BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G80580.1
Length=771
Score E
Sequences producing significant alignments: (Bits) Value
Ahg316902 jgi|Araly1|316902|fgenesh1_pm.C_scaffold_2001935 874 0.0
> Ahg316902 jgi|Araly1|316902|fgenesh1_pm.C_scaffold_2001935
Length=777
Score = 874 bits (473), Expect = 0.0
Identities = 667/756 (88%), Gaps = 32/756 (4%)
Strand=Plus/Plus
Query 14 ACACCGTTGATGGTCACCGTCTTCAATATTCCGTTCCGTTAAGCTCCATGCATGAAACCA 73
|||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 8 ACACCGTTGATGGTCACCGTCTCCAATATTCCGTTCCTTTAAGCTCCATGCATGAAACCC 67
Query 74 GTCAAAACTCCGAAACTTACGGATTATCCAAAGAGTCGCCGTTGGTCTGCATGCCCTTGT 133
|||||| || |||||||||||| |||||||||||| ||||||| |||||||||||||| |
Sbjct 68 GTCAAAGCTTCGAAACTTACGGGTTATCCAAAGAGACGCCGTTAGTCTGCATGCCCTTCT 127
Query 134 TCGAAACCAACACTACTTCATTCGATATCTCTTCTCTTTTCTCGTT-TAACCCAAAACCA 192
|||||||||||||| ||||||||| ||| |||||||||||||| || |||||||||||||
Sbjct 128 TCGAAACCAACACTTCTTCATTCGGTATTTCTTCTCTTTTCTC-TTCTAACCCAAAACCA 186
Query 193 GAACCCGAAAACACGCATCGTGTCATGGACGATTCCATCGCCGCCGTCGTGGGCGAAAAC 252
|||||||||||||||| | | |||||||||||||||||||||||||| || ||||||||
Sbjct 187 GAACCCGAAAACACGCCTAGGGTCATGGACGATTCCATCGCCGCCGTGGTAGGCGAAAAT 246
Query 253 GTTCTTTTCGGTGATAAAAACAAAGTCTCTGATCACTT----G--ACC-A-A--AGA--A 300
||||||||||||||||| |||||||||||||||||||| | || | | | | |
Sbjct 247 GTTCTTTTCGGTGATAACAACAAAGTCTCTGATCACTTTCCCGCGACGGAGACCACAGGA 306
Query 301 GGTGGTGTGAAGCGGGGGCGGAAGATGCCGCAGAAGACCGGAGGATTCATGGGAGTGAGA 360
|||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||
Sbjct 307 GGTGGTGTGAAGCGGGGGCGCAAGATGCCGCAGAAGAACGGAGGATTTATGGGAGTGAGA 366
Query 361 AAACGGCCGTGGGGGAGATGGTCGGCGGAGATAAGAGACAGGATAGGGCGGTGCAGACAC 420
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 367 AAACGACCTTGGGGGAGATGGTCGGCGGAGATAAGAGACAGGATAGGGCGGTGCAGACAC 426
Query 421 TGGTTAGGAACGTTCGACACGGCGGAAGAGGCAGCGCGTGCGTATGACGCGGCGGCGAGG 480
|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 427 TGGTTAGGAACGTTCGACACGGCGGAGGAGGCGGCGCGTGCGTATGACGCGGCGGCGAGA 486
Query 481 AGGCTTAGAGGGACCAAAGCCAAGACCAATTTCGTGATTCCTCCGCTTTTTCCCA-AGGA 539
|||||||||||||| |||||||||||||| ||||||||||||||| |||| ||| ||||
Sbjct 487 AGGCTTAGAGGGACGAAAGCCAAGACCAACTTCGTGATTCCTCCGGTTTT-CCCGGAGGA 545
Query 540 AATAGCTCAGGCTCAGGAGGATA-ATA-GGATGAGGCagaagcagaagaagaag-aagaa 596
|||||||| || |||| | || | | ||| || |||| || || || || |||||
Sbjct 546 AATAGCTCTGGTTCAGTCGTCTACA-ACGGA--AG--AGAAT-AGGAGGAGGAGGAAGAA 599
Query 597 gaaaaaagT-GAGTGTGAGGAAGTGTGTTAAAGTCACATCGGTTGCACAGTTGTTC-GAT 654
||||| || || |||||||||||||||||||||||||||||||||||| |||||| | |
Sbjct 600 GAAAAG-GTTGAATGTGAGGAAGTGTGTTAAAGTCACATCGGTTGCACAATTGTTCAG-T 657
Query 655 GATGCCAATTTTATAAA-TTCTTCTAGTATTAAAGGAAATGTGATTAGTTCTATTGATAA 713
|| ||||| | || ||||||||||| ||| | ||||||| ||| ||||||||||||
Sbjct 658 AATACCAATACC-TCAAGTTCTTCTAGTAGTAATGTAAATGTGGTTACTTCTATTGATAA 716
Query 714 TCTTGAAAAAATGGGTCTAGAGCTTGATTTGA-GTT 748
|||||||||||||||||||||||||||||||| |||
Sbjct 717 TCTTGAAAAAATGGGTCTAGAGCTTGATTTGAAGTT 752
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28439696082
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5