BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G80600.1
Length=1590
Score E
Sequences producing significant alignments: (Bits) Value
Ahg909652 jgi|Araly1|909652|Al_scaffold_0002_2733 2213 0.0
> Ahg909652 jgi|Araly1|909652|Al_scaffold_0002_2733
Length=1377
Score = 2213 bits (1198), Expect = 0.0
Identities = 1319/1378 (96%), Gaps = 5/1378 (0%)
Strand=Plus/Plus
Query 41 ATGGCGTCTCTTAGCCAAATCACCCTGCCACGCGCGCCGTCGTCGGAGATTGGCCTCTTA 100
|||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 1 ATGGCGTCTCTTGGCCAAATCACCCTGCCACGCGCGCCGTCGTCTGAGATTGGCGTCTTT 60
Query 101 CGCCGTCGATTGGAGCGGCCGATCATCAGAACCCGGATCGGATTCAACGGCCGGATTGCG 160
||||||||||| || || |||||||||||||||||||||||||||| ||||||||| |||
Sbjct 61 CGCCGTCGATTTGAACGACCGATCATCAGAACCCGGATCGGATTCAGCGGCCGGATAGCG 120
Query 161 AGCGTATTGACTAACGCAGGGGACCAAGCGGTGTCGGTAAAAGCGAGTGTGAGCCAGAAG 220
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 121 AGCGTATTGACAAACGCAGGGGAACAAGCGGTGTCGGTAAAAGCGAGTGTGAGCCAGAAG 180
Query 221 GTGATTGAAGAGGAAGCCAAAGTTATTGTGGGTACCTACGCGCGAGCTCCAGTGGTTCTC 280
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||
Sbjct 181 GTGATTGAAGAGGAAGCTAAAGTTATTGTGGGTACCTACGCGCGAGCGCCAGTGGTGCTT 240
Query 281 TCGAGTGGGAAAGGTTGTAAATTGTTCGACCCTGAAGGAAAAGAGTATCTGGATTGTGCA 340
|| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 241 TCAAGTGGGAAAGGTTGTAAATTGTTCGACCCAGAAGGGAAAGAGTATCTGGATTGTGCA 300
Query 341 TCTGGAATCGCTGTGAATGCTCTTGGTCATGGAGATCCTGATTGGCTTCGAGCTGTCACT 400
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 301 TCTGGAATTGCTGTGAATGCTCTTGGCCATGGAGATCCTGATTGGCTTCGAGCTGTCACT 360
Query 401 GAGCAAGCTGGTGTTCTTGCCCATGTCAGCAATGTTTATTACACGATCCCT---CAGATA 457
|| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 361 GACCAAGCTGGTGTTCTTGCCCATGTCAGCAATGTCTATTACACGATCCCTCAGCAGATA 420
Query 458 GAGCTCGCAAAACGCTTGGTGGCGAGTTCTTTTGCAGACCGTGTATTCTTTTGTAACTCG 517
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 421 GAGCTCGCAAAACGCTTGGTGGCAAGTTCTTTTGCAGACCGTGTATTCTTTTGTAACTCT 480
Query 518 GGAACGGAAGCCAATGAAGCAGCCATTAAGTTTTCAAGAAAATTCCAGAGATTCACCCAT 577
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 481 GGAACGGAAGCCAATGAAGCAGCCATCAAGTTTTCAAGAAAGTTCCAGAGATTCACCCAT 540
Query 578 CCAGAAGACAAAGAAGTCGCGACAGGTTTCATCGCCTTTACAAACAGCTTCCATGGAAGA 637
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CTAGAAGACAAAGAAGTCGCGACAGGTTTCATCGCCTTTACAAACAGCTTCCATGGAAGA 600
Query 638 ACCTTAGGAGCTCTTGCCTTGACAAGCAAAGAACAATACAGAACTCCTTTCGAACCCATC 697
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 ACCTTAGGAGCTCTTGCTTTGACAAGCAAAGAACAATACAGAACTCCTTTCGAACCCATC 660
