BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G80720.1
Length=942
Score E
Sequences producing significant alignments: (Bits) Value
Ahg340150 jgi|Araly1|340150|fgenesh1_pg.C_scaffold_2002249 1205 0.0
> Ahg340150 jgi|Araly1|340150|fgenesh1_pg.C_scaffold_2002249
Length=729
Score = 1205 bits (652), Expect = 0.0
Identities = 700/724 (97%), Gaps = 0/724 (0%)
Strand=Plus/Plus
Query 1 TCGCTTCGTCAGATGTCTGAGAAGAACACTCTTTTCTAATTCGTCTCCTTCTATTGCTCA 60
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 6 TCGCTTCGTCAGATGTCTGAGAAGAACACTCTTTTCTAATTCGTCTCCTTCAATTGCTTA 65
Query 61 CCGGAGCCCTAGGATTGGTTTGCCCACGAATCTAAATCCTAAAATTTTAATCAGCCGCAG 120
||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||
Sbjct 66 CCGGAGCCCTAGGATTGGTTTGCCCTCGAATCAAAATCCTAAATTTTTAATCAGCCGCAG 125
Query 121 ATGTCTGAGCTCCGGGAGTTACGTCTCAGAAATGCAGAAATCAGCTTTCCAGGGCAACAT 180
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 126 ATGTCTGAGCTCCGGGAGTTACGTGTCAGAAATGCAGAAATCAGCTTTCCAGGGCAACAT 185
Query 181 TTTGCGACTGATCCGTAATGAGATTGAGTACGAACTCGATCACTCGCCTCCTCTTCAGCC 240
||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 186 TTTACGACTGATCCGCAATGAGATTGAGTACGAACTCGATCACTCGCCTCCGCTTCAGCC 245
Query 241 TCCTAACAGTTTTGGTCCATTCACTGTGGATGAACGGCCTGGAGAGCAGTGGATTAGCTT 300
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 246 TCCTGACAGTTTTGGTCCATTCACTGTGGATGAACGGCCTGGAGAGCAGTGGATTAGCTT 305
Query 301 GAAAAGGAATTTTGGGGATAAAGAAGACATCAAAATTGAAGCAACTATGTTTGATAGATC 360
||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 306 GAAAAGGAAATTTGGAGATAAAGAAGACATCAAAATTGAAGCAACCATGTTTGATAGATC 365
Query 361 AGTTCCCACGTCAAAATCTACCAAAACTGAACCTGAATATATTCTTCACATCACTTTCAT 420
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 366 AGTTCCGACGTCAAAATCTACCAAAACTGAACCTGATTATATTCTTCACATCACTTTCAT 425
Query 421 TGTCAACATCTCCAAGGCTGGTGCTACTGAAGCTTTAGAGATCATGTGTTCTGCTTGGCC 480
||||||||||||||||| |||||||| ||||| |||||||||||||| ||||||||||||
Sbjct 426 TGTCAACATCTCCAAGGGTGGTGCTAGTGAAGTTTTAGAGATCATGTCTTCTGCTTGGCC 485
Query 481 AGATACCATAGAGATATCGAAGCTCTGCATTCGTAGAGGCATCAACACTTCACCCTCTTC 540
||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||
Sbjct 486 AGATACCATAGAGATATCGAAGCTCTGCATTCGTAAAGGCATCAACACTTCAGCTTCTTC 545
Query 541 CTATGGTGGACCAGAGTTTGAGGAATTAGATGATCAGCTTCAAGACGCACTCTATCAATT 600
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 546 CTATGGTGGACCAGAGTTTGAGGAATTAGATGATCAGCTTCAAGACGCACTTTATCAATT 605
Query 601 TTTAGAGGAAAGAGGTATAAGCGACGAGCTTGCTGTTTTCTTGCATCGGTATATGAAGAA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 606 TTTAGAGGAAAGAGGTATAAGCGACGAGCTTGCTGTTTTCTTGCATCGGTATATGAAGAA 665
Query 661 CAAAGGTAAAGCTGAGTACGTTAGATGGATGGAGAGCGTTAAATCCTATGTTGAGCAAAA 720
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 666 CAAAGGTAAAGCTGAGTACGTTAGATGGATGGAGAGCGTTAAATCTTATGTTGAGCAAAA 725
Query 721 ATAG 724
||||
Sbjct 726 ATAG 729
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34958714889
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5