BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G80670.1
Length=1439
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477180 jgi|Araly1|477180|fgenesh2_kg.2__2310__AT1G80670.1 1967 0.0
Ahg334870 jgi|Araly1|334870|fgenesh1_pg.C_scaffold_1001435 797 0.0
> Ahg477180 jgi|Araly1|477180|fgenesh2_kg.2__2310__AT1G80670.1
Length=1230
Score = 1967 bits (1065), Expect = 0.0
Identities = 1161/1208 (96%), Gaps = 4/1208 (0%)
Strand=Plus/Plus
Query 47 TCTCTCTCTTCCGACTCAA-TTCGTTTTCCCTCCTCTTCTGCTTACCGGAAAAGTCTATA 105
|||| |||||||| || || ||||||||||||||||||||||| ||||||||| |||||
Sbjct 25 TCTCCCTCTTCCGCCT-AAGTTCGTTTTCCCTCCTCTTCTGCTCACCGGAAAACACTATA 83
Query 106 TCTCCGACGGACCTTCTTCTCTCTAGTTAATCAGACCTCGCGCTCGTGATAATGGCAACT 165
|||||||||||||||| || ||||||||||| ||||||| ||||||||||||||| |||
Sbjct 84 TCTCCGACGGACCTTCCTCCCTCTAGTTAATTGGACCTCGGGCTCGTGATAATGGCTACT 143
Query 166 TTTGGTGCGCCTGCTACCGCCAACAGT-AACCCTAACAAATCCTACGAGGTTACTCCATC 224
|| |||||| | || |||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 144 TTCGGTGCGTCGGCCACCGCCAACA-TCAACCCTAACAAATCCTACGAGGTTACTCCATC 202
Query 225 ACCGGCAGATTCTATTTCGAGCTTAAGTTTTAGTCCAAGAGCTGATATACTTGTGGCCAC 284
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 203 ACCCGCAGATTCTATTTCGAGCTTAAGTTTTAGTCCAAGAGCCGATATACTTGTGGCCAC 262
Query 285 TTCATGGGACAATCAGGTGAGGTGTTGGGAAATATCCCGTAGTGGAGCCTCTCTAGCCAG 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 263 TTCATGGGACAATCAGGTGAGGTGTTGGGAAATATCCCGTAGTGGAGCCTCTCTAGCTAG 322
Query 345 TGCTCCTAAAGCATCAATATCACATGATCAGCCGGTTTTATGTTCTGCTTGGAAAGATGA 404
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 323 TGCTCCCAAAGCATCAATATCGCATGATCAGCCGGTTTTATGTTCTGCTTGGAAAGATGA 382
Query 405 TGGAACCACAGTCTTTAGCGGTGGATGTGATAAGCAAGCAAAAATGTGGCCCTTGTTGTC 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 383 TGGAACCACAGTCTTTAGCGGTGGATGTGATAAGCAAGCAAAAATGTGGCCCTTGTTGTC 442
Query 465 TGGTGGTCAACCTGTAACTGTTGCTATGCATGAGGGTCCTATCGCAGCTATGGCTTGGAT 524
|||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||
Sbjct 443 TGGTGGTCAACCTGTAACCGTTGCTATGCATGATGCTCCTATCGCAGCTATGGCTTGGAT 502
Query 525 CCCGGGAATGAATCTCCTTGCAACTGGAAGTTGGGATAAAACTTTGAAATATTGGGACAC 584
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 503 CCCAGGAATGAATCTTCTTGCAACTGGAAGTTGGGATAAAACTTTGAAATATTGGGACAC 562
Query 585 AAGACAGCAAAATCCTGTACATACCCAACAGCTTCCAGACAAATGTTATACATTGTCTGT 644
|||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 563 AAGACAGCCAAATCCTGTGCATACCCAACAGCTTCCAGATAAATGTTATACATTGTCTGT 622
Query 645 GAAACATCCTCTGATGGTTGTCGGGACTGCCGATAGAAATCTGATAGTCTTCAACTTGCA 704
||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 623 GAAGCATCCTCTGATGGTTGTCGGAACTGCAGATAGAAATCTGATAGTCTTCAACTTGCA 682
