BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G80710.1
Length=1702
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477176 jgi|Araly1|477176|fgenesh2_kg.2__2306__AT1G80710.1 2492 0.0
> Ahg477176 jgi|Araly1|477176|fgenesh2_kg.2__2306__AT1G80710.1
Length=1693
Score = 2492 bits (1349), Expect = 0.0
Identities = 1592/1705 (93%), Gaps = 33/1705 (2%)
Strand=Plus/Plus
Query 19 TTTTTTGTTTGTGTGTAAAGAGAAAAAATCTCAATTTTCTCAAGCATCAATCAATCAATG 78
|||||| |||| ||||||||||||||| |||||||||||||||| | |||||||||||
Sbjct 1 TTTTTTTTTTGGGTGTAAAGAGAAAAAGTCTCAATTTTCTCAAG---C-ATCAATCAATG 56
Query 79 GCGACGGAGTACGAGCGGAAGAGATTGGAGAACATAAGACGGAACGATGAGATGTTGGCT 138
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 57 GCGACGGAGTACGAGCGGAAGAGATTGGAGAACATAAGACGGAACGATGAGATGATGGCG 116
Query 139 GCTCTCAATGTCCGCGCCAAAGCTTCTTCTCTTCTCT---CCG----C-C-GCCAAACGC 189
|||||||||||||| |||||||| ||||||||||||| ||| | | |||||||||
Sbjct 117 GCTCTCAATGTCCGTGCCAAAGCCTCTTCTCTTCTCTCGGCCGCAACCGCAGCCAAACGC 176
Query 190 TCTCGAGATGATTCTAAATCTTTTAAGAAGAAGAAGCCCAAACCTGCT---TCAACGCCC 246
|||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||
Sbjct 177 TCTCGAGATGATTCTAAATCATTTAAGAAAAAGAAGCCCAAACCTGCTACAACAACGCCC 236
Query 247 ACTGTTATCCGAATGTCTCTACGCACCAGAGGTTTGAATCCAGATTCCGCTGGCTTACCT 306
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 237 ACTGTTATCCGAAAGTCTCTACGCACCAGAGGTTTGAATCCAGATTCCGGTGGCTTACCT 296
Query 307 GAT-GGCTTTTCAGATTTCCGGATGGGTTCTCAGATCACACACAACCAACCATCTCCTCA 365
||| || ||||||||||||||||||||||||||||||||||||||| |||| |||||| |
Sbjct 297 GATAGG-TTTTCAGATTTCCGGATGGGTTCTCAGATCACACACAACAAACCGTCTCCTAA 355
Query 366 GAAGCAATCGCCGCGTCTTTTGGCTCCTATTCCCTTCGAATCCGCGTATGAAGGATACGG 425
|||||||||||| ||||| ||||||||| | |||||||| || || ||||||||| | ||
Sbjct 356 GAAGCAATCGCCACGTCTATTGGCTCCTCTGCCCTTCGATTCTGCTTATGAAGGAGATGG 415
Query 426 TTCTTATACGCAATTGGTTGATACTCTTTTGGGTATTGAGAGTAAGTCTTGTAGAGGCAA 485
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 416 TTCTTATACGCAATTGGTTGATACTCTTTTGGGTGTTGAGAGTAAGTCTTGTAGAGGCAA 475
Query 486 ATTGGTTAAGGGAGAAATTGGAGT-GGTTAAGGATGAGAACGAGTCTCCTATGGTGAGGA 544
||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||| |
Sbjct 476 ATTGGTTAAGGGAGAAACTGGA-TCGGTTAAGGATGAGAACGAGTCTCCTATGGTGAGCA 534
Query 545 CTAGGAGTAGTTCTCGTGTATCTAAAGTTTCTGTTAAAAAGGAAGAGCCTGAAGATGATT 604
||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 535 CTAGGAGTACTTCTCGTGTATCTAAAGTTTTTGTTAAAAAGGAAGAGCC---AGATGATT 591
Query 605 CCTTCAGTGATTATGTGAACAAGGAATTTAG-TATTCCGGTTAAGCCTGAGAAAATTGAG 663
|||||||||||| |||||| ||||||||| | ||||||||| |||| |||||||||||||
Sbjct 592 CCTTCAGTGATTGTGTGAAGAAGGAATTT-GATATTCCGGTGAAGCTTGAGAAAATTGAG 650
Query 664 TTTGATCTGGATTTGTTGACTTTAGAACCGCAGAATGTAGCTCGTGTTGTGCCTGGGAGG 723
||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 651 TTTGATCAGGATTTGTTGAGTTTAGAACCGCATAATGTAGCTCGTGTTGTGCCTGGGAGG 710
Query 724 ATTTTTGTTGTCCAGTTCTTACCTTGCGAGAATGTTAAGATGGTTGCTGCAGGGGACAAA 783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 711 ATTTTTGTTGTCCAGTTCTTACCTTGCGAGAATGTTAAGATGGTTGCTGCAGGGGACAAA 770
Query 784 CTTGGGAATGTTGGGTTTTGGAATTTGGATTGTGGGAATGAGGAAGATAATGATGGGATA 843
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 771 CTTGGGAATGTTGGGTTTTGGAATTTGGATTGTGAGAATGAGGAAGATAATGATGGGATA 830