Query 698 ATGCCTGGTGTAACCTTCTTAGAATATGGTAACATTCAAGCAGCCACAGACCTTATCCGC 757
||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 661 ATGCCAGGTGTAACATTCTTAGAATATGGTAACATTCAAGCCGCCACAGACCTTATCCGC 720
Query 758 TCAGGTAAAATAGCTGCAGTTTTTGTGGAACCAATTCAAGGAGAAGGCGGGATTTACTCT 817
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TCAGGTAAAATAGCTGCAGTTTTTGTGGAACCAATTCAAGGAGAAGGCGGGATTTACTCT 780
Query 818 GCTACAAAAGAGTTTCTGCAATCTCTGCGCTCTGCTTGTGATGCCGCTGGATCTCTTCTC 877
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GCTACAAAAGAGTTTCTGCAATCTCTGCGCTCTGCTTGTGATGCCGCTGGATCTCTTCTC 840
Query 878 GTCTTCGATGAGGTTCAATGTGGTTTGGGTCGAACGGGTCTCATGTGGGCTTATGAAGCC 937
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 GTCTTCGATGAGGTTCAATGTGGTTTGGGTCGAACGGGTCTCATGTGGGCTTATGAAGCC 900
Query 938 TTCGGTGTGACTCCTGACATAATGACGGTTGCAAAGCCTTTAGCTGGTGGTTTACCTATT 997
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 TTCTGTGTAACTCCTGACATAATGACGGTTGCAAAGCCTTTAGCTGGTGGTTTACCTATT 960
Query 998 GGAGCGGTGCTGGTGACTGAAAAGGTTGCAGAGACCATAAACTACGGAGATCATGGAAGT 1057
||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 961 GGAGCGGTGCTCGTGACTGAAAAGGTTGCAGAGACCATAAAATACGGAGATCACGGAAGT 1020
Query 1058 ACATTTGCAGGCAGCCCTCTTGTGTGCAGTGCAGCCATTGCAGTTATGGATAAAGTATCG 1117
||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1021 ACATTTGCAGGCAACCCTCTTGTGTGCAGTGCAGCCATTGCAGTCATTGATAAAGTATCG 1080
Query 1118 AAACCCTCTTTCTTGTCCAGTGTCTCAAATAAAGGTCGATACTTTAGAGACCTGTTGGTG 1177
|| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1081 AAGCCCTCTTTCTTGTCCAGTGTCTCAATTAAAGGTCGATACTTTAGAGACCTGTTGGTT 1140
Query 1178 AAAAAACTTGGAGGAAACTCGCACGTGAAGGAAGTGAGAGGCGAAGGGCTTATCATAGGA 1237
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 AAAAAACTTGGTGGAAACTCGCACGTGAAGGAAGTGAGAGGCGAAGGGCTTATCATAGGA 1200
Query 1238 GTGGAGCTCGATGTGCCGGCAAGCTCACTGGTTGATGCTTGCCGAGATTCGGGTCTTCTG 1297
||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1201 GTGGAACTCGATGTGCCGGCAAATTCACTGGTCGATGCTTGCCGAGATTCGGGTCTTCTG 1260
Query 1298 ATCTTGACAGCGGGGAAAGGAAATGTCGTCAGGATTGTTCCTCCGTTGGTTATATCAGAG 1357
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 ATTTTGACAGCAGGGAAAGGAAATGTCGTCAGGATTGTTCCTCCGTTGGTTATATCAGAG 1320
Query 1358 GAGGAAATCGAACGTGCGGTTGAGATCATGTCTC-AAAATTTGACTGCGCTTGATTGA 1414
|||||||||||||||||||||||||| |||| || ||||||| | || |||||| |||
Sbjct 1321 GAGGAAATCGAACGTGCGGTTGAGATAATGT-TCCAAAATTTAATTGTGCTTGACTGA 1377
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59573143180
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5