Query 705 AAATCCTCAGACTGAGTTTAAGAGAATCCAATCCCCACTGAAGTACCAGACGAGGTGTGT 764
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 683 AAATCCTCAGACTGAGTTTAAGAGAATTCAATCCCCACTGAAGTACCAGACGAGGTGTGT 742
Query 765 TACTGCCTTCCCTGATCAGCAAGGTTTTTTGGTTGGTTCAATTGAGGGGCGGGTTGGTGT 824
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 743 TACTGCCTTCCCTGATCAGCAAGGATTTTTGGTTGGTTCAATTGAGGGGCGGGTTGGTGT 802
Query 825 TCATCATCTGGATGATTCTCAACAGAGCAAAAACTTCACATTCAAATGCCACAGAGATGG 884
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 803 CCATCATCTGGATGATTCTCAACAGAGCAAAAACTTCACATTCAAATGCCACAGAGATGG 862
Query 885 AAATGATATATATTCTGTCAACTCTCTGAATTTCCACCCGGTACATGGCACTTTTGCAAC 944
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 863 AAATGAGATATATTCTGTCAACTCTCTGAATTTCCACCCGGTACATGGCACTTTTGCAAC 922
Query 945 TGCTGGGTCAGATGGTGCTTTCAATTTCTGGGACAAAGATAGTAAACAAAGACTCAAGGC 1004
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 923 TGCTGGCTCAGATGGTGCTTTCAATTTCTGGGACAAAGACAGTAAACAAAGACTCAAGGC 982
Query 1005 CATGTCGAGGTGCAATCAGCCAATTCCATGCAGCTCGTTCAACCACGATGGATCGATATA 1064
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 983 CATGTCGAGGTGCAATCAGCCAATTCCTTGCAGCTCGTTCAACCATGATGGATCGATATA 1042
Query 1065 TGCATATGCGGCTTGCTATGACTGGAGCAAAGGTGCAGAAAATCACAACCCGGCGACTGC 1124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1043 TGCATATGCGGCTTGCTATGACTGGAGCAAAGGTGCAGAAAATCACAACCCGGCGACTGC 1102
Query 1125 AAAAAGCAGCATTTTCTTGCACCTGCCACAGGAAAGCGAGGTTAAGGCCAAGCCAAGAGT 1184
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 1103 AAAAAGCAGCATTTTCTTGCACCTGCCACAGGAAAACGAGGTTAAGGCCAAACCAAGAGT 1162
Query 1185 TGGAGCAACCGGCAGAAAATGAGCGTTGCTTAGTCTGATTTCTTCGCTAGTGAttttttt 1244
||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 1163 TGGAGCAACCGGCAGAAAATGAGAGTTGCTTAGTCTGATTTCATCGCTAGTGATTTTTTT 1222
Query 1245 tttttttt 1252
||||||||
Sbjct 1223 TTTTTTTT 1230
> Ahg334870 jgi|Araly1|334870|fgenesh1_pg.C_scaffold_1001435
Length=1164
Score = 797 bits (431), Expect = 0.0
Identities = 758/911 (83%), Gaps = 42/911 (5%)
Strand=Plus/Plus
Query 186 CAACAGTAACCCTAACAAATCCTACGAGGTTACTCCATCA-CCGGCAGATTCTATTTCGA 244
||||| |||||||||||| ||||||||| |||||||| || || | || ||||| || |
Sbjct 33 CAACACTAACCCTAACAACTCCTACGAGATTACTCCACCAGCC-ACCGACTCTATCTCAA 91
Query 245 GCTTAAGTTTTAGTCCAAGAGCTGATATACTTGTGGCCACTTCATGGGACAATCAGGTGA 304
|||||||||||||||||||||| ||||||||||| || ||||||||||| ||||||||
Sbjct 92 GCTTAAGTTTTAGTCCAAGAGCCGATATACTTGTAGCAACTTCATGGGATTGTCAGGTGA 151
Query 305 GGTGTTGGGAAATATCCCGTAGTGGA-GCCTCTCTAGCCAGTGCTCCTAAAGCATCAATA 363
| |||||||||||| |||||||| || | |||| ||||||||| || |||| ||||||
Sbjct 152 GATGTTGGGAAATAACCCGTAGT-GACGGCTCTATAGCCAGTGAACCAAAAGTATCAATG 210
