BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G80770.1
Length=1685
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477163 jgi|Araly1|477163|fgenesh2_kg.2__2293__AT1G80770.1 2242 0.0
> Ahg477163 jgi|Araly1|477163|fgenesh2_kg.2__2293__AT1G80770.1
Length=1533
Score = 2242 bits (1214), Expect = 0.0
Identities = 1337/1397 (96%), Gaps = 6/1397 (0%)
Strand=Plus/Plus
Query 114 AAAGTTTTCT-TCTTTCTTGTTCGGAACTCAGAAACACGATGAAATTGGCCTCGAGCTTG 172
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 31 AAAGTTTT-TATCTTTCTTGTTCGGAACTCAGAAACACGATGAAATTGGCCTCGAGCTTG 89
Query 173 GTTCCTCATCAATGGCGTCTCTTAACATCACCACAGCTTTCTCTACAAGCTTTCATTTTC 232
||||||||||| |||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 90 GTTCCTCATCAGTGGCGTCTTTTAACATCACCACAGCTTTCTCTACAAGCTCTCATTTTT 149
Query 233 TCCACAGCCTCCACCACAAAGTCTCACACTTTCTGGTCTCCAAGC-TTGCGTCAATGTCG 291
|| ||||| |||| ||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 150 TCTTCAGCCAACACCCCAAAGTCTCACACTTTCTGGTCTCCAA-CTTTGCGTCAATGTCG 208
Query 292 GAATCTTCAGACGGCTCTTTCTCCAATCGTCAGTTCTAGCTACTTGCCCACTTCCTACAT 351
||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 209 AAATCTTCAGACGGCTGTTTCTCCAATCGTCAGTTCAAGCTACTTGCCCACTTCCTACAT 268
Query 352 CACTCAGAAGCAGATTGAAATCCCTACCTCCCCTGAAAAACAATCGCCACCAGTGCAGGA 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 269 CACTCAGAAGCAGATTGAAATCCCTACCTCCCCTGAAAAACAATCGCCACCAGTGCAGGA 328
Query 412 AGGTTTGGGTGCTTTTCAAAAACTGCCCATGGTCATGCCATCTATTGATTTGTA-TGCTT 470
||||||||||||||||||||||||||||||||| ||||||||||||||||| || || ||
Sbjct 329 AGGTTTGGGTGCTTTTCAAAAACTGCCCATGGTGATGCCATCTATTGATTTATATTG-TT 387
Query 471 CTGCTCTCAGGAAGTCTAAAAGAGTCCAACCAACTAAAGGCATTGCTAATATTGCTAAGC 530
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 388 CTGCTCTCAGGAAGTCCAAAAGAGTCCAACCAACTAAAGGCATTGCTAATATTGCAAAGC 447
Query 531 GAGAAAGAAATAGAGGTGCTAAACAGCTTGATGCATTCATGAAAGAACTGGCTCTACCTT 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 448 GAGAAAGAAATAGAGGTGCTAAACAGCTTGATGCATTCATGAAAGAACTGGCTCTTCCTT 507
Query 591 TAAAAGGCTACATGGAAAGTTTTCCCAGGAAGAAACTCTTGCATCCATATGAAAGGTCTC 650
||||||| ||||||||||||||||| ||||||| |||| |||||||||||||||||||||
Sbjct 508 TAAAAGGATACATGGAAAGTTTTCCGAGGAAGAGACTCCTGCATCCATATGAAAGGTCTC 567
Query 651 TTATTGACTTGACACTTGGTGATGGAAAGTATGAAGAGGTGTTAGGAAAAGTTGATGTTC 710
||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 568 TTATTAACTTGACACTTGGTGATGGGAAGTATGAAGAGGTGTTAGGGAAAGTTGATGTTC 627
Query 711 TGAGGAAGAAGGTGCAATCTGTTGGAAAGGAACATGCTTCTCTCTGCGCCAAGGCTTTGT 770
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 628 TGAGGAAAAAGGTGCTATCTGTTGGAAAGGAACATGCTTCTCTCTGCGCCAAGGCTTTGT 687
