BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G80690.1 Length=1178 Score E Sequences producing significant alignments: (Bits) Value Ahg477178 jgi|Araly1|477178|fgenesh2_kg.2__2308__AT1G80690.1 1533 0.0 Ahg481377 jgi|Araly1|481377|fgenesh2_kg.4__437__AT2G25190.1 235 5e-61 > Ahg477178 jgi|Araly1|477178|fgenesh2_kg.2__2308__AT1G80690.1 Length=1120 Score = 1533 bits (830), Expect = 0.0 Identities = 1050/1149 (91%), Gaps = 43/1149 (4%) Strand=Plus/Plus Query 40 TTGTCATCAACTTATTCGACAGTTTATAT----A-AAAACCGAGTCA-TCTTTCATCGGA 93 ||||||||||||||||||||||||||||| | |||||||||||| |||||||||||| Sbjct 1 TTGTCATCAACTTATTCGACAGTTTATATAAAAATAAAACCGAGTCACTCTTTCATCGGA 60 Query 94 AGTACTTCCCTCCGGCCCATTTTCTGACGCCGGCGATActctctttcacctctttctttc 153 || |||||||||||||| |||||||||||||||||||| ||| | | || || || Sbjct 61 AGAACTTCCCTCCGGCCGATTTTCTGACGCCGGCGATA--CTC--T-A--TC--TC-CTC 110 Query 154 tttcttctctgtcttttttgctttgtttctctcCAGTGAGGAAAATGGCGGAGTCATTAC 213 | |||| | | | ||| || ||||||||||||| |||| ||||||| |||| |||||| Sbjct 111 TGTCTT-T-T-T-TTTCTT--TTTGTTTCTCTCCGGTGAAGAAAATGTTGGAGCCATTAC 164 Query 214 GATTCTCCGACTgaaaaaagaagttaaaacctttg-aaagaagaggaagaatttgaaaga 272 ||||||||| || || | | ||||| ||| |||||||||||||||||||||||| Sbjct 165 GATTCTCCG-CT----TAACTTG-T-AAACC-TTGAAAAGAAGAGGAAGAATTTGAAAGA 216 Query 273 aaggaaaaTGCTTTGCCGGAAAAACTCAAGCTTGGTGGACAGAGGAAATGTTCCGGTTTA 332 ||||||||||||||||||||||| ||||||||| ||||| ||||| |||||||||||||| Sbjct 217 AAGGAAAATGCTTTGCCGGAAAAGCTCAAGCTTTGTGGATAGAGGCAATGTTCCGGTTTA 276 Query 333 TCTGAATGTCTACGATCTTACTCCCATTAATGGCTATGCTTACTGGCTTGGTCTTGGCGT 392 ||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 277 TCTCAATGTTTACGATCTAACTCCCATTAATGGCTATGCTTACTGGCTTGGTCTTGGCGT 336 Query 393 TTACCATTCTGGTGTTGAAGTTCATGGTATAGAGTATGCTTATGGAGCTCATGAATATCC 452 ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| Sbjct 337 TTACCATTCTGGTGTTGAAGTTCATGGTATAGAGTATGCTTTTGGAGCTCATGAGTATCC 396 Query 453 AAGCACTGGGATATTCGAAGGGGAGCCGAA-GCAATGTGAAGGCTTTACGTTTAGGAAAT 511 ||||||||| || |||||||||||||| || |||||||||||||||||| |||||||||| Sbjct 397 AAGCACTGGAATTTTCGAAGGGGAGCC-AAGGCAATGTGAAGGCTTTACATTTAGGAAAT 455 Query 512 CGATTTTGATTGGTAAAACGGATCTTGGTCCTTTGGAAGTCAGAGCTACTATGGAGCAAC 571 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 456 CGATTTTGATTGGTAAAACGGATCTTGGTCCTTTGGAAGTGAGAGCTACTATGGAGCAAC 515 Query 572 TTGCTGACAACTACAAAGGAAGTTCTTACAATCTTATCACCAAGAACTGCAACCATTTCT 631 |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct 516 TTGCTGACAACTACAAAGGAAGTTCTTATAATCTCATCACCAAGAACTGCAACCATTTCT 575 Query 632 GCGATGAAACTTGTATTAAGTTAACTGGGAATCCAATTCCTAGTTGGGTTAACCGCCTTG 691 |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| Sbjct 576 GCGATGAAACTTGTATCAAGCTAACTGGGAATCCAATTCCTAGTTGGGTTAACCGCCTTG 635 Query 692 CCCGAATCGGCTTCATGTGCAACTGTGTGCTTCCTGCGACTATAAACGCGACCAGGTTTG 751 | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 636 CAAGAATCGGCTTCATGTGCAACTGTGTGCTTCCTGCGACCATAAACGCGACCAGGTTTG 695 Query 752 GAAACAACAGAGTCAATCAAGACAAATCATGTGAAGCAGAAAATGAGAAGAAGAAACTGA 811 ||||||||||| |||| ||||| |||||||||||||||||| ||||||||||||||||| Sbjct 696 GAAACAACAGAATCAACCAAGAAAAATCATGTGAAGCAGAATCTGAGAAGAAGAAACTGA 