGACCACAAACTGTC 535
||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||||
Sbjct 335 GTCAAAACTTGGCAAAC-AGCTTGACGATCAAGGCCTTCTTGTCCTCACCACAAACTGTC 393
Query 536 ATTCTCTCACTGATCTCACTCTGAGCTTCTGCACCTTCATCACCGATGTTGGCATAGGCC 595
||||||||| ||||||||||| |||| ||||||||||||||||||||||||||| |||
Sbjct 394 TTTCTCTCACCGATCTCACTCTCAGCTACTGCACCTTCATCACCGATGTTGGCATTCGCC 453
Query 596 ATTTGTCGTCGTGTCCAGAGCTTTCTTCGTTGAAGTTAAATTTCGCTCCCAGGATCACTG 655
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 454 ATTTGTCATCGTGTCTAGAGCTTTCTTCGTTGAAGTTAAATTTCGCTCCCAGGATCACTG 513
Query 656 GTTGTGGTGTGTTGTCACTTGCTGTAGGATGCAAGAAACTCAGGAGACTTCATCTCATTC 715
|||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 514 GTTGTGGTGTCTTGTCACTTGCTGTAGGCTGCAAGAAACTCAGGAGACTTCACCTCATTC 573
Query 716 GATGCCTAAACGTTGCAAGTGTAGAGTGGTTGGAGTATTTCGGAAAGCTTGAGACTTTAG 775
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 574 GATGCCTAAACGTTGCAAGTGTAGAGTGGTTGGAGTATTTCGGAAAGCTTGAAACTTTAG 633
Query 776 AAGAACTCTGTATCAAGAACTGCAGAGCCATTGGGGAAGGTGATTTGATCAAGCTGAGGA 835
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 634 AAGAACTCTGCATCAAGAACTGCAGAGCCATTGGGGAAGGTGATTTGATCAAGCTGAGGA 693
Query 836 ATAGCTGGCGAAAGCTGACAAGTCTGCAGTTTGAGGTAGATGCCAATTACAGGTACATGA 895
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 694 ATAGCTGGCGAAAGCTGACAAGTCTGCAGTTTGAGGTTGATGCCAATTACAGGTACATGA 753
Query 896 AGGTTTACGACCAGTTAGATGTGGAACGGTGGCCCAAACAGTTGGTTCCCTGTGACAGTC 955
||||||| || ||||| ||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 754 AGGTTTATGATCAGTTGGATGTGGAACGGTGGCCGAAACAGTTGGTTCCTTGTGACAGTC 813
Query 956 TGGTGGAGCTCAGCCTCGGTAACTGCATCATAGCTCCTGGTAGAGGGCTCGCTTGTGTGC 1015
|||||||||||||||| |||||||||||||||||||| || ||||||||||||||||| |
Sbjct 814 TGGTGGAGCTCAGCCTTGGTAACTGCATCATAGCTCCCGGGAGAGGGCTCGCTTGTGTAC 873
Query 1016 TGAGAAATTGCAAGAACCTGGAGAAGCTTCATCTGGACATGTGTACCGGTGTCAGCGACT 1075
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 874 TGAGAAATTGCAAGAACCTGGAGAAGCTTCATCTGGATATGTGTACCGGTGTCAGCGACT 933
Query 1076 CAGACATCATAGCATTGGTTCAGAAAGCTAGTCACCTAAGAAGCATCTCGCTCCGTGTCC 1135
|||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 934 CAGACATCATAGCATTGGTTCAGAAAGCTAAACACCTCAGAAGCATCTCGCTCCGTGTCC 993
Query 1136 CGTCCGATTTTACTCTGCCTCTCTTAAACAACATCACGTTAAGATTAACCGATGAAAGCC 1195
| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 994 CATCCGATTTCACTCTGCCTCTCTTAAACAACATCACCCTAAGATTAACCGATGAAAGCC 1053
Query 1196 TCAGCGCCATAGCTCAACACTGCTCAAAGCTCGAATCTTTCAAGATATCTTTCTCAGACG 1255
||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1054 TCAGCGCCATAGCTCGACACTGCTCAAAGCTCGAATCTTTCAAGATCTCTTTCTCAGACG 1113
Query 1256 GTGAATTCCCTTCCCTCTTCTCTTTCACACTCCAGGGGATAATCACTCTGATCCAGAAAT 1315
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 1114 GTGAATTCCCTTCCCTCTTCTCTTTCACCCTCCAGGGGATAATCAATCTGATCCAGAAAT 1173
Query 1316 GCCCAGTACGCGAGCTTTCTCTTGACCATGTGTGTGTATTCAACGACATGGGGATGGAGG 1375
|||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||
Sbjct 1174 GCCCAGTACGCGAGCTTTCTCTTGACCACGTGTGCGTTTTCAACGACATGGGGATGGAGG 1233
Query 1376 CTCTATGTTCAGCTCAGAAACTTGAGATCTTAGAGCTTGTCCATTGCCAAGAAGTGAGCG 1435
|||| |||||||||||||| || |||||||||||||||||||| ||||| |||||||| |
Sbjct 1234 CTCTGTGTTCAGCTCAGAATCTAGAGATCTTAGAGCTTGTCCAATGCCAGGAAGTGAGTG 1293
Query 1436 ATGAGGGGTTGATTCTGGTGAGCCAGTTTCCTTCTCTCAATGTGTTGAAGTTATCAAAAT 1495
|||||||||| ||||| |||||||||||||||||||||| ||||||||| |||||||||
Sbjct 1294 ATGAGGGGTTAATTCTTGTGAGCCAGTTTCCTTCTCTCAGTGTGTTGAAACTATCAAAAT 1353
Query 1496 GTCTGGGAGTGACAGACGATGGAATGAGACCACTTGTTGGATCTCACAAGTTGGAGTTGC 1555
|||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 1354 GTCTGGGAGTCACAGACGATGGAATGAGACCACTTGTTGGATCTCACAAGCTAGAGTTGC 1413
Query 1556 TTGTTGTTGAAGATTGTCCTCAGGTTTCAAGAAGAGGTGTTCATGGTGCTGCAACGTCTG 1615
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1414 TTGTGGTCGAAGATTGTCCTCAGGTTTCAAGAAGAGGTGTTCATGGTGCTGCAACGTCTG 1473
Query 1616 TCTCGTTTAAGCAAGATTTGTCATGGATGTATTGAGATCGT 1656
| || |||||| ||||||||||||||||||| |||||||||
Sbjct 1474 TATCTTTTAAGTAAGATTTGTCATGGATGTACTGAGATCGT 1514
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68981433695
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5