BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G80690.1
Length=1178
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477178 jgi|Araly1|477178|fgenesh2_kg.2__2308__AT1G80690.1 1533 0.0
Ahg481377 jgi|Araly1|481377|fgenesh2_kg.4__437__AT2G25190.1 235 5e-61
> Ahg477178 jgi|Araly1|477178|fgenesh2_kg.2__2308__AT1G80690.1
Length=1120
Score = 1533 bits (830), Expect = 0.0
Identities = 1050/1149 (91%), Gaps = 43/1149 (4%)
Strand=Plus/Plus
Query 40 TTGTCATCAACTTATTCGACAGTTTATAT----A-AAAACCGAGTCA-TCTTTCATCGGA 93
||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||
Sbjct 1 TTGTCATCAACTTATTCGACAGTTTATATAAAAATAAAACCGAGTCACTCTTTCATCGGA 60
Query 94 AGTACTTCCCTCCGGCCCATTTTCTGACGCCGGCGATActctctttcacctctttctttc 153
|| |||||||||||||| |||||||||||||||||||| ||| | | || || ||
Sbjct 61 AGAACTTCCCTCCGGCCGATTTTCTGACGCCGGCGATA--CTC--T-A--TC--TC-CTC 110
Query 154 tttcttctctgtcttttttgctttgtttctctcCAGTGAGGAAAATGGCGGAGTCATTAC 213
| |||| | | | ||| || ||||||||||||| |||| ||||||| |||| ||||||
Sbjct 111 TGTCTT-T-T-T-TTTCTT--TTTGTTTCTCTCCGGTGAAGAAAATGTTGGAGCCATTAC 164
Query 214 GATTCTCCGACTgaaaaaagaagttaaaacctttg-aaagaagaggaagaatttgaaaga 272
||||||||| || || | | ||||| ||| ||||||||||||||||||||||||
Sbjct 165 GATTCTCCG-CT----TAACTTG-T-AAACC-TTGAAAAGAAGAGGAAGAATTTGAAAGA 216
Query 273 aaggaaaaTGCTTTGCCGGAAAAACTCAAGCTTGGTGGACAGAGGAAATGTTCCGGTTTA 332
||||||||||||||||||||||| ||||||||| ||||| ||||| ||||||||||||||
Sbjct 217 AAGGAAAATGCTTTGCCGGAAAAGCTCAAGCTTTGTGGATAGAGGCAATGTTCCGGTTTA 276
Query 333 TCTGAATGTCTACGATCTTACTCCCATTAATGGCTATGCTTACTGGCTTGGTCTTGGCGT 392
||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 277 TCTCAATGTTTACGATCTAACTCCCATTAATGGCTATGCTTACTGGCTTGGTCTTGGCGT 336
Query 393 TTACCATTCTGGTGTTGAAGTTCATGGTATAGAGTATGCTTATGGAGCTCATGAATATCC 452
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 337 TTACCATTCTGGTGTTGAAGTTCATGGTATAGAGTATGCTTTTGGAGCTCATGAGTATCC 396
Query 453 AAGCACTGGGATATTCGAAGGGGAGCCGAA-GCAATGTGAAGGCTTTACGTTTAGGAAAT 511
||||||||| || |||||||||||||| || |||||||||||||||||| ||||||||||
Sbjct 397 AAGCACTGGAATTTTCGAAGGGGAGCC-AAGGCAATGTGAAGGCTTTACATTTAGGAAAT 455
Query 512 CGATTTTGATTGGTAAAACGGATCTTGGTCCTTTGGAAGTCAGAGCTACTATGGAGCAAC 571
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 456 CGATTTTGATTGGTAAAACGGATCTTGGTCCTTTGGAAGTGAGAGCTACTATGGAGCAAC 515
Query 572 TTGCTGACAACTACAAAGGAAGTTCTTACAATCTTATCACCAAGAACTGCAACCATTTCT 631
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 516 TTGCTGACAACTACAAAGGAAGTTCTTATAATCTCATCACCAAGAACTGCAACCATTTCT 575
Query 632 GCGATGAAACTTGTATTAAGTTAACTGGGAATCCAATTCCTAGTTGGGTTAACCGCCTTG 691
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 576 GCGATGAAACTTGTATCAAGCTAACTGGGAATCCAATTCCTAGTTGGGTTAACCGCCTTG 635
Query 692 CCCGAATCGGCTTCATGTGCAACTGTGTGCTTCCTGCGACTATAAACGCGACCAGGTTTG 751
| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 636 CAAGAATCGGCTTCATGTGCAACTGTGTGCTTCCTGCGACCATAAACGCGACCAGGTTTG 695
Query 752 GAAACAACAGAGTCAATCAAGACAAATCATGTGAAGCAGAAAATGAGAAGAAGAAACTGA 811
||||||||||| |||| ||||| |||||||||||||||||| |||||||||||||||||
Sbjct 696 GAAACAACAGAATCAACCAAGAAAAATCATGTGAAGCAGAATCTGAGAAGAAGAAACTGA 755
