BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G80745.1
Length=566
Score E
Sequences producing significant alignments: (Bits) Value
Ahg909634 jgi|Araly1|909634|Al_scaffold_0002_2715 429 1e-119
Ahg478984 jgi|Araly1|478984|fgenesh2_kg.3__1685__AT3G15420.1 409 1e-113
> Ahg909634 jgi|Araly1|909634|Al_scaffold_0002_2715
Length=300
Score = 429 bits (232), Expect = 1e-119
Identities = 285/309 (92%), Gaps = 9/309 (3%)
Strand=Plus/Plus
Query 143 ATGGAGGATGAACATGTTATGATTGATCTTGATGACGTTTCAAGGCACATTGACATTCCA 202
|||||||| || |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGGACGAGTATGTTATGATCGATCTTGATGACGTTTCAAGGCACATTGACATTCCA 60
Query 203 GCAGATGCTCCTTATACTTTATCAGGTTTGGATACTTTGAATCCGGTGTTGACCATAGAT 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 61 TCAGATGCTCCTTATACTTTATCAGGTTTGGATACTTTGAATCCGGTGTTGACCATTGAT 120
Query 263 GGCAAAATGAAGCTGGTAGGAGAATATATAGCAACGATTGGTACATGCCTTGCTTTCTCT 322
| |||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 121 GACAAAATCAAGCTGGTTGGAGAATATATAGAAACGATTGGTACATGCCTTGCTTTCTCT 180
Query 323 GACAAAGGTGATAACCAGACGCCACAGAAGAAGACAGTTGAACCTGTTGCCAAACTCCAC 382
|||||| |||| |||||||||||||||||||||||||||| || |||||||||
Sbjct 181 GACAAATGTGAAAACCAGACGCCACAGAAGAAGACAGTTG--CC-------AAACTCCAC 231
Query 383 AAGATTCTCAAGTTTAGGTTAGCACCATTAGACAACGAAGATGGAGTAACAAAAACAACC 442
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 232 AAGATTCTCAAGTTTAGGTTAGCACCATTAGACAGTGAAGATGGAGTAACAAAAACAACC 291
Query 443 AATTTGTAA 451
| |||||||
Sbjct 292 ACTTTGTAA 300
> Ahg478984 jgi|Araly1|478984|fgenesh2_kg.3__1685__AT3G15420.1
Length=398
Score = 409 bits (221), Expect = 1e-113
Identities = 341/396 (86%), Gaps = 20/396 (5%)
Strand=Plus/Plus
Query 97 GGTT-TCGAATTTGCTCGAAAGATT-----G--AAAGGaaa-aaa-aGAAAGAGAGATGG 146
|||| ||| |||||||||||||||| | ||| ||| ||| ||||||||||||||
Sbjct 1 GGTTCTCGTATTTGCTCGAAAGATTCAAGGGAAAAACTAAAGAAAGAGAAAGAGAGATGG 60
Query 147 AGGATGAACATGTTATGATTGATCTTGATGACGTTTCAAGGCACATTGACATTCCAGCAG 206
|||| ||| |||||||||||||||||||||| ||||||||||||||||| |||||| |||
Sbjct 61 AGGAGGAATATGTTATGATTGATCTTGATGAAGTTTCAAGGCACATTGAGATTCCATCAG 120
Query 207 ATGCTCCTTATACTTTATCAGGTTTGGATACTTTGAATCCGGTGTTGACCATAGATGGCA 266
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 121 ATGCTCCTTATACTTTATCAGGTTTGGATACATTGAATCCGGTGTTGACCATTGATGGCA 180
Query 267 AAATGAAGCTGGTAGGAGAATATATAGCAACGATTGGTACATGCCTTGCTTTCTCTGACA 326
||| |||||||| ||||||||||| | ||| |||||||||||||||||||||||||| |
Sbjct 181 GAATCAAGCTGGTTGGAGAATATATTGAAACAATTGGTACATGCCTTGCTTTCTCTGA-A 239
Query 327 AAGGT-GA--TAACCAG-ACGCCA---CA-GAAGAAGACAGTTGAACCTGTTGCCAAACT 378
|||| || | | || | | | || |||||||| ||||||||||||||| |||||
Sbjct 240 AAGGAAGAAGTTTC-AGCAAGTGAAAACAAGAAGAAGATAGTTGAACCTGTTGCAAAACT 298
Query 379 CCACAAGATTCTCAAGTTTAGGTTAGCACCATTAGACAACGAAGATGGAGTAACAAAAAC 438
|||||||||||| |||||||| |||||| ||||||| || || ||||||| || ||||||
Sbjct 299 CCACAAGATTCTTAAGTTTAGATTAGCAGCATTAGAAAATGATGATGGAGAAATAAAAAC 358
Query 439 AACCAATTTGTAAAAGTTTTTCTCTTGTTCAAGTCA 474
|| || |||||||||||||||| |||||||||||||
Sbjct 359 AAACACTTTGTAAAAGTTTTTCCCTTGTTCAAGTCA 394
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20680329238
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5