BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G80640.1
Length=1734
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477182 jgi|Araly1|477182|fgenesh2_kg.2__2312__AT1G80640.1 2329 0.0
> Ahg477182 jgi|Araly1|477182|fgenesh2_kg.2__2312__AT1G80640.1
Length=1610
Score = 2329 bits (1261), Expect = 0.0
Identities = 1521/1637 (93%), Gaps = 56/1637 (3%)
Strand=Plus/Plus
Query 4 TCCACGTCTTATCACCACGTCT--GGGATTAGGCACTCTTTGCTGCTTTATTAGCC-TTT 60
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||
Sbjct 1 TCCACGTCTTATCACCACGTCTGGGGGTTTAGGCACTCTTTGCTGCTTTATTAGCCTTTT 60
Query 61 TTGTCCACCTTTTCATAACTGCCACATGAAGACCAAACACCTAAA-ACCTTTGTCCTTCT 119
|| |||||||||||||||||||||||||||||||||||||| ||| |||||||| | ||
Sbjct 61 TTTTCCACCTTTTCATAACTGCCACATGAAGACCAAACACCAAAAGACCTTTGT-C--CT 117
Query 120 CTCTCTCTGTTTCCCAACTCCAACAGTGTCTCTTGTCTACATCTCCT---CCAGACAAAG 176
||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 118 -TCTCTCTGTTTCCCAACTCCAACAGTGTCTCTTGTCTCCATCTCCTCCCCCAGACAAAG 176
Query 177 ATAATCTCTAGCATTTTTCACCATCTCCATAAAAGAATTAGATAGAACACGAAGC-AGCT 235
||||||||||| | || |||||| |||||||||||||||| |||| || ||| | ||
Sbjct 177 ATAATCTCTAG-A-TTCCCACCATTTCCATAAAAGAATTAGGTAGACCAAGAA-CAAG-- 231
Query 236 TCGTACTCTTTAtctctctctctctctctttttgtcttttctctGCATATTTGT-TGATA 294
| ||||| || ||| | | ||||||| |||||||||||||||||||| ||| | |||||
Sbjct 232 -C-TACTC-TT-TCT-T-TATCTCTCTGTTTTTGTCTTTTCTCTGCATGTTTTTGTGATA 285
Query 295 CCAGACAACAAAATTAAATATGTGTCTCCTTCGTCATTTGCTACCCATTTGGGTTC---- 350
|||| |||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 286 CCAG---ACAAAACTAAATATGTGTCTCCTTGGTCATTTGCTACCCATTTGGGTTCTTGG 342
Query 351 -TTCTTGGT-TTCTTCTTCTTCTCCACTG--C-------TACTAAATCACAAGAATCTTC 399
||||| | ||||||||||||||||||| | |||||||||| ||||||||||
Sbjct 343 TTTCTTCTTCTTCTTCTTCTTCTCCACTGCTCTTGTTGTTACTAAATCAGAAGAATCTTC 402
Query 400 CGTTGTCTACGTTTCTGGTGCTTCCCCCGAAATCCCCATTTCTCAGGCTTCTCCACGAAT 459
||||||||| | || ||||| |||||||||||||||||||||||||||||||||
Sbjct 403 CGTTGTCTA-----C--GT--TTCCCACGAAATCCCCATTTCTCAGGCTTCTCCACGAAT 453
Query 460 GGGAGCTCAATCCCCAGGACCTCCCATTGTTAAAGTGGTGCTTCGCCAGGACTTGAACAA 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 454 GGGAGCTCAATCCCCAGGACCTCCCATTGTTAAAGTGGTGCTTCGCCAGGACTTGAACAA 513
Query 520 GAAGATTCTAATTGCTCTTATAGTCTCATCATCTCTGCTCTGTGTCACAGTCATGTTCCT 579
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 514 GAAGATTCTAATTGCTCTTATAGTCTCATCATCACTGCTCTGTGTTACAGTCATGTTCCT 573
Query 580 TGTGTATCTCTTGCTATGGAGGTACAGGA-ATATGAAGAACAGCTTCACCGGTATCAAAC 638
| |||||||||||||||||||||||| || |||||||||||||||||||||| |||||||
Sbjct 574 TTTGTATCTCTTGCTATGGAGGTACA-GACATATGAAGAACAGCTTCACCGGGATCAAAC 632
Query 639 GCAAA-TCCGATTCGGTGAAGAGTGTAACCACGAAACCGACTGTACACAAGATTGATTCT 697
| ||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 633 G-AAATTCCGATTCGGTGAAGAGTGTCACCACGAAACCGATTGTACACAAGATTGATTCT 691
Query 698 GTGAGGAAAGGAACCATCCCTGTGTATGAATATCAATTGCTGGAATCTGCAACAAACAAG 757
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 692 GTGAGGAAAGGAACCATCCCTGTGTATGAATATCAATTGCTGGAATCTGCAACAAACAAG 751
