BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G80610.1
Length=1180
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477185 jgi|Araly1|477185|fgenesh2_kg.2__2315__AT1G80610.1 1543 0.0
> Ahg477185 jgi|Araly1|477185|fgenesh2_kg.2__2315__AT1G80610.1
Length=1087
Score = 1543 bits (835), Expect = 0.0
Identities = 1030/1118 (92%), Gaps = 37/1118 (3%)
Strand=Plus/Plus
Query 62 TGAGTTGCGACTATGTCCGGCGAAAACTGGATTCGAGTGGCCATGTCTGACGATTCCATG 121
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 4 TGAGTTCCGACTATGTCCGGTGAAAACTGGATTCGAGTGGCCATGTCTGACGATTCCTTG 63
Query 122 GTGGCGGAGGCGCTTCTTCGGCTCCGCCACTCCGAACCGAAGAATAGAGTCGACGCGTCC 181
|||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||
Sbjct 64 GTGGCGGAGGCGCTTCTTCGGCTCCGCCACTCCGAACCAAAGAAGAGCGTCGACGCGTCT 123
Query 182 CCTCTCAAGCTGAAATGGAGCGTGCGTCAACGGAGATCGAAGAAAGGAGACCAGACGCGA 241
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 124 CCTCTCAAGCTGAAATGGAGCGTCCGTCAACGGAGATCGAAGAAAGGAGACCAGACGCGA 183
Query 242 GCAAGCCCCACCACACCGCTTTCCTGGAGCGGTGCCACGTCTCTTAGCGGCGGAGGCGGC 301
|| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 184 GCCAGCCCCACCACACCGCTTTCCTGGAGCGGTACCACGTCTCTTAGCGGCGGAGGCGGC 243
Query 302 AGCGGTGGAAGCGGCGCCGGTGCTACCACCATGGAAGGCCTCGAGGAGTCTAGCGCCGCC 361
|||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 244 AGCGGTGGAAGCGGCGGCGGTGCTACCACCGTGGAAGGCCTTGAGGAGTCTAGCGCCGCC 303
Query 362 GTAAAACCCTCTGAGCCATTTAGATCTAAGATTTCTCAAACGAGTGCAATaacaacaaca 421
|||||||||| |||||| |||||||||||||||||||||||||||||||| |
Sbjct 304 GTAAAACCCTTTGAGCCCTTTAGATCTAAGATTTCTCAAACGAGTGCAAT---------A 354
Query 422 acaacaacaacCCTTTTCAAGAGATCAAGAAAGAAGAAGACTTTGGCTGAGCTTAAAGAG 481
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 355 ACAACAACAACCCTTTTCAAGAGATCAAGAAAGAAAAAGACTTTGGCTGAGCTTAAAGAA 414
Query 482 GAAGAGATCATGCTCTTGAAGGAAAGTAACGGCCTGAAAAATGAATTGGCAAATATGCGC 541
||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||
Sbjct 415 GAAGAGATCATGCTCTTGAAGGAGAGTAGCGGCCTGAAAAATGAATTGGCAAGTATGCGC 474
Query 542 GATTTGCTCGAGCAACAAAGAGCAAGAAACACTGCTCTAAAGAAGATGAAGGCTGAATCA 601
|||||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 475 GATTTGGTCGAGCAACAAAGAGCAAGAAACAATGCTCTTAAGAAGATGAAGGCTGAATCA 534
Query 602 CAATCTGCCTTATCGTGCAAACTCACTTTCGAACAAGGTTCTTCCTTCTTGCTCCCTGAC 661
||||||||||||| ||||||| | |||||||| ||||||| ||||||||||||||||||
Sbjct 535 AAATCTGCCTTATCTTGCAAACACGCTTTCGAAAAAGGTTCCTCCTTCTTGCTCCCTGAC 594
Query 662 CTAAACATGCCTCTAGATAACGACCCGAGCCCTGAAGTTGTCTGCTGAACGGGCGAGCCA 721
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 595 CTAAACATGCCTCTAGATAACGACCCGAGCCCTGAAGTTGTCTGCTGAAGGGGGGAGCCA 654
Query 722 CAAGCATATCATTCTTTTGTTTTTCCCATTACACAACACTATACCACTATACCTCCTCCG 781
||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 655 TAAGCACATCATTCTTTTGTTTTTCCCATTACACAAC--TATACCACTATACCTACTCC- 711
Query 782 TCCACAAACATGTTTTTTGAACTGTAACTATATGAATATGAAGAACGTAGATTAATCCTA 841
| |||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 712 -C-ACAAACATGTCTTTT-AACTGTAACTATATGAACATGAAGAACGTAGATTAATCCTA 768
Query 842 TATATCCTTCACCCATATCCCGGTGGAAGCTGAAGAAGATTCGCCTGAAGGTGAAGTGGT 901
|||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||| |
Sbjct 769 TATATCCTTCACCCATTTCCCG-TGGACGCTGAAGAAGATTCGCCTGAAGGTGAAGT--T 825
Query 902 TCGAGACTATGGTTAAGTGTGTTA--ACAATATCTTCTAGTTTAGCTGGTAGTAAGATTT 959
| | | |||||||||| || ||| |||||||| |||||||||||||||||||||
Sbjct 826 T--A---T--GGTTAAGTGTTTTCTGACA-TATCTTCTTGTTTAGCTGGTAGTAAGATTT 877
Query 960 TTGTTCTGCCAATCTCCTAAATGATTCTTATCTTTCTCCCATTTTATTAGGATGAGATGT 1019
||| ||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 878 TTGCTCTGCCATTCTCCTAAATGATTCTTATGTTTCTCCCATTTTCTTAGGATGAGATGT 937
Query 1020 AATTATCTACTTAGATAATAGATGTACACCtttttttttttGTTTGTTCTTTCTTATTAT 1079
||||||||||||||||||||||||||||| |||||||||| ||| ||| ||||||||
Sbjct 938 AATTATCTACTTAGATAATAGATGTACAC-TTTTTTTTTT-GTTC-TTC---CTTATTAT 991
Query 1080 CTCTGGTAAGATGTATTACATCGACATTTATAATCAGTGTAACACGTTCCAAA-CATTTT 1138
|||| |||||||||||||| |||||||||||||||| |||||||||||||||| ||||||
Sbjct 992 CTCTAGTAAGATGTATTACGTCGACATTTATAATCAATGTAACACGTTCCAAAACATTTT 1051
Query 1139 ACTATATTTTGTATTATGATTGATGGACTAAAAAATAT 1176
||||| ||| ||| |||||||||||||||| |||||||
Sbjct 1052 ACTAT-TTT-GTAATATGATTGATGGACTATAAAATAT 1087
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44031969135
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5