BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G80630.1
Length=1961
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477184 jgi|Araly1|477184|fgenesh2_kg.2__2314__AT1G80630.1 2859 0.0
> Ahg477184 jgi|Araly1|477184|fgenesh2_kg.2__2314__AT1G80630.1
Length=1923
Score = 2859 bits (1548), Expect = 0.0
Identities = 1808/1931 (94%), Gaps = 27/1931 (1%)
Strand=Plus/Plus
Query 38 ATCCATGGATTTACCTGAAGAATGTTGGGAATTAATCTGCAAAGCTATCGATGAAGACGA 97
||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||
Sbjct 1 ATCGATGGATTTACCTGAAGAATGTTGGGAACTGATCTGCAAAGCTATCGATGAAGATGA 60
Query 98 TTATCGATTCCTGGAATCTGTTTCACTCGTATCAACCTTGTTCCTCTCAATCACCAATCG 157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTATCGATTCCTGGAATCTGTTTCACTCGTATCAACCTTGTTCCTCTCAATCACCAATCG 120
Query 158 CGTTCGCTCTACTTTCGTCGTCACCGATCGAGCTGTTCCTTTACTCAATCGTCATCTCCT 217
||||||||||||||||||||||||||||||| || ||||||| |||||||||||||||||
Sbjct 121 CGTTCGCTCTACTTTCGTCGTCACCGATCGAACTCTTCCTTTTCTCAATCGTCATCTCCT 180
Query 218 TCGATTCCGCAACTTGAAGCGAATCAGGTTCTCTGATTTCACTCAGGATCTCAATTCGAT 277
||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 181 TCGATTCCGGAGCTTGAAGCGAATCAGGTTCTCTGATTTCAATCAGGATCTCAATTCGAT 240
Query 278 TCTTCTCCAGGTTTCTCGTTCCGGTTTGGATTTCGAATCGGTAGATGTCTCGCAAACGCG 337
|||||| |||||||| |||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 241 TCTTCTTCAGGTTTCGCGTTCCGGTTTGGATTTCGAATCGGTAGATGTGTCGCAAAAGCG 300
Query 338 CTATTTCCCAGATTTTGAGATGAAGAATGTCAAGGAATTGAAATGTTATGGAGTTGGAGG 397
||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 301 GTATTTTCCAGATTTTGAGAAGAAGAATGTCAAGGAATTGAAATGTTATGGAGTTGGGGG 360
Query 398 TTTTAGTGATAGCGATCTGGTTTCCATCGGAGTGAATTTTCCGTTGCTAGAGAAGCTGGA 457
|||| | ||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 361 TTTTCGAGATAGCGATCTGGTTTCGATCGGAGTGAATTTTCCGTTCCTAGAGAAGCTGGA 420
Query 458 CATTA-GCTATCCTAATTCAAGTCCGAGTCGAGTCTCTGATTCTGGTGTTATCGAGCTTT 516
|| || |||||||||| || | |||||||||||||||||||| ||| |||||||||||||
Sbjct 421 CA-TAGGCTATCCTAACTCTATTCCGAGTCGAGTCTCTGATTTTGGGGTTATCGAGCTTT 479
Query 517 CCTCGAATCTCAAAGGTTTGTTGAAGATTAACATTTCTGGTAATAGTTTCATCACAGATA 576
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 CGTCGAATCTCAAGGGTTTGTTGAAGATTAACATTTCTGGTAATAGTTTCATCACAGATA 539
Query 577 AATCTTTGATTGCTCTCTCGCAGAATTGTCTTCTCTTGAGAGAGATAATCTTCCGTGACT 636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 AATCTTTGATTGCTCTCTCGCAGAATTGTCTTCTCTTGAGAGAGATAATCTTCCGTGACT 599