Query 758 TTTAGTGATAGTAATGTGTTGAGCCGAGGTGGTCGTGGATGCCTTTACAGAGCTTGTCTC 817
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 752 TTTAGTGATAGTAATGTGTTGAGCCGAGGTGGTCGTGGATGCCTTTACAGAGCTTGTCTT 811
Query 818 GATGAAAAATCCTCAGTCACTGTGAAGAAACTTGATGGCGGTGGGGAGACAGACATTGAA 877
|||||||| ||||| ||||||||||||| ||||||||| | |||||||||||||||||||
Sbjct 812 GATGAAAAGTCCTCTGTCACTGTGAAGAGACTTGATGGTGCTGGGGAGACAGACATTGAA 871
Query 878 AAACAGTTTGAGACTGAAGTAGATTGGTTGGCTAAGATCAGGCATCAGAACATAGTTTCC 937
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 872 AAACAGTTTGAGACTGAGGTAGATTGGTTGGCTAAGATCAGGCATCAGAACATAGTTTCC 931
Query 938 TTATTGGGGTTTTGCGTATATCGGCAAACGAGTTGTATTGTGTATGAGTTGATGCAGAAT 997
||||||| |||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 932 CTATTGGGATTTTGCGTATATCGCCAAACGAGTTGTATTGTGTATGAGATGATGCAGAAT 991
Query 998 GGATCTTTGGAGAGTCAGTTACATGGGCCTAGTCAAGGTTCAGGTTTAACTTGGCAGCTC 1057
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 992 GGATCTTTGGAGAGTCAGTTACATGGGCCTAGTCAAGGTTCAGGTTTAACTTGGCAGCTC 1051
Query 1058 AGGATGAAGATAGCGGTTGATATAGCGAGAGGATTAGAGTATCTTCACGAGCATTGCCAT 1117
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1052 AGGATGAAGATAGCAGTTGATATAGCAAGAGGATTAGAGTATCTTCACGAGCATTGCCAT 1111
Query 1118 CCTCCTGTAGTTCACAGAGATTTGAAATCATCTAGCATCCTTCTGGACTCCGATTTCAAT 1177
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1112 CCTCCGGTAGTTCACAGAGATTTGAAATCATCTAGCATCCTTCTAGACTCCGATTTCAAT 1171
Query 1178 GCAAAGATATCCGATTTTGGGTTTGCCACGGTTTTGACCACGCAGAATAAAAACCTGATA 1237
||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1172 GCAAAGATATCAGATTTTGGGTTTGCCACGGTGTTGACCACACAGAATAAAAACCTGATA 1231
Query 1238 CACAAGGCTTCTGAGGATCTTCTTGATGGGAAAGTTACAGACAAGAATGATGTCTACTCA 1297
||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1232 CACAAAGCTTCTGAGCATCTTCTTGATGGGAAAGTTACAGACAAGAATGATGTCTACTCG 1291
Query 1298 TTTGGAGTGATCCTGCTCGAACTTCTCCTCGGGAAGAAATCAGTGGAGAAACCGTCTTCT 1357
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1292 TTTGGAGTGATCCTCCTCGAACTTCTCCTCGGGAAGAAATCAGTGGAGAAACCGTCTTCT 1351
Query 1358 GAACCAGAATCCATCGTTACTTGGGCAGTACCTAAGCTGAGTGATAGAGCTAATCTACCA 1417
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||
Sbjct 1352 GAACCAGAATCCATCGTTACCTGGGCTGTACCTAAGCTGAGTGATAGAGCTAATCTTCCA 1411
Query 1418 AACATATTGGATCCTGCAATCAAAGGAACCATGGATTTGAAGCATCTATATCAGGTAGCT 1477
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1412 AACATCTTGGATCCTGCAATCAAAGGAACCATGGATTTGAAGCATCTATATCAGGTAGCT 1471
Query 1478 GCGGTGGCGGTGTTGTGTGTACAGCCGGAGCCAAGTTACAGACCACTTATAACCGATGTC 1537
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1472 GCGGTAGCGGTGTTGTGTGTACAGCCGGAGCCAAGTTACAGACCACTAATAACCGATGTC 1531
Query 1538 TTGCACTCACTCATCCCTCTTCTACCAGTAGAACTCGGTGGATCATTGCGGATTTTATaa 1597
||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 1532 TTGCACTCACTCATCCCTCTTTTACCAGTAGAACTCGGCGGATCATTGCGGATTTTATAA 1591
Query 1598 aaaaaCATTTCCCCTTT 1614
| | | |||||| |||
Sbjct 1592 ATTATC-TTTCCCTTTT 1607
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65058138460
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5