BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G80740.1
Length=2593
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927425 jgi|Araly1|927425|scaffold_202986.1 1221 0.0
Ahg907286 jgi|Araly1|907286|Al_scaffold_0002_367 204 3e-51
> Ahg927425 jgi|Araly1|927425|scaffold_202986.1
Length=2673
Score = 1221 bits (661), Expect = 0.0
Identities = 954/1093 (87%), Gaps = 30/1093 (3%)
Strand=Plus/Plus
Query 1 ATGGCAGCGAGAAACAAACAAAAGAAACGCGCTGAGCCAGAGTCAGATCTGTGCTTCGCT 60
||||||| || ||||||||| | |||||||||||||||||||||||||||||| || |||
Sbjct 23 ATGGCAGTGAAAAACAAACAGATGAAACGCGCTGAGCCAGAGTCAGATCTGTGTTTTGCT 82
Query 61 GGCAAACCAATGTCTGTTGTGGAGTCGACGATTCGATGGCCTCATCGCTACCAATCCAAG 120
|| |||||| |||||||||| ||||||| ||||||||||||||||||||||| |||||||
Sbjct 83 GGGAAACCAGTGTCTGTTGTCGAGTCGATGATTCGATGGCCTCATCGCTACCCATCCAAG 142
Query 121 AAAACAAAGCTCCAAGCTCCGACCAAAAAACCTGCAAATAAGGGTGGCAAAAAAGAAGAT 180
||||||||||| ||||| | | | | || | ||||||| | |||||| ||
Sbjct 143 AAAACAAAGCTTGAAGCT--G--C----GA-CGGCGACGAAGGGTGAC-AAAAAG--GA- 189
Query 181 GAAGAGATAATAAAGCAAGCTAAATGCCACTTTGA-CAAAGCTTTGGTTGATGGAGTTCT 239
|| || ||||||| ||| ||| | |||| || | ||||||||||||||||||||||
Sbjct 190 -AA-AG---ATAAAGCTAGCGAAACGTCACTACGAGC-AAGCTTTGGTTGATGGAGTTCT 243
Query 240 CATCAACCTAAACGACGATGTCTATGTCACGGGTCTACCAGGGAAGCTGAAATTCATTGC 299
||||||||| || ||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 244 CATCAACCTCAATGACGATGTCTACGTCACGGGTCTACCAGGGAAGCTGAATTTCATTGG 303
Query 300 AAAAGTTATCGAGCTCTTTGAAGCTGATGATGGGGTGCCGTATTGTCGCTTTCGATGGTA 359
||||||||| || | || ||||| |||||||||||||| || | ||| |||||||||
Sbjct 304 AAAAGTTATTGAAATGTTCGAAGCAGATGATGGGGTGCCTTACTCTCGGATTCGATGGTT 363
Query 360 CTATC-GGCCTGAAGATACTTTAATCGAAAGATTTTCCCACCTTGTGCAACCAAAGAGAG 418
|| | | || || |||||||| |||||||||||| || | ||||||||| |||||| |
Sbjct 364 TTA-CAGACCCGATGATACTTTGATCGAAAGATTTGCCGAACTTGTGCAAAAAAAGAGGG 422
Query 419 TGTTTCTCTCAAATGATGAGAATGACAATCCTCTCACCTGCATCTGGTCAAAAGTCAACA 478
||||||| ||||||| |||| | || ||||||||||||||||| | || ||||||||||
Sbjct 423 TGTTTCTATCAAATGTTGAGGACGATAATCCTCTCACCTGCATTTATTCGAAAGTCAACA 482
Query 479 TCGCTAAAGTCCCATTACCTAAGATTACCTCCAGAATCGAGCAAAGGGTTATTCCTCCTT 538
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 483 TCGCTAAAGTCCCATTACCAAAGATTACCTCCAGAATCGAGCAAAGGGTTATTCCTCCAT 542
Query 539 GTGATTACTACTACGATATGAAGTACGAAGTTCCTTATCTCAACTTTACAAGTGCAGATG 598
|||| || ||||| ||||||||||||||||| || ||||| || ||||||||||||||||