Query 637 GTGATTTCATTTCGTCGGATTGCATCAAATTCGTTCTTCGCAATTCCCGTAACTTGGAGT 696
||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||
Sbjct 600 GTGATTTCATTTCGTCGGATTGCATCAAATTCGTTCTGCGCAATTCGCGGAACTTGGAGT 659
Query 697 CTCTTGCGATCAACGGAATCGGATTGAGACCGAGGGAGTCTTTGTTAACCGATGCGTTCT 756
|||| || |||||||||||||||||||| |||||||||||||| | || |||||| ||||
Sbjct 660 CTCTAGCCATCAACGGAATCGGATTGAGGCCGAGGGAGTCTTTATCAAGCGATGCTTTCT 719
Query 757 TGTTTGCTCGTTGTTTGACTGAGCTTGATCTTTCGGATTCGTTTTTGTCTGATGACTTGC 816
|||||||||| ||||||||||||||||||||||||||||||||| | || ||||| ||||
Sbjct 720 TGTTTGCTCGATGTTTGACTGAGCTTGATCTTTCGGATTCGTTTCTATCCGATGAGTTGC 779
Query 817 TCTGTTTGATTGCTAG-TGCTAAGTTACCTCTAAAGAAGCTTCTTCTCTCCGATTGCCAC 875
| |||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 780 TTTGTTTGATTGCT-GATGCCAAGTTACCTCTAAAGAAGCTTCTTCTCTCCGATTGCCAT 838
Query 876 GGTTTTACTTTTGATGGGATCTTGTATCTGCTGGAC-AAGTACCAATCACTAGTTCACTT 934
|||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||
Sbjct 839 GGTTTTACTTTTGATGGGATCTTGTATCTGCTGG-CTAAGTACCAAACACTAGTTCACTT 897
Query 935 GAACCTCAAAGGAGCAAATTTCCTCTCTGATGAGATGGTTATGAAATTAGGGATGTTCTT 994
|||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 898 GAACCTTAAAGGAGCAAATTTCCTCTCTGATGAGATGGTTATGGAATTAGGGATGTTCTT 957
Query 995 TCGGCGTTTAACCTTTTTGAATCTGAGTTTCTGTTCCAAGTTAACTGGTCTAGCATTCTT 1054
|||| |||||||||||||||| || ||||||||||||||| |||||||||||||||||||
Sbjct 958 TCGGAGTTTAACCTTTTTGAACCTTAGTTTCTGTTCCAAGCTAACTGGTCTAGCATTCTT 1017
Query 1055 TAGTATTATTGAAAGATGTGTTTCCCTGAGGTGCATGATAATGGTAGGGACGAACTTTGG 1114
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 TAGTATCATTGAAAGATGTGTTTCCCTGAGGTGCATGATAATGGTAGGGACGAACTTTGG 1077
Query 1115 AGTGGAAGAATATACCAAGGATACGAAGGATTTCAAGTCAGGGGTCAAGTTTTTGTACTT 1174
||||||||||||| ||||||| || |||| ||||||||||| ||||||||||||||||
Sbjct 1078 AGTGGAAGAATATTCCAAGGA-AC--TGGATATCAAGTCAGGGATCAAGTTTTTGTACTT 1134
Query 1175 ATCTAGAAACCACAATTTGCTCGATGAGTGTCTCGAAAAGATATCACGGCATTGCCCTTT 1234
||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 1135 TTCTAGAAACCACAATTTGCGCGATGAGTGTCTCGAGAAGATATCACGGCATTGCCCTTT 1194
Query 1235 TATAGAAAGTCTTGACGTAGCTCAGTGTCCTGGCATCACGAGAGATGGGATTCTTGAAGT 1294
| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1195 TTTAGAAAGTCTTGACGTGGCTCAGTGTCCTGGCATCACGAGAGATGGGATTCTTGAAGT 1254
Query 1295 TTGGAGGAATTGTGGCAAGCTAAGATCTTTGGACATCAGCAGATGTACGGGCATAAAGAG 1354