Query 844 TATCTATTCACTCCTCACTCAGCACCAGTTTCATCTATTGTGTTTCAGCAAAACTCTTTA 903
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 831 TATCTATTCACTCCTCACTCAGCACCAGTTTCATCTATCGTGTTTCAGCAAAACTCTCTA 890
Query 904 TCAAGGGTTATTAGCAGCAGCTATGATGGTCTCATCCGGTTGATGGATGTCGAGAAGTCG 963
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 891 TCAAGGGTTATTACCAGCAGCTATGATGGTCTCATCCGGTTGATGGATGTCGAGAAGTCG 950
Query 964 GTTTTTGATCTGGTTTATTCCACGGACGAAGCTATATTTTCACTCTCGCAGAGACCAAAT 1023
|||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 951 GTTTTTGATCTGCTTTATTCCACGGATGAAGCTATATTTTCGCTCTCGCAGAGACCAAAT 1010
Query 1024 GATGAGCAAAGCTTGTACTTTGGTCAGGATTATGGAGTGTTCAATGTATGGGACCTCCGA 1083
|||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||
Sbjct 1011 GATGAGCAAAGCTTGTACTTTGGTGAGGATTATGGAATGTTCAATATATGGGACCTCCGA 1070
Query 1084 GCAGGAAAGTCAGTTTTCCATTGGGAGTTACATGAACGGAGGATTAACTCTATAGACTTC 1143
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1071 GCAGGAAAATCAGTTTTCCATTGGGAGTTACATGAACAGAGGATTAACTCTATAGACTTC 1130
Query 1144 AACCCGCAGAATCCGCATGTCATGGCGACAAGTTCCACAGATGGAACTGCTTGCCTTTGG 1203
|||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1131 AACCCGCAAAATCCCCATGTCATGGCTACAAGTTCCACAGATGGAACTGCTTGCCTTTGG 1190
Query 1204 GACTTGAGAAGCATGGGAGCCAAAAAACCGAAAACATTGTCTACTGTTAATCATTCTAGG 1263
||| |||||||||||||||||||||||||||||| |||| ||||| | ||||||||||||
Sbjct 1191 GACCTGAGAAGCATGGGAGCCAAAAAACCGAAAATATTGACTACTCTAAATCATTCTAGG 1250
Query 1264 GCTGTGCACTCTGCTTATTTCTCACCTTCTGGCCTTTCACTTGCAACTACAAGCCTTGAC 1323
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1251 GCTGTGCACTCTGCTTATTTCTCACCTTCTGGCCTTTTACTTGCAACTACAAGCCTTGAC 1310
Query 1324 AACTACATTGGTGTTCTAAGCGGCGCCAATTTTGAGAACACTTGCATGATATATCACAAT 1383
|||||||||||| ||||||||||||| ||||||||||| |||| || |||||||||||||
Sbjct 1311 AACTACATTGGTATTCTAAGCGGCGCAAATTTTGAGAATACTTACAAGATATATCACAAT 1370
Query 1384 AA---CACCAGCAGATGGATCTCCAAATTCAAGGCAGTATGGGGGTGGGATGATTCATAC 1440
|| ||||||||| |||||||||||||||| || ||| |||||||||||||||||||||
Sbjct 1371 AATAACACCAGCAGGTGGATCTCCAAATTCAGGGGAGTGTGGGGGTGGGATGATTCATAC 1430
Query 1441 ATCTATGTGGGCAATTTGTCAAAGAAGATTGATGTGATCAATCCAAAACTAAAGCGAACA 1500
|||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1431 ATCTATGTTGGCAATTTGTCAAAAAAGATTGATGTGATCAATCCGAAACTAAAGCGAACA 1490
Query 1501 GTGATGGAACTGCATAACCCTCTGCA-GAGAGCTATACCATGCAGAATCCATTGCCATCC 1559
|||||||||||||||||||||||| | || |||||||||||||||||||||||| |||||
Sbjct 1491 GTGATGGAACTGCATAACCCTCTG-ATGAAAGCTATACCATGCAGAATCCATTGTCATCC 1549
Query 1560 TTATAATGTTGGAACGCTTGCAGGATCCACAGCTGGAGGACAAGTCTATGTTTGGACAAC 1619
|||||||||||| || |||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 1550 TTATAATGTTGGGACACTTGCAGGATCCACAGCTGGAGGACAGGTCTATGTTTGGACAGC 1609
Query 1620 AAAGTAGCATACTTGACCTATTTG-AATTAGCATGAGATGTTGTGTTGTTTTGTTATGTT 1678
|||||||| ||||||||| |||| |||||||||||| ||||||||||||||||| |||
Sbjct 1610 AAAGTAGCCTACTTGACC-ATTTTCAATTAGCATGAGGTGTTGTGTTGTTTTGTTCTGTC 1668
Query 1679 GTACA-AAGAAATGGAAGCAAGTTT 1702
||||| |||||||||||||||||||
Sbjct 1669 GTACAGAAGAAATGGAAGCAAGTTT 1693
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63839250620
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5