BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G80750.1
Length=975
Score E
Sequences producing significant alignments: (Bits) Value
Ahg909633 jgi|Araly1|909633|Al_scaffold_0002_2714 1225 0.0
> Ahg909633 jgi|Araly1|909633|Al_scaffold_0002_2714
Length=744
Score = 1225 bits (663), Expect = 0.0
Identities = 717/744 (96%), Gaps = 0/744 (0%)
Strand=Plus/Plus
Query 102 ATGGCTGAGGAAGAAGCTAAGGGTTTGGATTACATACCGGAGATAGTACTGAAGAAGAGG 161
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 ATGGCTGAAGAAGAAGCTAAGGGTTTGGATTACATACCGGAGATTGTACTGAAGAAGAGG 60
Query 162 AAGAACAGAGATGAGCTTGCCTTTATCAGGAAGAAGCAACTTGAGTTGGGTAATTCCGGC 221
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 61 AAGAACAGAGATGAGCTTGCCTTTATCAGGAAGAAGCAACTTGAGTTGGGCAATTTCGGC 120
Query 222 AAGAAGAAGAAGAAAGTCTCTGATATCAAACGTCCTGAAGATTTTGTTCATGAGTTCAGG 281
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 121 AAGAAGAAGAAGAAAGTCTCTGATATCAAACGTCCTGAAGATTTTGTGCTTGAGTTCAGG 180
Query 282 GCTAAGGAAGTAGATATGATCCGGATGAAGCAAAGAGTAAAGAGGCCAAAGTCATCTCCT 341
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GCTAAGGAAATAGATATGATCCGGATGAAGCAAAGAGTAAAGAGGCCAAAGTCATCTCCT 240
Query 342 CCACCAGTTAAATCTGACCTGGTTTTCATCATACGCATTCAAGGCAAGAATGATATGCAC 401
|||||||||||||| ||||| ||||| ||||||||||| |||||||||||||||||||||
Sbjct 241 CCACCAGTTAAATCAGACCTCGTTTTTATCATACGCATACAAGGCAAGAATGATATGCAC 300
Query 402 CCAAAGACCAAGAGGATTCTTAACAATTTGCAACTAAAGAGCGTCTTTACTGGTGTATTT 461
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 301 CCAAAGACCAAGAGGATTCTTAACAATTTGCAACTTAGGAGCGTCTTTACTGGTGTATTT 360
Query 462 GCTAAAGCAACTGACAGTTTGTTCCAAAAGCTTCTCAAAGTGCAGCCTTATGTCACTTAT 521
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GCCAAAGCAACTGACAGTTTGTTCCAAAAGCTTCTCAAAGTGCAGCCTTATGTCACTTAT 420
Query 522 GGATACCCGAATGATAAGAGTGTTAAGGACCTTATATACAAAAAGGGATGCACAATCATT 581
|||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||||
Sbjct 421 GGATACCCGAATGATAAGAGCGTTAAGGACCTCATATACAAAAAGGGATACACAATCATA 480
Query 582 GAGGGAAATCCTGTTCCTCTTACCGACAACAATATAATCGAACAGGCTCTAGGAGAACAC 641
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 481 GAGGGAAATCCTGTTCCTCTTACTGACAACAACATAATCGAACAGGCTCTAGGAGAACAC 540
Query 642 AAAATCTTGGGCATAGAAGACCTTGTGAATGAGATAGCAAGAGTCGGAGATCATTTCAGA 701
|||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 541 AAAATCTTTGGCATAGAAGACCTTGTGAATGAGATAGCAAGAGTTGGCGATCATTTCAGA 600
Query 702 GAAGTTATGAGATTCTTGGGACCCTTGAAACTCAACAAGCCTGTGGCTGATGTTTTGCAC 761
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GAAGTTATGAAATTCTTGGGACCCTTGAAACTCAACAAGCCTGTGGCTGATGTTTTGCAC 660
Query 762 CGGAAGAAACAAGTTTTCAGCGAAGGAGGAGATACCGGAAACCGCGAAGATAAGATCAAT 821
|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 661 GGGAAGAAACAAGTTTTCAGCGAAGGAGGAGATACTGGAAATCGCGAAGATAAGATCAAT 720
Query 822 GATCTCATCAGCAAAATGAATTAG 845
||||||||||||||||||||||||
Sbjct 721 GATCTCATCAGCAAAATGAATTAG 744
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36216771150
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5