||||||||||||||| |||||||||||||||| |||||||||||||||||| ||| |||
Sbjct 1255 TTGGAGGAATTGTGGTGAGCTAAGATCTTTGGATATCAGCAGATGTACGGGCGTAAGGAG 1314
Query 1355 TCTTGGTGTAGTAGACTTTGAGCTTCCAAAGTTGGAGTCTTTGCGAGCATGTGGAACTTG 1414
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1315 TCTTGGTGTAGTAGACTTTGAACTTCCAAAGTTGGAGTCTTTGCGAGCATGTGGAACTTG 1374
Query 1415 GATCGACGATGAAGCCTTAGATATGATCAGCAAAAAG-TGTC-GAGGGTTGTTGCATCTT 1472
|||||| || |||||||| |||||||||||| ||||| || | |||||||||||||||||
Sbjct 1375 GATCGATGACGAAGCCTTGGATATGATCAGC-AAAAGATG-CAGAGGGTTGTTGCATCTT 1432
Query 1473 GATCTGCAAGGATGCTTGAATGTGAGTTCAAGAGGGGTGAAGGAAGTTGTGCAGAGCTGC 1532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1433 GATCTGCAAGGATGCTTGAATGTGAGTTCAAGAGGGGTGAAGGAAGTTGTGCAGAGCTGC 1492
Query 1533 ATACGTTTAAGAGAGATTAACCTCAAGTATTGTGAAGCTGATAAGAAAATGTACACTTGG 1592
||||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||
Sbjct 1493 ATACGTTTAAGAGAGATAAACCTCAAGTATTGTGAAGCTGATAATAAAATGTTCACTTGG 1552
Query 1593 ATGGTTTTTGCAAATCCATCTCTTAGGAAAATCGTACCGCCATGTGGGTTTTCTCCAACT 1652
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1553 ATGGTTTTTGCAAATCCATCTCTTAGGAAAATCGTACCGCCATGTGGTTTTTCTCCAACT 1612
Query 1653 AAAGCACTCAAGAACTTCTTTCTGCGTCATGGATGTGTAGTCTCCCAGGATTCTTCTGAG 1712
||| |||| |||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 1613 AAAAAACTCGAGAACTTCTTGCTGCGTCATGGATGTGTAATCTCCCAGGATTCTTCTGAG 1672
Query 1713 TTGCTTTCTATAGCATACCGTGCCAATGGAAGAGATGATGACACATTGACTAGACTGATT 1772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1673 TTGCTTTCTATAGCATACCGTGCCAATGGAAGAGATGATGACACATTGACTAGACTGATT 1732
Query 1773 ATTTGAGCC-ATTTGTGAAGAAAAAAGGTATCAGCATAATAGTTT-GAATGGAGAAACAG 1830
|||||||| ||||||||||||||| || ||| ||||| | | || ||||||||||||||
Sbjct 1733 ATTTGAGCTGATTTGTGAAGAAAAA-GGAATCTGCATACT-GATTAGAATGGAGAAACAG 1790
Query 1831 GGGTTAACCTTTCTTTGAGTTTATATTTGTCACTCTCG-TTGTAATAAAATTGTCAAGCC 1889
|| ||||||||| |||| |||||||||| ||||| || || ||||||||||||| ||||
Sbjct 1791 GGTTTAACCTTTGTTTGGGTTTATATTTTTCACTTTCCATT-TAATAAAATTGTCCAGCC 1849
Query 1890 AAAGGC--AAG-C----TTGCGTTGAtttttttttCAAATGTTCAGCCATCTTCTTATTC 1942
|||| | ||| | |||||||||||| |||| |||||||||||||||||||||||||
Sbjct 1850 AAAGCCCTAAGGCAGGCTTGCGTTGATTTGTTTT-CAAATGTTCAGCCATCTTCTTATTC 1908
Query 1943 AATGATAGAAG 1953
|||||||||||
Sbjct 1909 AATGATAGAAG 1919
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73704624075
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5