BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G80760.1
Length=1212
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477170 jgi|Araly1|477170|fgenesh2_kg.2__2300__AT1G80760.1 1581 0.0
Ahg887390 jgi|Araly1|887390|Al_scaffold_0627_1 1179 0.0
> Ahg477170 jgi|Araly1|477170|fgenesh2_kg.2__2300__AT1G80760.1
Length=1089
Score = 1581 bits (856), Expect = 0.0
Identities = 950/995 (95%), Gaps = 7/995 (1%)
Strand=Plus/Plus
Query 127 TAAAAACAATCATAGCAAAAACATATATCCTCAAATT-A-AT-TAGATCTCATCTATCTC 183
||||||||||||||||||||||||||||||||||||| | || | ||||| ||| ||||
Sbjct 77 TAAAAACAATCATAGCAAAAACATATATCCTCAAATTAAGATCT-CATCTC-TCTCTCTC 134
Query 184 TACCCTCGACATGGATCATGAGGAAATTCCATCCACGCCCTCAACGCCGGCGACAACCCC 243
|| |||||| ||||||||||||||||||||||| | ||||||||||||||| ||||||||
Sbjct 135 TAGCCTCGATATGGATCATGAGGAAATTCCATCAATGCCCTCAACGCCGGCTACAACCCC 194
Query 244 GGGGACTCCAGGAGCGCCGCTCTTTGGAGGATTCGAAGGGAAGAGGAATGGACACAATGG 303
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 195 GGGGACACCAGGAGCACCGCTCTTTGGAGGATTCGAAGGGAAGAGGAATGGACACAATGG 254
Query 304 TAGATACACACCAAAGTCACTTCTCAAAAGCTGCAAATGTTTCAGTGTTGACAATGAATG 363
|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 255 TAAATACACACCAAAGTCACTTCTAAAAAGCTGCAAATGTTTCAGTGTTGACAATGAATG 314
Query 364 GGCTCTTGAAGATGGAAGACTCCCTCCGGTCACTTGCTCTCTCCCTCCCCCTAACGTTTC 423
||||||||||||||||||||||||||||||| |||||||||||||||||||||| || ||
Sbjct 315 GGCTCTTGAAGATGGAAGACTCCCTCCGGTCTCTTGCTCTCTCCCTCCCCCTAATGTCTC 374
Query 424 CCTCTACCGCAAGTTGGGAGCAGAGTTTGTTGGGACATTGATCCTGATATTCGCCGGAAC 483
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 375 CCTCTACCGCAAGTTGGGAGCAGAGTTTGTTGGGACATTGATCCTAATATTCGCTGGAAC 434
Query 484 AGCGACGGCGATCGTGAACCAGAAGACAGATGGAGCTGAGACGCTTATTGGTTGCGCCGC 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 435 AGCGACGGCGATCGTGAACCAGAAGACAGATGGAGCTGAGACGCTTATTGGTTGCGCCGC 494
Query 544 CTCGGCTGGTTTGGCGGTTATGATCGTTATATTATCGACCGGTCACATCTCCGGGGCACA 603
||||||||||||||||||||||||||||| |||||||| |||||||| |||||||| ||
Sbjct 495 GTCGGCTGGTTTGGCGGTTATGATCGTTATTTTATCGACTGGTCACATATCCGGGGCGCA 554
Query 604 TCTCAATCCGGCTGTAACCATTGCCTTTGCTGCTCTCAAACACTTCCCTTGGAAACACGT 663
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 555 TCTCAATCCGGCTGTCACTATTGCCTTTGCTGCTCTCAAACACTTCCCTTGGAAACACGT 614
Query 664 GCCGGTGTATATCGGAGCTCAGGTGATGGCCTCCGTGAGTGCGGCGTTTGCACTGAAAGC 723
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 615 GCCGGTGTACATCGGAGCTCAGGTGATGGCCTCCGTGTGTGCGGCGTTTGCACTGAAAGC 674
Query 724 AGTGTTTGAACCAACGATGAGCGGTGGCGTGACGGTGCCGACGGTGGGTCTCAGCCAAG- 782
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 675 AGTGTTTGAACCAACGATGAGCGGTGGCGTGACGGTGCCGACGGTGGGTCTAAGCCAAGC 734
Query 783 CTTTCGCCTTGGAATTCATTATCAGCTTCAACCTCATGTTCGTTGTCACAGCCGTAGCCA 842
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 735 CTTT-GCCTTGGAGTTCATTATCAGCTTCAACCTCATGTTCGTTGTCACAGCCGTAGCCA 793
Query 843 CCGACACGAGAGCTGTGGGAGAGTTGGCGGGAATTGCCGTAGGAGCAACGGTCATGCTTA 902
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 794 CCGACACGAGAGCTGTGGGAGAGTTGGCGGGAATTGCGGTAGGAGCAACGGTCATGCTTA 853
Query 903 ACATACTTATAGCTGGACCTGCAACTTCTGCTTCGATGAACCCTGTAAGAACACTGGGTC 962
||||||| ||||||||||| |||||||||||||||||||| |||||||||||||| ||||
Sbjct 854 ACATACTCATAGCTGGACCAGCAACTTCTGCTTCGATGAATCCTGTAAGAACACTAGGTC 913