Sbjct 543 GTGACTATTACTATGATATGAAGTACGAAGTGCCATATCTGAATTTTACAAGTGCAGATG 602
Query 599 ATGGTAGTGATGCCTCATCAAGTCTTTCAAGTGACTCTGCCTTGAATTGCTTTGAAAATC 658
||| || || ||| ||||||| |||||||||||| || |||| |||||||||||||| ||
Sbjct 603 ATGATACTGCTGCGTCATCAACTCTTTCAAGTGATTCCGCCTCGAATTGCTTTGAAACTC 662
Query 659 TCCACAAGGATGAAAAAT-TCTTATTGGATCTATACAGTGGGTGCGGAGCGATGTCCACA 717
||||||| |||||||||| | ||||||||||| |||||||| ||||||||||||||||||
Sbjct 663 TCCACAAAGATGAAAAATAT-TTATTGGATCTGTACAGTGGATGCGGAGCGATGTCCACA 721
Query 718 GGTTTCTGCATGGGAGCTTCCATATCAGGAGTAAAATTGATTACGAAATGGTCTGTGGAT 777
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 722 GGTTTCTGCATGGGAGCTTCCATAGCAGGAGTAAAATTGATTACGAAATGGTCTGTGGAT 781
Query 778 ATAAATAAGTTTGCTTGTGATAGTCTTAAACTTAATCATCCTGAAACAGAGGTGAGAAAC 837
|||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||
Sbjct 782 ATAAATAAGTTTGCTTGTGATAGTTTTAGACATAATCATCCTGAAACAGAGGTGAGAAAT 841
Query 838 GAAGCCGCAGAAGATTTTCTAGCTCTTCTCAAAGAATGGAAAAGGCTCTGTGAGAAG-TT 896
||||| ||||||||||||||| ||| |||||||||||||||||||||||||| ||| ||
Sbjct 842 GAAGCTGCAGAAGATTTTCTAATTCTCCTCAAAGAATGGAAAAGGCTCTGTGA-AAGGTT 900
Query 897 TTCTCTCGTTTCAAGCACCGAACCAGTGGAATCAATTTCTGAGTTAGAAGATGAAGAA-G 955
||||||| |||||||||| |||||| ||||||||| ||||||||| |||||||||||| |
Sbjct 901 TTCTCTCATTTCAAGCACTGAACCAATGGAATCAACTTCTGAGTTGGAAGATGAAGAAAG 960
Query 956 TTGAAGAAAATGATGACATAGATGAGGCAAGTACTGGTGCTG-AACTCGAACCTGGAGAG 1014
| || ||||||||||||||||||||||||||||||||| || ||||| | | ||||||
Sbjct 961 T-GACGAAAATGATGACATAGATGAGGCAAGTACTGGTA-TGGAACTCTCAGCGGGAGAG 1018
Query 1015 TTTGAAGTAGAAAAGTTCCTTGGCATCATGTTTGGAGATCCTCAAGGCACAGGGGAAAAG 1074
||||||||||||||||| |||||||| | |||||||||||| |||||||||||||||||
Sbjct 1019 TTTGAAGTAGAAAAGTTTGTTGGCATCGTTTTTGGAGATCCTAAAGGCACAGGGGAAAAG 1078
Query 1075 ACACTTCAACTTA 1087
|||||||| ||||
Sbjct 1079 ACACTTCATCTTA 1091
Score = 985 bits (533), Expect = 0.0
Identities = 683/754 (91%), Gaps = 15/754 (2%)
Strand=Plus/Plus
Query 1615 GATTTACAAGTTGGACGTATTCAAATGGAG-TTCCTTAAATTGGACAACGCTCTTACGCT 1673
|||||||||||||||| | |||||| |||| || ||| |||| |||||||||||||||||
Sbjct 1424 GATTTACAAGTTGGACTTGTTCAAAAGGAGCTT-CTTCAATTAGACAACGCTCTTACGCT 1482
Query 1674 GGCTGATGCTATTAGTGATCTGCCACCGGTGACAAATTATGTGGCAAATGATGTAATGGA 1733
|||||||||||||||||| || |||||||||||||||| || |||||||||||||| |||
Sbjct 1483 GGCTGATGCTATTAGTGACCTACCACCGGTGACAAATTCTGAGGCAAATGATGTAA-GGA 1541
Query 1734 -TTATAATGATGCTGCTCCTAAGACAGAGTTTGAGAACTTTATTAGCCTCAAAAGATCTG 1792
