BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G80820.1
Length=1283
Score E
Sequences producing significant alignments: (Bits) Value
Ahg351538 jgi|Araly1|351538|fgenesh1_pg.C_scaffold_6002131 370 1e-101
> Ahg351538 jgi|Araly1|351538|fgenesh1_pg.C_scaffold_6002131
Length=552
Score = 370 bits (200), Expect = 1e-101
Identities = 236/254 (93%), Gaps = 0/254 (0%)
Strand=Plus/Plus
Query 354 ATGTTGGAGCCGGCGGTGAACGGAGCCAAGTTCGTGATTGACGCAGCGGCTAAAGCCAAG 413
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 ATGTTGGAGCCGGCGGTAAACGGAGCCAAGTTCGTGATTGATGCAGCGGCTAAAGCCAAG 60
Query 414 GTCAAGCGCGTGGTTTTCACGTCATCAATTGGTGCAGTTTACATGAACCCTAACCGTGAC 473
|||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 61 TTCAAGCCCGTGGTTTTCACGTCATCAATTGGTTTAGTTTACATTAACCCTAACCGTGAC 120
Query 474 ACTCAAGCCATTGTTGACGAAAACTGCTGGAGTGATCTTGATTTCTGCAAAAACACTAAG 533
|| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 121 CCTAAAGCCATAGTTGACGAAAACTGCTGGAGTGATCTTGATTTCTGCAAAAATACTAAG 180
Query 534 AATTGGTATTGCTACGGGAAGATGTTGGCGGAACAATCGGCATGGGAGACGGCCAAAGCA 593
|||||||||||||||||||||||| ||| |||||||||||| ||||||||||| || | |
Sbjct 181 AATTGGTATTGCTACGGGAAGATGGTGGTGGAACAATCGGCGTGGGAGACGGCGAAGGAA 240
Query 594 AAAGGTGTGGACTT 607
|||||||| |||||
Sbjct 241 AAAGGTGTAGACTT 254
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47958629586
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5