Query 771 CAAAGAAGGAGGCAGAGGAACGCTTGAGCGAAGGTGTGGAGAAGCTGGAATTGGTTTTCC 830
||||||| || |||||||||||||||| |||||||||||||||||| ||| |||||||||
Sbjct 688 CAAAGAAAGAAGCAGAGGAACGCTTGAACGAAGGTGTGGAGAAGCTTGAACTGGTTTTCC 747
Query 831 AACAACAAGGGGGAGCTGTTGATGATTTGCTAACTATAGCGAAGGTTTTGAGGGCTATGC 890
||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 748 AACAACAAGGGAGAGCTGTTGATGATTTGCTAAGTATAGCGAAGGTTTTGAGGGCTATGC 807
Query 891 CAGTTGTTGACTTGGAAATGCCGACTCTTTGCCTTGTCGGAGCACCAAACGTTGGGAAGT 950
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 808 CAGTTGTTGACTTGGAAATGCCGACTCTTTGCCTTGTCGGAGCACCAAACGTTGGCAAAT 867
Query 951 CATCATTGGTTCGCATACTGTCAACAGGGAAGCCTGAGATTTGCAATTATCCTTTCACAA 1010
|||| ||||| ||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 868 CATCGTTGGTCCGCATTCTTTCAACAGGGAAGCCTGAGATTTGCAATTATCCTTTCACAA 927
Query 1011 CCAGAGGAATTCTGATGGGTCACATCGTTTTAAACTACCAACGATTTCAGGTTACAGACA 1070
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 928 CCAGAGGAATTCTGATGGGTCACATCGTTTTAAACTACCAACGATTTCAGGTTACAGACA 987
Query 1071 CCCCTGGCCTTCTTAGGAGATGCGATGAGGATAGGAATAATCTAGAGAAGTTAACTCTTG 1130
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 988 CCCCTGGCCTTCTTAGGAGATGTGATGAGGATAGGAATAATCTAGAGAAGTTAACTCTTG 1047
Query 1131 CTGTACTCACTCATCTTCCAACCGCGGTTCTATATGTTCATGATCTAACGGGAGAATGTG 1190
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1048 CTGTACTCACTCATCTTCCAACCGCGGTTCTATATGTTCATGATCTAACTGGAGAATGTG 1107
Query 1191 GGACTTCTCCTTCTGATCAGTTTCAAATATATAAAGAGATGAAAGAGAGGTTTAAGGATT 1250
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 1108 GGACTTCTCCTTCTGATCAGTTTCGAATTTATAAAGAGATGAAAGAGAGGTTTAAGGATT 1167
Query 1251 ACCTGTGGATTGATGCTGTGTCCAAATGCGATCTGCTGGGAGGCTCACCGGTGATGTATG 1310
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1168 ACCTGTGGATTGATGCTGTGTCCAAATGTGATCTGCTGGGAGGCTCACCGGTGATGTATG 1227
Query 1311 CCAAAGAAGATAGAAGCAGTGATGACGCGGAAATCATTAAGTACCGGGAAAGAGGACCTG 1370
||||||||||||||||||| |||||||||||||||||||||||| | |||| ||||||||
Sbjct 1228 CCAAAGAAGATAGAAGCAGCGATGACGCGGAAATCATTAAGTACAGAGAAACAGGACCTG 1287
Query 1371 ATGAATCAATTCATGTCTCGGTGAAAACAGAACAAGGTCTCAATGAGCTAAAGAACAAAG 1430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1288 ATGAATCAATTCATGTCTCGGTGAAAACAGAACAAGGTCTCAATGAGCTAAAGAACAAAG 1347
Query 1431 TGAAGGAAGTACTGAGTAGTGAGATGGAGAAGATCCAAAGTGGAGAGAAAACTGATCAAA 1490
|||||||||||||||||| |||||||||||||||| |||||||||| |||| ||||||||
Sbjct 1348 TGAAGGAAGTACTGAGTAATGAGATGGAGAAGATCAAAAGTGGAGATAAAATTGATCAAA 1407
Query 1491 GTGTTGCTACTTGCTAG 1507
|||||| |||||| |||
Sbjct 1408 GTGTTGGTACTTGTTAG 1424
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63191716455
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5