BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G80620.1 Length=1522 Score E Sequences producing significant alignments: (Bits) Value Ahg316898 jgi|Araly1|316898|fgenesh1_pm.C_scaffold_2001931 730 0.0 Ahg333433 jgi|Araly1|333433|fgenesh1_pm.C_scaffold_1040000001 529 3e-149 Ahg951675 jgi|Araly1|951675|scaffold_104000002.1 161 1e-38 > Ahg316898 jgi|Araly1|316898|fgenesh1_pm.C_scaffold_2001931 Length=1242 Score = 730 bits (395), Expect = 0.0 Identities = 717/861 (83%), Gaps = 67/861 (8%) Strand=Plus/Plus Query 43 ATGGCGCTTCATCTCGCCAGACCAAAACAAAGGTTACATTCGAATCCATCTCTCATTCAC 102 ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| Sbjct 1 ATGGCGCTTCATCTCGCCAGACCTAAACAAAGGTTACATTCTAATCCATCTCTCATTCAT 60 Query 103 CTTTTCTCAAcctcctcctcctcctcctc-A-TCATC-AC--CTCAAGACG-GGAACGAA 156 ||||||||||||||||| || | |||||| | | | || || || || | | | Sbjct 61 CTTTTCTCAACCTCCTCATCAT-CTCCTCAAGACGGCAACGAATCTAG-CGAGCAGC-CC 117 Query 157 TCT-AATGAACAGCCCTC-TCA--ATCATCGTCG---GATTATAAAATCTCTTCCTACTT 209 ||| ||| || | | || ||| |||||| || |||| |||||| ||||||||||| Sbjct 118 TCTCAAT-CACCGTCTTCTTCATCTTCATCGCCGCCAGATTTTAAAATATCTTCCTACTT 176 Query 210 CAGTGGTATCAGAAGCAGTCTCAAACAGACTCAGTCTCAGGACGGGAAGAGACAGTTCGT 269 |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| Sbjct 177 CAGTGGTATCAGAAGCAGTCTCAAACAGACTCAGCCTCAGGACGGGAGGAGACAGTTCGT 236 Query 270 CAGATTCGATGCCAAACCTCAGAAT---------TCGCTTTCCGGTAACCAGGATATCAG 320 |||||||||||| ||| ||| |||| ||||| |||||||| ||||||||||| Sbjct 237 CAGATTCGATGCTAAAGCTCCGAATCCGGCGACGTCGCTCTCCGGTAATCAGGATATCAG 296 Query 321 GAGGAATCTGAACGAGTTCCGAAGTAGAGCAACAGCTCCGCCGCCGAGGGATAT-GCAGG 379 ||| ||||||||||||||||||||||||||| ||||||||||||||||||| | ||||| Sbjct 297 GAGAAATCTGAACGAGTTCCGAAGTAGAGCAGTAGCTCCGCCGCCGAGGGAT-TGGCAGG 355 Query 380 ATCTTTTCAAGCAGAATGTGTTATCAAAATCTGGAGGGACTCGTA---GAATCG-AAGGT 435 || | | ||| |||||||| ||| ||||||| || | || ||||| || ||| || Sbjct 356 ATATATACAAACAGAATGTATTACCAAAATC-GG-GAGATTCGTATGGGACTCGTAA--A 411 Query 436 GTGCCAT-TAACAAACATAAAGGCGAACTTAAGGCAGATGAGACCACAACAAGC-AACCA 493 | | || ||||||||||| || ||||||||||||||||||| | |||||| || || Sbjct 412 AT-CGATGGAACAAACATAACGGAGAACTTAAGGCAGATGAGA--TC-ACAAGCTAA-CA 466 Query 494 CTGAGAGCAAATGGGCCAATTTATCTGGGATT-CAGAACATTATGAAGACG-A----ACA 547 | ||||||||||||||||||||||||||| || ||||||| |||||||||| | | | Sbjct 467 CAGAGAGCAAATGGGCCAATTTATCTGGG-TTACAGAACACTATGAAGACGAATTTGAAA 525 Query 548 -TCAATGATAATATCCGTTCAAATGTAATCGGAGGAGCAGCAGAAGGATTGCCACATTCA 606 ||||||| ||| |||| ||||||||||||||||||| | ||||||||||||| ||||| Sbjct 526 TTCAATGAAAATCTCCGGTCAAATGTAATCGGAGGAG--G-AGAAGGATTGCCATATTCA 582 Query 607 GTGGTTGGGAAGGAGTTAGAAGAA--GAAGATG--TG-ACA-GAG---GAGGAGATGAAA 657 ||| ||| |||||| |||||| || | ||| | || | | ||| |||||||||||| Sbjct 583 GTGTTTGAGAAGGAATTAGAACAAGGGCAGAAGAATGAAAATGAGACAGAGGAGATGAAA 642 Query 658 TCAGAGTTTATCAAGAGCTATGATCCAATAGAACTGGGAGAGAAACTAAGATTGTATAGG 717 ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| Sbjct 643 TCAGAGTTTATCAAGAGTTATGATCCAATAGAATTGGGAGAGAAACTAAGATTGTATAGA 702 Query 718 CCTGAGGGAAAGAAAGAAGAAGGTTGGTTCTCATTACAGGAGCTCAATCAGAGGCTTGTT 777 || ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| Sbjct 703 CCAGAGGGAAAGAAAGAACTAGGTTGGTTCTCATTACATGAGCTCAATCAGAGGCTTGTT 762 Query 778 AAGCTCAGGGCCATGGAAGAGGAACAATTCCAGAAAACGAGTATAGT-GCATCCCTCCTT 836 |||||||||||||||||||||||||||||| ||| |||||| | | | | |||||||||| Sbjct 763 AAGCTCAGGGCCATGGAAGAGGAACAATTCGAGAGAACGAGGACA-TCGAATCCCTCCTT 821 Query 837 CGTCAAC-AACTTGAGGTCTG 856 ||| | || |||||||||| Sbjct 822 CGTTGAGGAA-TTGAGGTCTG 841 Score = 601 bits (325), Expect = 6e-171 Identities = 341/349 (98%), Gaps = 0/349 (0%) Strand=Plus/Plus Query 937 AAGTATATGCTCGAGCCTCCAAAAGATCAACTAGTTGAAACTTATTTCCATCCGGATAAC 996 |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| Sbjct 892 AAGTATATGCTCGAGCCTCCGAAAGATCAACTAGTTGAAACTTATTTCCACCCGGATAAC 951 Query 997 ATGTCATCTGCGGAGAAGATGAAAATCGAGCTTGCAAAGGTCAGAGAAGAGTTCAAGATG 1056 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 952 ATGTCATCTGCGGAGAAGATGAAAATCGAGCTTGCAAAGGTCAGAGAAGAGTTCAAGATG 1011 Query 1057 TCAGAATCGGATTGTGGTTCTGCACGTGTTCAAGTGGCGCAACTGACCACTAAGATCAAG 1116 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1012 TCAGAATCGGATTGTGGTTCTGCACGTGTTCAAGTGGCACAACTGACCACTAAGATCAAG 1071 Query 1117 CATCTATCCTCGGTTCTACATAAAAAGGACAAGCATTCGCGGAAAGGACTTATAGCAATG 1176 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1072 CATCTATCCTCGGTTCTACACAAAAAGGACAAGCATTCGCGGAAAGGACTTATAGCAATG 1131 Query 1177 GTGCAGAGACGGAAGAAGCTGTTGAAGTATATGAGAAGAACGGACTGGGATTCTTACTGC 1236 ||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||| Sbjct 1132 GTGCAGAGACGGAAGAAACTGTTGAAGTATATGAGACGAACGGATTGGGATTCTTACTGC 1191 Query 1237 CTTTCACTGTCAAAACTCGGCCTTCGTGACAACCCGGATTACAAGTTTT 1285 ||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1192 CTTTCACTGTCAAAACTCGGCCTTCGTGACAACCCAGATTACAAGTTTT 1240 > Ahg333433 jgi|Araly1|333433|fgenesh1_pm.C_scaffold_1040000001 Length=315 Score = 529 bits (286), Expect = 3e-149 Identities = 300/307 (98%), Gaps = 0/307 (0%) Strand=Plus/Plus Query 979 TATTTCCATCCGGATAACATGTCATCTGCGGAGAAGATGAAAATCGAGCTTGCAAAGGTC 1038 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7 TATTTCCACCCGGATAACATGTCATCTGCGGAGAAGATGAAAATCGAGCTTGCAAAGGTC 66 Query 1039 AGAGAAGAGTTCAAGATGTCAGAATCGGATTGTGGTTCTGCACGTGTTCAAGTGGCGCAA 1098 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 67 AGAGAAGAGTTCAAGATGTCAGAATCGGATTGTGGTTCTGCACGTGTTCAAGTGGCACAA 126 Query 1099 CTGACCACTAAGATCAAGCATCTATCCTCGGTTCTACATAAAAAGGACAAGCATTCGCGG 1158 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 127 CTGACCACTAAGATCAAGCATCTATCCTCGGTTCTACACAAAAAGGACAAGCATTCGCGG 186 Query 1159 AAAGGACTTATAGCAATGGTGCAGAGACGGAAGAAGCTGTTGAAGTATATGAGAAGAACG 1218 ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| Sbjct 187 AAAGGACTTATAGCAATGGTGCAGAGACGGAAGAAACTGTTGAAGTATATGAGACGAACG 246 Query 1219 GACTGGGATTCTTACTGCCTTTCACTGTCAAAACTCGGCCTTCGTGACAACCCGGATTAC 1278 |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| Sbjct 247 GACTGGGATTCTTACTGCCTTTCACTGTCAAAACTCGGCCTTCGCGACAACCCAGATTAC 306 Query 1279 AAGTTTT 1285 ||||||| Sbjct 307 AAGTTTT 313 > Ahg951675 jgi|Araly1|951675|scaffold_104000002.1 Length=190 Score = 161 bits (87), Expect = 1e-38 Identities = 140/163 (86%), Gaps = 14/163 (9%) Strand=Plus/Plus Query 25 CCGCCAAGA--TCAGTTTCCATGGCGCTTCATCTCGCCAGACCAAAACAAAGGTTACATT 82 ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1 CCGCCAAGATCTCAGTTTCCATGGCGCTTCATCTCGCCAGACCTAAACAAAGGTTACATT 60 Query 83 CGAATCCATCTCTCATTCACCTTTTCTCAAcctcctcctcctcctcctcATCATCACCTC 142 | ||||||||||||||||| ||||||||||||||||| || ||| || | || Sbjct 61 CTAATCCATCTCTCATTCATCTTTTCTCAACCTCCTCATC---------ATC-TC-C-TC 108 Query 143 AAGACGGGAACGAATCTAATGAACAGCCCTCTCAATCATCGTC 185 ||||||| |||||||||| || ||||||||||||||| |||| Sbjct 109 AAGACGGCAACGAATCTAGCGAGCAGCCCTCTCAATCACCGTC 151 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56983006520 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5