Query 963 CAGCCATTGCAGCAAACAATTACAGAGCTATTTGGGTTTACCTCACTGCCCCCATTCTTG 1022
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 914 CAGCCATTGCAGCAAACAATTACAGAGCTATTTGGGTTTACCTCACTGCCCCGATTCTTG 973
Query 1023 GAGCGTTAATCGGAGCAGGTACATACACAATTGTCAAGTTGCCAGAGGAAGATGAAGCAC 1082
| ||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||
Sbjct 974 GCGCGTTAATCGGAGCAGGAACATACACGATTGTGAAGTTGCCAGAGGAAGATGAAGCAC 1033
Query 1083 CCAAAGAGAGGAGGAGCTTCAGAAGATGAAAAACA 1117
||||||||||||||||||||||||||||||| |||
Sbjct 1034 CCAAAGAGAGGAGGAGCTTCAGAAGATGAAAGACA 1068
> Ahg887390 jgi|Araly1|887390|Al_scaffold_0627_1
Length=729
Score = 1179 bits (638), Expect = 0.0
Identities = 697/726 (96%), Gaps = 2/726 (0%)
Strand=Plus/Plus
Query 194 ATGGATCATGAGGAAATTCCATCCACGCCCTCAACGCCGGCGACAACCCCGGGGACTCCA 253
||||||||||||||||||||||| | ||||||||||||||| |||||||||||||| |||
Sbjct 1 ATGGATCATGAGGAAATTCCATCAATGCCCTCAACGCCGGCTACAACCCCGGGGACACCA 60
Query 254 GGAGCGCCGCTCTTTGGAGGATTCGAAGGGAAGAGGAATGGACACAATGGTAGATACACA 313
||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 61 GGAGCACCGCTCTTTGGAGGATTCGAAGGGAAGAGGAATGGACACAATGGTAAATACACA 120
Query 314 CCAAAGTCACTTCTCAAAAGCTGCAAATGTTTCAGTGTTGACAATGAATGGGCTCTTGAA 373
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCAAAGTCACTTCTAAAAAGCTGCAAATGTTTCAGTGTTGACAATGAATGGGCTCTTGAA 180
Query 374 GATGGAAGACTCCCTCCGGTCACTTGCTCTCTCCCTCCCCCTAACGTTTCCCTCTACCGC 433
||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||
Sbjct 181 GATGGAAGACTCCCTCCGGTCTCTTGCTCTCTCCCTCCCCCTAATGTCTCCCTCTACCGC 240
Query 434 AAGTTGGGAGCAGAGTTTGTTGGGACATTGATCCTGATATTCGCCGGAACAGCGACGGCG 493
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 241 AAGTTGGGAGCAGAGTTTGTTGGGACATTGATCCTAATATTCGCTGGAACAGCGACGGCG 300
Query 494 ATCGTGAACCAGAAGACAGATGGAGCTGAGACGCTTATTGGTTGCGCCGCCTCGGCTGGT 553
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 301 ATCGTGAACCAGAAGACAGATGGAGCTGAGACGCTTATTGGTTGCGCCGCGTCGGCTGGT 360
Query 554 TTGGCGGTTATGATCGTTATATTATCGACCGGTCACATCTCCGGGGCACATCTCAATCCG 613
|||||||||||||||||||| |||||||| |||||||| |||||||| ||||||||||||
Sbjct 361 TTGGCGGTTATGATCGTTATTTTATCGACTGGTCACATATCCGGGGCGCATCTCAATCCG 420
Query 614 GCTGTAACCATTGCCTTTGCTGCTCTCAAACACTTCCCTTGGAAACACGTGCCGGTGTAT 673
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GCTGTCACTATTGCCTTTGCTGCTCTCAAACACTTCCCTTGGAAACACGTGCCGGTGTAC 480
Query 674 ATCGGAGCTCAGGTGATGGCCTCCGTGAGTGCGGCGTTTGCACTGAAAGCAGTGTTTGAA 733
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 481 ATCGGAGCTCAGGTGATGGCCTCCGTGTGTGCGGCGTTTGCACTGAAAGCAGTGTTTGAA 540
Query 734 CCAACGATGAGCGGTGGCGTGACGGTGCCGACGGTGGGTCTCAGCCAAGC-TTTCGCCTT 792
||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||
Sbjct 541 CCAACGATGAGCGGTGGCGTGACGGTGCCGACGGTGGGTCTAAGCCAAGCCTTT-GCCTT 599
Query 793 GGAATTCATTATCAGCTTCAACCTCATGTTCGTTGTCACAGCCGTAGCCACCGACACGAG 852
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GGAGTTCATTATCAGCTTCAACCTCATGTTCGTTGTCACAGCCGTAGCCACCGACACGAG 659
Query 853 AGCTGTGGGAGAGTTGGCGGGAATTGCCGTAGGAGCAACGGTCATGCTTAACATACTTAT 912
||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||| ||
Sbjct 660 AGCTGTGGGAGAGCTGGCGGGAATTGCGGTAGGAGCAACGGTCATGCTTAATATACTCAT 719
Query 913 AGCTGG 918
||||||
Sbjct 720 AGCTGG 725
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45251902479
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5