Query 812 CGAGTGTATCGAGCAGAGAGAGGTCTAC--C-ATTGCTACTCCTTCGTCGTCTTCTTCGT 868
| |||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
Sbjct 756 CCAGTGTATCGAGCAGAGAGAGGTCTACTACGATTGCTACTCCTTCGTCGTCTTCTTCAT 815
Query 869 CTCCTTCAGTTCAAGTTCGCGGTCGAAGCAGGAAAAGGCGTCCTCGTGCTCTGCAACCTT 928
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 816 CTCCTTCAGTTCAAGTCCGCGGTCGAAGCAGGAAAAGGCGTCCTCGTGCTCTGCAACCTT 875
Query 929 CATCGCCATTGACTCTCGGATCTTCCTCCGTTTGACTATAAGTAAAA-TGAAATTTGGCT 987
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 876 CATCGCCATTGACTCTCGGATCTTCCTCCGTTTGACTATAAATAAAAATGAAATTTGGCT 935
Query 988 TT-GTTTGGTAAATCCATTTTTGATCTCTCAACTAGAGAGACCACTCTGTATTTC-TTCT 1045
|| || | ||||||||||||||||||||||| ||||||||||||||||| |||| ||||
Sbjct 936 TTCGTA-GTTAAATCCATTTTTGATCTCTCAATTAGAGAGACCACTCTGTTTTTCCTTCT 994
Query 1046 ATTAATTGCGAGTGTGCTCTGTAATCTTGTTAATATGCAAACctttttcttttctttttt 1105
||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
Sbjct 995 CTTAATTGCGAGTGTGCTTTGTAATCTTGTTAATATGCAAACCTTCTTCTTTTCTTTCT- 1053
Query 1106 ttgtaatcttatttgcattttcttttcagattttggactttatttttACAGTCAGATATC 1165
||||| |||||| ||||||| ||||||||||||||| ||||||||||||||| |||||
Sbjct 1054 --GTAATTTTATTTACATTTTCGTTTCAGATTTTGGACATTATTTTTACAGTCATATATC 1111
Query 1166 AAATTCTCG 1174
|||||||||
Sbjct 1112 AAATTCTCG 1120
> Ahg481377 jgi|Araly1|481377|fgenesh2_kg.4__437__AT2G25190.1
Length=1185
Score = 235 bits (127), Expect = 5e-61
Identities = 326/417 (78%), Gaps = 34/417 (8%)
Strand=Plus/Plus
Query 321 TGTTCCGGTTTATCTGAATGTCTACGATCTTACTCCCATTAATGGCT-ATGCTTACTGGC 379
|||||||||||||||||||||||||||||| ||||| || |||| || ||| ||| ||||
Sbjct 273 TGTTCCGGTTTATCTGAATGTCTACGATCTAACTCCTATGAATG-CTTATGGTTATTGGC 331
Query 380 TTGGTCTTGGCGTTTACCATTCTGGTGTTGAAGTTCATGGTA-TAGAGTATGC-TTATGG 437
|||| ||||| |||| ||||||||||||||||||||||| | | || ||||| || |||
Sbjct 332 TTGGACTTGGTGTTTTTCATTCTGGTGTTGAAGTTCATGG-AGTTGAATATGCATT-TGG 389
Query 438 AGCTCATGAAT-ATCCAAGCACTGGGATATTCGAAGGGGAGCCGAAGCAA-TGTGAAGGC 495
||| ||||||| ||| |||||| || ||||| |||| |||||| ||| || ||| ||
Sbjct 390 AGCACATGAATCATC-AAGCACAGGTATATTTGAAGTGGAGCCAAAG-AAGTGTCCCGG- 446
Query 496 TTT-ACGTTTAGGAAATCGATT-TTGATTGGTAAAACGGATCTTGGTC-CTTTGGAAGT- 551
||| |||||||||||||||||| ||| | || ||||| || |||||| | |||||
Sbjct 447 TTTCACGTTTAGGAAATCGATTCTTG-TGGGGAAAACCGA-CTTGGTTGCGAAAGAAGTT 504
Query 552 CAGAG-CTACTATGGAGCAACTT-GCTGACA-ACTA-CAAAGGAAGTTCTTACAATCTTA 607
| ||| || ||||||| || || ||||| | | || ||| |||| ||| |||| |
Sbjct 505 C-GAGTCTT-TATGGAGAAA-TTAGCTGA-AGAGTATCAA-GGAAACAAGTACCATCTCA 559
Query 608 TCACCAAGAA-CTGCAACCATTTCTGCGATGAAACTTGTATTAAG-TTAACTGGGAA-TC 664
|||| ||||| |||||||||||| ||| ||||| |||| |||| ||| || ||| ||
Sbjct 560 TCAC-AAGAAACTGCAACCATTTTTGCAATGAAGTTTGTCTTAAACTTA-CTCAGAAATC 617
Query 665 CAATTCCTAGTTGGGTTAACCGCCTTGCCCGAATCGGC-TTCATGTGCAACTGTGTG 720
||| ||||| ||||| ||||| ||||| || | || ||| | ||||| ||||||
Sbjct 618 -AATACCTAGATGGGTGAACCGACTTGCTCGCTTAGGGGTTC-TCTGCAATTGTGTG 672
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43955723301
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5