BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G80730.1
Length=925
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477174 jgi|Araly1|477174|fgenesh2_kg.2__2304__AT1G80730.1 1188 0.0
> Ahg477174 jgi|Araly1|477174|fgenesh2_kg.2__2304__AT1G80730.1
Length=897
Score = 1188 bits (643), Expect = 0.0
Identities = 843/932 (90%), Gaps = 43/932 (5%)
Strand=Plus/Plus
Query 1 CAATTCTTTTACTTTCATTCTCTTTATATATTCTCTCTACGCTATAATATATATTACACA 60
||||| ||||||||||||||||||||||||||||||||| || ||| |||| |
Sbjct 1 CAATTTTTTTACTTTCATTCTCTTTATATATTCTCTCTAGGC-------CATA-TACAGA 52
Query 61 GAATATACATGGAACCGTCCATCAAAGGAGATCAAGAAATGTTAAAAATCAAGAAACAAG 120
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 53 GAATATACATGGATCCGTCCATCAAAGGAGATCAAGAAATGTTAAAAATCAAGAAACAAG 112
Query 121 GTCATCAAGATCTTGAGTTGGGGTTGACCCTTTTGTCACGTGGAACCGCGACCTCATCAG 180
|||||||||||||||||||||| |||||||||||| ||||||||||| |||| || ||||
Sbjct 113 GTCATCAAGATCTTGAGTTGGGTTTGACCCTTTTGCCACGTGGAACCACGACTTCGTCAG 172
Query 181 AGCTCAATCTCATCGATTCTTTCAAAACCAGCTCATCATCGACTTCTCATCATCAGCACC 240
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||| || |
Sbjct 173 AGCTCAATCTCATCGATTCTTTTAAAACCAGCTCATCGTCGACTTCTCATCATCATCAAC 232
Query 241 AGCAAGAACAATTGGCAGATCCGAGAGTGTTCTCGTGTAATTATTGTCAAAGAAAGTTCT 300
|||||||||| ||||||||||||||||||||||| || || |||||||||||||||||||
Sbjct 233 AGCAAGAACATTTGGCAGATCCGAGAGTGTTCTCTTGCAACTATTGTCAAAGAAAGTTCT 292
Query 301 ATAGTTCACAAGCGCTAGGCGGTCACCAAAACGCTCATAAACGTGAGCGCACCTTAGCCA 360
|||| |||||||| |||||||| |||||||||||||||||||| ||||||||||| ||||
Sbjct 293 ATAGCTCACAAGCACTAGGCGGCCACCAAAACGCTCATAAACGCGAGCGCACCTTGGCCA 352
Query 361 AACGTGGACAGTATTACAAGATGACTCTCTCCTCCTTGCCTTCTTCAGCGTTTGCGTTTG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 353 AACGTGGACAGTATTACAAGATGACTCTCTCCTCCTTGCCTTCTTCAGCGTTTGCGTTTG 412
Query 421 GCCACGGTTCAGTCAGCAGATTCGCAAGCATGGCATCGTTACCATTACATGGCTCGGTGA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 413 GCCACGGTTCAGTCAGCAGATTCGCAAGCATGGCATCGTTACCATTACATGGCTCGGTGA 472
Query 481 ATAACAGGTCAACGTTAGGGATTCAAGCTCATTCAACGATCCATAAGCCCAGCTTCTTAG 540
|||||||||| ||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 473 ATAACAGGTCGACGTTAGGGATTCAAGCTCATTCAACGATCCATAAGCCCT--TT-TTAG 529
Query 541 GAAGACAAACGACGAGTTTAAGTCATGTTTTCAAACAGAGCATTCACCAGAAACCGACCA 600
||||||| ||| |||||||||| ||| ||||||||||||||||| |||||||||||||||
Sbjct 530 GAAGACATACGGCGAGTTTAAGCCATATTTTCAAACAGAGCATTAACCAGAAACCGACCA 589
Query 601 TAGGAAAGATGTTGCCGGAGAAATTTCACCTTGAAGTCGCCGGAAATAATAACAGTAACA 660
| ||||||||||||||||||||||||||||||||||||||||| | | ||||||||||
Sbjct 590 TCGGAAAGATGTTGCCGGAGAAATTTCACCTTGAAGTCGCCGGCAGTGATAACAGTAA-- 647
Query 661 TGGTTGCTGCTAAGTTGGAGAGAATTGGACATTTCAAGAGCAACCAAGAAGATCATAATC 720
| | | | | |||||||||||||||| || |||||||| |||||||
Sbjct 648 -G---------A--T-G-A-----TTGGACATTTCAAGAGAAATCAAGAAGACCATAATC 688
Query 721 AGTTTAAGAAAATTGACTTGACTCTTAAGCTATGAGCTCT------GCCATCTTCTTTTT 774
|||||||||| ||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 689 AGTTTAAGAAGATTGACTTGACTCTTAAGCTATGAGCTCTTAAATTGTCATCTTCTTTTT 748
Query 775 AGTCTTCATTATAACttttttt--ATTCTCATCTTTGTTTGATATAATGATTGACGGCAG 832
|||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 749 AGTCTTCATTATAACTTTTTTTTTATTCTCATATTTGTTTGATATAATGATTGACGGCAG 808
Query 833 GGTGTGTTAGAGTTTCACTAATGATCAAGTTGTACTTTTTATATATTTCATTGATACCTT 892
|||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||
Sbjct 809 GGTGTGTTAGAGTTTCACTAAT---CAAGTTGTACTTTTTATATATTCCATTGATGCCTT 865
Query 893 GTTGATGTAATTCAATATTTTAGGTCTGTTTT 924
|| | ||||||||||||||| |||||| ||||
Sbjct 866 GTGGGTGTAATTCAATATTTGAGGTCTATTTT 897
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34310625300
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5