Query 364 TCACATGATCAGCCGGTTTTATGTTCTGCTTGGAAAGATGATGGAACCACAGTCTTTAGC 423
|| |||||| | |||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 211 TCGCATGATAATCCGGTTTTGTGTTCTGCTTGGAAAGATGATGGAACCACAGTCTTTA-C 269
Query 424 -GGTGGATGTGATAAGCAAGCAAAAATGTGGCCCTTGTTGTCTGGTGGTCAACC-TGTAA 481
|| |||||||||||||| ||||| |||||||| || ||||||| || |||||| | | |
Sbjct 270 AGGAGGATGTGATAAGCAGGCAAAGATGTGGCCATTATTGTCTGCTGCTCAACCAT-TCA 328
Query 482 CTGTTGCTATGCATGAGGGTCCTATC-GC-AGCTATGGCTTGGATCCCGGGAATGAATCT 539
||||||||||||| || | ||||| || || || | |||||||||| |||||||||||
Sbjct 329 CTGTTGCTATGCACGATGCACCTATTTGCGAGATA-G-CTTGGATCCCTGGAATGAATCT 386
Query 540 CCTTG-CAACTGGAAGTTGGGATAAAACTTTGAAATATTGGGACACAAGACAG-CAAAAT 597
||||| || ||||||| ||||||||||||||||||||||||||| |||||||| ||| |
Sbjct 387 CCTTGTCA-CTGGAAGCTGGGATAAAACTTTGAAATATTGGGACGCAAGACAGGCAAC-T 444
Query 598 CCTG-TACATACCCAACAGCTTCCAGACAAATGTTATACATTGTCTGTGAAACA-TCCTC 655
|| | | |||||||||||||||||||||||||||||| ||||| | |||||| | || ||
Sbjct 445 CCAGCT-CATACCCAACAGCTTCCAGACAAATGTTATGCATTGACAGTGAAAGAATC-TC 502
Query 656 TGATGGTTGTCGGGACTGCCGATAGAAATCTGA-TAGTCTTCAACTTGCAAAATCCTCAG 714
||||||| || ||||||| ||||||||| | | |||| ||| ||||| |||| ||||||
Sbjct 503 TGATGGTCGTTGGGACTGGGGATAGAAATTT-ACTAGTTTTCGACTTGAAAAAACCTCAG 561
Query 715 ACTG-AGTTTAAGAGAATCCAATCCCCACTGAAGTACCAGACGAGGTGTGTTACTGCCTT 773
| || |||| |||||||| |||| |||||||| ||||||| |||||| || |||| ||
Sbjct 562 A-TGGAGTTCAAGAGAATTGAATCGTCACTGAAGGACCAGACAAGGTGTCTTGCTGCATT 620
Query 774 CCCTGATCAGCAAGGTTTTTTGGTTGGTTCAATTGAGGGGCGG-GTTGGTGTTCATCATC 832
||||||||| |||| ||||||||||||||||||| |||| | |||||||||||||| |
Sbjct 621 TCCTGATCAGAAAGGGTTTTTGGTTGGTTCAATTG-GGGGAAGTGTTGGTGTTCATCA-C 678
Query 833 -TGGATGATTCTCAACAGAGCAAAAACTTCACATTCAAATGCCACAGAG-ATGGAAATGA 890
| |||||| | ||| ||||||||||| ||| |||||||||||||||| | || ||| |
Sbjct 679 ATTGATGATGCACAAGTGAGCAAAAACTACACTTTCAAATGCCACAGAGTA-GGCAAT-A 736
Query 891 -TATATATTCTGTCAACTCTCTGAATTTCCACCCGGTACATGGCAC-TTT-TGCAACTGC 947
||| | ||||| || ||||||||||| |||||| |||||||||| ||| | || | |
Sbjct 737 CTATTTGCTCTGTAAATTCTCTGAATTTTCACCCGATACATGGCACGTTTAT-CAGCA-C 794
Query 948 TGGGTCAGATGGTGCTTTCAATTTCTGGGACAAAGATAGTAAA-CAAAGACTCAAGGCCA 1006
||| || |||||| | |||| ||||||||| |||||||||||| ||| |||| |||||||
Sbjct 795 TGGCTCTGATGGTACATTCAGTTTCTGGGATAAAGATAGTAAAACAA-GACTTAAGGCCA 853
Query 1007 TGTCGAGGTGCAATCAGCCAATTCCATGCAGCT-CGTTCAACCACGATGGATCGAT-ATA 1064
|||| |||||| ||||||| ||| | | ||| | ||||||| ||||| || | || ||
Sbjct 854 TGTCAAGGTGCGATCAGCCGATTACTTACAG-TACGTTCAATCACGACGGGGC-ATTATT 911
Query 1065 TGCATATGCGG 1075
||| |||||||
Sbjct 912 TGCGTATGCGG 922
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53821516185
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5