BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G80650.1

Length=889
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg316895 jgi|Araly1|316895|fgenesh1_pm.C_scaffold_2001928           555    3e-157


> Ahg316895 jgi|Araly1|316895|fgenesh1_pm.C_scaffold_2001928
Length=573

 Score =  555 bits (300),  Expect = 3e-157
 Identities = 373/406 (92%), Gaps = 14/406 (3%)
 Strand=Plus/Plus

Query  248  GAAGAAGAAGACAATGCCATTTCTTCCTTCTCTAACATTCAAATTGATCCTAACAGCACA  307
            ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct  133  GAAGAAGAAGACAATGCTATTTCTTCCTTCTCTAACATTCAGATTGATCCTAACAGCACA  192

Query  308  AGAAGCATTTCACTAGAGAAGAAGCTTGCTCCTAAACCAGATGAAGAACACACCACCACC  367
            ||||||||| ||| |||||| ||||||| |||||||||  | |||| | | | | |||||
Sbjct  193  AGAAGCATTACACAAGAGAATAAGCTTGTTCCTAAACC--A-GAAG-A-AGA-CGCCACC  246

Query  368  ACCAAACCC-ATATCTAAAGATGATGAATCTAAGACTAGGAGAGGCTCAGCTAAATCGGT  426
            ||||||||| || ||||||| ||| |||||||||   | ||| || ||||| ||||||||
Sbjct  247  ACCAAACCCAAT-TCTAAAGGTGACGAATCTAAG---A-GAG-GG-TCAGCAAAATCGGT  299

Query  427  GTTACACGAAATGTGTGCTTCCAAGCGTTGGAGACCTCCTGTTTATGAATGCTGCAATGT  486
            |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct  300  GTTACACGAAATATGTGCTTCCAAGCGTTGGAGACCTCCGGTTTATGAATGCTGCAAAGT  359

Query  487  TGATGGACCTTGCCATTTGAGATTATTTACATACAAAGTTATGGTTGAGATTAGAGATTC  546
            |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||
Sbjct  360  TGATGGACCTTGCCATTTGAGATTATTTACATACAAAGTTGTGGTTGAGATTATAGAGTC  419

Query  547  TTCAGGGAAAACTGTTTTGGAGTGTTTTGGGGATCCCAGACGCAAAAAGAAAGCTGCTGC  606
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  420  TTCAGGGAAAACTGTTTTGGAGTGTTTTGGGGATCCCAGACGCAACAAGAAAGCTGCTGC  479

Query  607  TGAGCATGCAGCAGAAGGAGCGCTTTGGTATCTTGAGCATGTGAAG  652
            |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  480  TGAGCATGCAGCAGAAGGAGCGCTTTGGTATCTTGAGCATGTAAAG  525



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 32938200288


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5