755 Query 812 CGAGTGTATCGAGCAGAGAGAGGTCTAC--C-ATTGCTACTCCTTCGTCGTCTTCTTCGT 868 | |||||||||||||||||||||||||| | |||||||||||||||||||||||||| | Sbjct 756 CCAGTGTATCGAGCAGAGAGAGGTCTACTACGATTGCTACTCCTTCGTCGTCTTCTTCAT 815 Query 869 CTCCTTCAGTTCAAGTTCGCGGTCGAAGCAGGAAAAGGCGTCCTCGTGCTCTGCAACCTT 928 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 816 CTCCTTCAGTTCAAGTCCGCGGTCGAAGCAGGAAAAGGCGTCCTCGTGCTCTGCAACCTT 875 Query 929 CATCGCCATTGACTCTCGGATCTTCCTCCGTTTGACTATAAGTAAAA-TGAAATTTGGCT 987 ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| Sbjct 876 CATCGCCATTGACTCTCGGATCTTCCTCCGTTTGACTATAAATAAAAATGAAATTTGGCT 935 Query 988 TT-GTTTGGTAAATCCATTTTTGATCTCTCAACTAGAGAGACCACTCTGTATTTC-TTCT 1045 || || | ||||||||||||||||||||||| ||||||||||||||||| |||| |||| Sbjct 936 TTCGTA-GTTAAATCCATTTTTGATCTCTCAATTAGAGAGACCACTCTGTTTTTCCTTCT 994 Query 1046 ATTAATTGCGAGTGTGCTCTGTAATCTTGTTAATATGCAAACctttttcttttctttttt 1105 ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| | Sbjct 995 CTTAATTGCGAGTGTGCTTTGTAATCTTGTTAATATGCAAACCTTCTTCTTTTCTTTCT- 1053 Query 1106 ttgtaatcttatttgcattttcttttcagattttggactttatttttACAGTCAGATATC 1165 ||||| |||||| ||||||| ||||||||||||||| ||||||||||||||| ||||| Sbjct 1054 --GTAATTTTATTTACATTTTCGTTTCAGATTTTGGACATTATTTTTACAGTCATATATC 1111 Query 1166 AAATTCTCG 1174 ||||||||| Sbjct 1112 AAATTCTCG 1120 > Ahg481377 jgi|Araly1|481377|fgenesh2_kg.4__437__AT2G25190.1 Length=1185 Score = 235 bits (127), Expect = 5e-61 Identities = 326/417 (78%), Gaps = 34/417 (8%) Strand=Plus/Plus Query 321 TGTTCCGGTTTATCTGAATGTCTACGATCTTACTCCCATTAATGGCT-ATGCTTACTGGC 379 |||||||||||||||||||||||||||||| ||||| || |||| || ||| ||| |||| Sbjct 273 TGTTCCGGTTTATCTGAATGTCTACGATCTAACTCCTATGAATG-CTTATGGTTATTGGC 331 Query 380 TTGGTCTTGGCGTTTACCATTCTGGTGTTGAAGTTCATGGTA-TAGAGTATGC-TTATGG 437 |||| ||||| |||| ||||||||||||||||||||||| | | || ||||| || ||| Sbjct 332 TTGGACTTGGTGTTTTTCATTCTGGTGTTGAAGTTCATGG-AGTTGAATATGCATT-TGG 389 Query 438 AGCTCATGAAT-ATCCAAGCACTGGGATATTCGAAGGGGAGCCGAAGCAA-TGTGAAGGC 495 ||| ||||||| ||| |||||| || ||||| |||| |||||| ||| || ||| || Sbjct 390 AGCACATGAATCATC-AAGCACAGGTATATTTGAAGTGGAGCCAAAG-AAGTGTCCCGG- 446 Query 496 TTT-ACGTTTAGGAAATCGATT-TTGATTGGTAAAACGGATCTTGGTC-CTTTGGAAGT- 551 ||| |||||||||||||||||| ||| | || ||||| || |||||| | ||||| Sbjct 447 TTTCACGTTTAGGAAATCGATTCTTG-TGGGGAAAACCGA-CTTGGTTGCGAAAGAAGTT 504 Query 552 CAGAG-CTACTATGGAGCAACTT-GCTGACA-ACTA-CAAAGGAAGTTCTTACAATCTTA 607 | ||| || ||||||| || || ||||| | | || ||| |||| ||| |||| | Sbjct 505 C-GAGTCTT-TATGGAGAAA-TTAGCTGA-AGAGTATCAA-GGAAACAAGTACCATCTCA 559 Query 608 TCACCAAGAA-CTGCAACCATTTCTGCGATGAAACTTGTATTAAG-TTAACTGGGAA-TC 664 |||| ||||| |||||||||||| ||| ||||| |||| |||| ||| || ||| || Sbjct 560 TCAC-AAGAAACTGCAACCATTTTTGCAATGAAGTTTGTCTTAAACTTA-CTCAGAAATC 617 Query 665 CAATTCCTAGTTGGGTTAACCGCCTTGCCCGAATCGGC-TTCATGTGCAACTGTGTG 720 ||| ||||| ||||| ||||| ||||| || | || ||| | ||||| |||||| Sbjct 618 -AATACCTAGATGGGTGAACCGACTTGCTCGCTTAGGGGTTC-TCTGCAATTGTGTG 672 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 43955723301 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5