||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 1542 ATTATAATGATGCTGCTCCTAAGACAGATTTTGAGAACTTTATTAGCCTTAAAAGATCTG 1601
Query 1793 AGACACTTTTACCCGCATTTGGTGGAGATCCGACACGCAGGTTGTTTGATCACCAACCCC 1852
||||||| ||||||| || ||||||||||||| ||||||||||||||||||| || || |
Sbjct 1602 AGACACTATTACCCGTATGTGGTGGAGATCCGGCACGCAGGTTGTTTGATCATCAGCCTC 1661
Query 1853 TCGTATTAGGAGATGATGACTTGGAAAGAGTTTCCTACATACCAAAACAGAAGGGGGCAA 1912
| | |||| ||||||| |||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1662 TTGAATTAAGAGATGACGACTTGGAAAGAATTTCCTACATACCAAAAAAGAAGGGGGCAA 1721
Query 1913 ACTATCGCGACATGCCTGGTGTTTTAGTTCACAACAACAAAGCGGAAATTAATCCT-AGG 1971
| | ||| || ||||||||||||||||||||||||||||||||| || |||| ||| |||
Sbjct 1722 ATTTTCGTGATATGCCTGGTGTTTTAGTTCACAACAACAAAGCGCAACTTAA-CCTTAGG 1780
Query 1972 TTT---CGAGCAAAGTTGAAATCTGGAAAAAATGTGGTCCCTGCTTATGCAATTTCATTC 2028
| ||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 1781 GTGAAGCGAGCAAAGTTAAAATCTGGAAAGAATGTGGTCCCTGCTTATGCAGTTTCATTC 1840
Query 2029 ATAAAAGGAAAATCAAAAAAGCCGTTTGGTAGACTT-TGG-GGTGATGAAATCGTTAACA 2086
||||||||||||||||||||||| ||||||||| || ||| || || ||||| |||||||
Sbjct 1841 ATAAAAGGAAAATCAAAAAAGCCTTTTGGTAGA-TTGTGGTGG-GACGAAATAGTTAACA 1898
Query 2087 CTGTTGTGACAAGGGCTGAACCTCACAACCAGTGTGTAATCCATCCAATGCAAAACCGTG 2146
| |||||||||||||| ||||||||||||||||| |||||||||||||||||| | ||||
Sbjct 1899 CGGTTGTGACAAGGGCAGAACCTCACAACCAGTGCGTAATCCATCCAATGCAAGAGCGTG 1958
Query 2147 TGTTGTCTGTTCGTGAGAATGCGAGATTACAGGGGTTCCCTGATTGTTACAAGCTCTGTG 2206
|||||||||| ||||||||||| ||| |||| ||||||||||||||||||||||| ||||
Sbjct 1959 TGTTGTCTGTCCGTGAGAATGCCAGACTACAAGGGTTCCCTGATTGTTACAAGCTTTGTG 2018
Query 2207 GAACAATTAAGGAAAAGTACATCCAGGTTGGGAATGCTGTGGCAGTTCCTGTAGGGGTTG 2266
| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2019 GCTCAATTAAGGAAAAGTACATCCAGGTTGGGAATGCAGTGGCAGTTCCTGTAGGGGTTG 2078
Query 2267 CATTAGGATATGCCTTTGGTATGGCGAGTCAAGGACTGACGGATGATGAACCAGTAATCA 2326
| ||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 2079 CGTTAGGATATGCATTTGGTATGGCGAGTCAAGGACTGACGGATGATGAGCCTGTAATCA 2138
Query 2327 AGCTGCCATTCAAGTATCCC-GAATGCATGCAGG 2359
||||||| |||||||| ||| |||||||||||||
Sbjct 2139 AGCTGCCCTTCAAGTA-CCCTGAATGCATGCAGG 2171
Score = 468 bits (253), Expect = 1e-130
Identities = 306/332 (92%), Gaps = 2/332 (1%)
Strand=Plus/Plus
Query 1215 GGGTACTGTCTACACAGTGTGCGGTGGGCC-CCCTTGCCAAGGGATCAGTGGGTATAACC 1273
||||||||| ||| | |||||||||||||| ||| ||||||||||||||||| |||||||
