BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G80620.1
Length=1522
Score E
Sequences producing significant alignments: (Bits) Value
Ahg316898 jgi|Araly1|316898|fgenesh1_pm.C_scaffold_2001931 730 0.0
Ahg333433 jgi|Araly1|333433|fgenesh1_pm.C_scaffold_1040000001 529 3e-149
Ahg951675 jgi|Araly1|951675|scaffold_104000002.1 161 1e-38
> Ahg316898 jgi|Araly1|316898|fgenesh1_pm.C_scaffold_2001931
Length=1242
Score = 730 bits (395), Expect = 0.0
Identities = 717/861 (83%), Gaps = 67/861 (8%)
Strand=Plus/Plus
Query 43 ATGGCGCTTCATCTCGCCAGACCAAAACAAAGGTTACATTCGAATCCATCTCTCATTCAC 102
||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1 ATGGCGCTTCATCTCGCCAGACCTAAACAAAGGTTACATTCTAATCCATCTCTCATTCAT 60
Query 103 CTTTTCTCAAcctcctcctcctcctcctc-A-TCATC-AC--CTCAAGACG-GGAACGAA 156
||||||||||||||||| || | |||||| | | | || || || || | | |
Sbjct 61 CTTTTCTCAACCTCCTCATCAT-CTCCTCAAGACGGCAACGAATCTAG-CGAGCAGC-CC 117
Query 157 TCT-AATGAACAGCCCTC-TCA--ATCATCGTCG---GATTATAAAATCTCTTCCTACTT 209
||| ||| || | | || ||| |||||| || |||| |||||| |||||||||||
Sbjct 118 TCTCAAT-CACCGTCTTCTTCATCTTCATCGCCGCCAGATTTTAAAATATCTTCCTACTT 176
Query 210 CAGTGGTATCAGAAGCAGTCTCAAACAGACTCAGTCTCAGGACGGGAAGAGACAGTTCGT 269
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 177 CAGTGGTATCAGAAGCAGTCTCAAACAGACTCAGCCTCAGGACGGGAGGAGACAGTTCGT 236
Query 270 CAGATTCGATGCCAAACCTCAGAAT---------TCGCTTTCCGGTAACCAGGATATCAG 320
|||||||||||| ||| ||| |||| ||||| |||||||| |||||||||||
Sbjct 237 CAGATTCGATGCTAAAGCTCCGAATCCGGCGACGTCGCTCTCCGGTAATCAGGATATCAG 296
Query 321 GAGGAATCTGAACGAGTTCCGAAGTAGAGCAACAGCTCCGCCGCCGAGGGATAT-GCAGG 379
||| ||||||||||||||||||||||||||| ||||||||||||||||||| | |||||
Sbjct 297 GAGAAATCTGAACGAGTTCCGAAGTAGAGCAGTAGCTCCGCCGCCGAGGGAT-TGGCAGG 355
Query 380 ATCTTTTCAAGCAGAATGTGTTATCAAAATCTGGAGGGACTCGTA---GAATCG-AAGGT 435
|| | | ||| |||||||| ||| ||||||| || | || ||||| || ||| ||
Sbjct 356 ATATATACAAACAGAATGTATTACCAAAATC-GG-GAGATTCGTATGGGACTCGTAA--A 411
Query 436 GTGCCAT-TAACAAACATAAAGGCGAACTTAAGGCAGATGAGACCACAACAAGC-AACCA 493
| | || ||||||||||| || ||||||||||||||||||| | |||||| || ||
Sbjct 412 AT-CGATGGAACAAACATAACGGAGAACTTAAGGCAGATGAGA--TC-ACAAGCTAA-CA 466
Query 494 CTGAGAGCAAATGGGCCAATTTATCTGGGATT-CAGAACATTATGAAGACG-A----ACA 547
| ||||||||||||||||||||||||||| || ||||||| |||||||||| | | |
Sbjct 467 CAGAGAGCAAATGGGCCAATTTATCTGGG-TTACAGAACACTATGAAGACGAATTTGAAA 525
Query 548 -TCAATGATAATATCCGTTCAAATGTAATCGGAGGAGCAGCAGAAGGATTGCCACATTCA 606
||||||| ||| |||| ||||||||||||||||||| | ||||||||||||| |||||
Sbjct 526 TTCAATGAAAATCTCCGGTCAAATGTAATCGGAGGAG--G-AGAAGGATTGCCATATTCA 582
Query 607 GTGGTTGGGAAGGAGTTAGAAGAA--GAAGATG--TG-ACA-GAG---GAGGAGATGAAA 657
||| ||| |||||| |||||| || | ||| | || | | ||| ||||||||||||
Sbjct 583 GTGTTTGAGAAGGAATTAGAACAAGGGCAGAAGAATGAAAATGAGACAGAGGAGATGAAA 642
Query 658 TCAGAGTTTATCAAGAGCTATGATCCAATAGAACTGGGAGAGAAACTAAGATTGTATAGG 717
||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 643 TCAGAGTTTATCAAGAGTTATGATCCAATAGAATTGGGAGAGAAACTAAGATTGTATAGA 702
Query 718 CCTGAGGGAAAGAAAGAAGAAGGTTGGTTCTCATTACAGGAGCTCAATCAGAGGCTTGTT 777
|| ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 703 CCAGAGGGAAAGAAAGAACTAGGTTGGTTCTCATTACATGAGCTCAATCAGAGGCTTGTT 762
Query 778 AAGCTCAGGGCCATGGAAGAGGAACAATTCCAGAAAACGAGTATAGT-GCATCCCTCCTT 836
|||||||||||||||||||||||||||||| ||| |||||| | | | | ||||||||||
Sbjct 763 AAGCTCAGGGCCATGGAAGAGGAACAATTCGAGAGAACGAGGACA-TCGAATCCCTCCTT 821
Query 837 CGTCAAC-AACTTGAGGTCTG 856