Sbjct 1093 GGGTACTGTTTACTCTGTGTGCGGTGGGCCACCC-TGCCAAGGGATCAGTGGCTATAACC 1151
Query 1274 GGTATAGAAACAATGAAGCACCGCTTGAAGATCAGAAGAACCAGCAACTTTTGGTGTTTT 1333
||| ||||||||| ||||||||||||| ||| |||| ||||||||||||||||||||||
Sbjct 1152 GGTTTAGAAACAAACAAGCACCGCTTGAGGATAAGAAAAACCAGCAACTTTTGGTGTTTT 1211
Query 1334 TAGACATCATTGACTTCCTCAAGCCAAACTATGTGCTGATGGAAAATGTTGTAGACCTTC 1393
||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||
Sbjct 1212 TAGACATCATTGACTTCCTCAAGCCAAGTTACGTGCTTATGGAAAATGTTGTAGACCTTC 1271
Query 1394 TTAGGTTTTCAAAGGGTTTCCTGGCACGTCATGCTGTAGCTAGCTTTGTTGCGATGAATT 1453
|||||||||||||||||| |||||||||||||||||| |||||||||||||| |||||||
Sbjct 1272 TTAGGTTTTCAAAGGGTTACCTGGCACGTCATGCTGTGGCTAGCTTTGTTGCCATGAATT 1331
Query 1454 ACCAGACGCGGTTGGGCATGATGGCTGCTGGATCTTATGGGCTCCCTCAGCTTAGAAACA 1513
||||||||||||||||||||||| |||||||||| || || ||||||||| |||||||||
Sbjct 1332 ACCAGACGCGGTTGGGCATGATGACTGCTGGATCCTACGGTCTCCCTCAGGTTAGAAACA 1391
Query 1514 GGGtttttttATGGGCTGCACAACCATCAGAG 1545
|||||||||||||||| ||||||||| |||||
Sbjct 1392 GGGTTTTTTTATGGGCCGCACAACCAACAGAG 1423
> Ahg907286 jgi|Araly1|907286|Al_scaffold_0002_367
Length=2199
Score = 204 bits (110), Expect = 3e-51
Identities = 239/301 (79%), Gaps = 10/301 (3%)
Strand=Plus/Plus
Query 2003 TGGTCCCTGCTTATGCAATTTCATTCATA-A-AAGGAAAATCAAAAAAGCCGTTTGGTAG 2060
|||| ||| ||||||||| || | ||| | | |||||||| |||||||| |||||| |
Sbjct 1778 TGGTACCTAATTATGCAATCACA-T-ATAGAGATGGAAAATCTAAAAAGCCATTTGGTCG 1835
Query 2061 ACTTTGGGGT--GATGAAATCGTTAACACTGTTGTGACAAGGGCTGAACCTCACAACCAG 2118
|||| ||| ||||| || ||||||| || |||||||| || ||||||||||||||
Sbjct 1836 --TTTGTGGTACGATGAGATTATTAACACGGTCGTGACAAGAGCACAACCTCACAACCAG 1893
Query 2119 TGTGTAATCCATCCAATGCAAAACCGTG-TGTTGTCTGTTCGTGAGAATGCGAGATTACA 2177
|||||| | || |||| ||||||||| | | || || | || || ||||| ||| ||||
Sbjct 1894 TGTGTACTTCACCCAAAGCAAAACCGAGTTCTT-TCAGCCCGCGAAAATGCAAGACTACA 1952
Query 2178 GGGGTTCCCTGATTGTTACAAGCTCTGTGGAACAATTAAGGAAAAGTACATCCAGGTTGG 2237
|| || |||||||| || | ||| | ||| | || | ||||||||||||||||||||
Sbjct 1953 AGGATTTCCTGATTGCTATAGGCTTTACGGACCTGTTGATGAAAAGTACATCCAGGTTGG 2012
Query 2238 GAATGCTGTGGCAGTTCCTGTAGGGGTTGCATTAGGATATGCCTTTGGTATGGCGAGTCA 2297
||||||||| || ||||| || |||||||| ||||||||||| ||||| |||||||||||
Sbjct 2013 GAATGCTGTTGCTGTTCCAGTCGGGGTTGCCTTAGGATATGCGTTTGGGATGGCGAGTCA 2072
Query 2298 A 2298
|
Sbjct 2073 A 2073
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97777658915
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5