||| | || ||||||||||
Sbjct 822 CGTTGAGGAA-TTGAGGTCTG 841
Score = 601 bits (325), Expect = 6e-171
Identities = 341/349 (98%), Gaps = 0/349 (0%)
Strand=Plus/Plus
Query 937 AAGTATATGCTCGAGCCTCCAAAAGATCAACTAGTTGAAACTTATTTCCATCCGGATAAC 996
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 892 AAGTATATGCTCGAGCCTCCGAAAGATCAACTAGTTGAAACTTATTTCCACCCGGATAAC 951
Query 997 ATGTCATCTGCGGAGAAGATGAAAATCGAGCTTGCAAAGGTCAGAGAAGAGTTCAAGATG 1056
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 952 ATGTCATCTGCGGAGAAGATGAAAATCGAGCTTGCAAAGGTCAGAGAAGAGTTCAAGATG 1011
Query 1057 TCAGAATCGGATTGTGGTTCTGCACGTGTTCAAGTGGCGCAACTGACCACTAAGATCAAG 1116
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1012 TCAGAATCGGATTGTGGTTCTGCACGTGTTCAAGTGGCACAACTGACCACTAAGATCAAG 1071
Query 1117 CATCTATCCTCGGTTCTACATAAAAAGGACAAGCATTCGCGGAAAGGACTTATAGCAATG 1176
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1072 CATCTATCCTCGGTTCTACACAAAAAGGACAAGCATTCGCGGAAAGGACTTATAGCAATG 1131
Query 1177 GTGCAGAGACGGAAGAAGCTGTTGAAGTATATGAGAAGAACGGACTGGGATTCTTACTGC 1236
||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||
Sbjct 1132 GTGCAGAGACGGAAGAAACTGTTGAAGTATATGAGACGAACGGATTGGGATTCTTACTGC 1191
Query 1237 CTTTCACTGTCAAAACTCGGCCTTCGTGACAACCCGGATTACAAGTTTT 1285
||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1192 CTTTCACTGTCAAAACTCGGCCTTCGTGACAACCCAGATTACAAGTTTT 1240
> Ahg333433 jgi|Araly1|333433|fgenesh1_pm.C_scaffold_1040000001
Length=315
Score = 529 bits (286), Expect = 3e-149
Identities = 300/307 (98%), Gaps = 0/307 (0%)
Strand=Plus/Plus
Query 979 TATTTCCATCCGGATAACATGTCATCTGCGGAGAAGATGAAAATCGAGCTTGCAAAGGTC 1038
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 7 TATTTCCACCCGGATAACATGTCATCTGCGGAGAAGATGAAAATCGAGCTTGCAAAGGTC 66
Query 1039 AGAGAAGAGTTCAAGATGTCAGAATCGGATTGTGGTTCTGCACGTGTTCAAGTGGCGCAA 1098
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 67 AGAGAAGAGTTCAAGATGTCAGAATCGGATTGTGGTTCTGCACGTGTTCAAGTGGCACAA 126
Query 1099 CTGACCACTAAGATCAAGCATCTATCCTCGGTTCTACATAAAAAGGACAAGCATTCGCGG 1158
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 127 CTGACCACTAAGATCAAGCATCTATCCTCGGTTCTACACAAAAAGGACAAGCATTCGCGG 186
Query 1159 AAAGGACTTATAGCAATGGTGCAGAGACGGAAGAAGCTGTTGAAGTATATGAGAAGAACG 1218
||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 187 AAAGGACTTATAGCAATGGTGCAGAGACGGAAGAAACTGTTGAAGTATATGAGACGAACG 246
Query 1219 GACTGGGATTCTTACTGCCTTTCACTGTCAAAACTCGGCCTTCGTGACAACCCGGATTAC 1278
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 247 GACTGGGATTCTTACTGCCTTTCACTGTCAAAACTCGGCCTTCGCGACAACCCAGATTAC 306
Query 1279 AAGTTTT 1285
|||||||
Sbjct 307 AAGTTTT 313
> Ahg951675 jgi|Araly1|951675|scaffold_104000002.1
Length=190
Score = 161 bits (87), Expect = 1e-38
Identities = 140/163 (86%), Gaps = 14/163 (9%)
Strand=Plus/Plus
Query 25 CCGCCAAGA--TCAGTTTCCATGGCGCTTCATCTCGCCAGACCAAAACAAAGGTTACATT 82
||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1 CCGCCAAGATCTCAGTTTCCATGGCGCTTCATCTCGCCAGACCTAAACAAAGGTTACATT 60
Query 83 CGAATCCATCTCTCATTCACCTTTTCTCAAcctcctcctcctcctcctcATCATCACCTC 142
| ||||||||||||||||| ||||||||||||||||| || ||| || | ||
Sbjct 61 CTAATCCATCTCTCATTCATCTTTTCTCAACCTCCTCATC---------ATC-TC-C-TC 108
Query 143 AAGACGGGAACGAATCTAATGAACAGCCCTCTCAATCATCGTC 185
||||||| |||||||||| || ||||||||||||||| ||||
Sbjct 109 AAGACGGCAACGAATCTAGCGAGCAGCCCTCTCAATCACCGTC 151
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56983006520
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5