BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G80840.1
Length=1195
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477161 jgi|Araly1|477161|fgenesh2_kg.2__2291__AT1G80840.1 1816 0.0
> Ahg477161 jgi|Araly1|477161|fgenesh2_kg.2__2291__AT1G80840.1
Length=1168
Score = 1816 bits (983), Expect = 0.0
Identities = 1121/1185 (95%), Gaps = 19/1185 (2%)
Strand=Plus/Plus
Query 1 AACAATCCCACCATTAAAAAAGAAGAACCCAAGATCGACTCTTACTTCGAATCTCTCTCA 60
||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1 AACAATCCCACAATAAAAAAAGAAGAACCCAAGATCGACTCTTACTACGAATCTCTCTCA 60
Query 61 AC-TTTCTTCCTCAGCTTACGGGAACTTCCACACATATACATCCACAAGAACCCATATCG 119
|| ||| ||||||||||||| || | | || | |||||||||||||||||||
Sbjct 61 ACTTTTTTTCCTCAGCTTAC-GG-A-----A-AC---T---TCCACAAGAACCCATATCG 106
Query 120 AAGATTCATCCTACATATATTTACATGGATCAGTACTCATCCTCTTTGGTCGATACTTCA 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 107 AAGATTCATCCTACATATATTTACATGGATCAGTACTCATCCTCTTTGGTCGATACTTCA 166
Query 180 TTAGATCTCACTATTGGCGTTACTCGTATGCGAGTTGAAGAAGATCCACCGACAAGTGCT 239
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 167 TTAGATCTTACTATCGGCGTTACTCGTATGCGAGTTGAAGAAGATCCACCGACAAGTGCT 226
Query 240 TTGGTGGAAGAATTAAACCGAGTTAGTGCTGAGAACAAGAAGCTCTCGGAGATGCTAACT 299
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 227 TTGGTGGAAGAATTAAAGCGAGTGAGTGCTGAGAACAAGAAGCTCTCGGAGATGCTAACT 286
Query 300 TTGATGTGTGACAACTACAACGTCTTGAGGAAGCAACTTATGGAATATGTTAACAAGAGC 359
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 287 TTGATGTATGACAACTACAACGTCTTGAGGAAGCAACTTATGGAATATGTTAACAAGAGC 346
Query 360 AACATAACCGAGAGGGATCAAATCAGCCCTCCCAAGAAACGCAAATCCCCGGCGAGAGAG 419
|||||||||||||| ||||||||||| |||||||||||||||||||| ||||| ||||||
Sbjct 347 AACATAACCGAGAGAGATCAAATCAGTCCTCCCAAGAAACGCAAATCTCCGGCCAGAGAG 406
Query 420 GACGCATTCAGCTGC-GCGGTTATTGGCGGAGTGTCGGAGAGTAGCTCAACGGATCAAGA 478
||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 407 GACGCATTCAGCT-CGGCGGTTATTGGTGGAGTGTCGGAGAGTAGCTCAACGGATCAAGA 465
Query 479 TGAGTATTTGTGTAAGAAGCAGAGAGAAGAGACTGTCGTGAAGGAGAAAGTCTCAAGGGT 538
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||
Sbjct 466 TGAGTATTTGTGTAAGAAGCAGAGAGAAGAGACTGTTGTGAAGGAAAAAGTCTCAAGAGT 525
Query 539 CTATTACAAGACCGAAGCTTCTGACACTACCCTCGTTGTGAAAGATGGGTATCAATGGAG 598
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 526 CTATTACAAGACCGAAGCTTCTGACACCACCCTTGTTGTGAAAGATGGGTATCAATGGAG 585
Query 599 GAAATATGGACAGAAAGTGACTAGAGACAATCCATCTCCAAGAGCTTACTTCAAATGTGC 658
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 586 GAAATATGGACAGAAGGTGACTAGAGACAATCCATCTCCAAGAGCTTACTTCAAATGTGC 645
Query 659 TTGTGCTCCAAGCTGTTCTGTCAAAAAGAAGGTTCAGAGAAGTGTGGAGGATCAGTCCGT 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 646 TTGTGCTCCAAGCTGTTCTGTCAAAAAGAAGGTTCAGAGAAGTGTGGAGGATCAGTCCGT 705
Query 719 GTTAGTTGCAACTTATGAGGGTGAACACAACCATCCAATGCCATCGCAGATCGATTCAAA 778
||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 706 GTTGGTTGCGACTTATGAGGGTGAACATAACCATCCAATGCCATCGCAGATCGATTCAAA 765
Query 779 CAATGGCTTAAACCGCCACATCTCTCATGGTGGTTCAGCTTCAACACCCGTTGCAGCAAA 838
|||||||||||||||| ||||||||||||||||||||||||||||||||| || || ||
Sbjct 766 CAATGGCTTAAACCGCTACATCTCTCATGGTGGTTCAGCTTCAACACCCGCAGCGGCCAA 825
Query 839 CAGAAGAAGTAGCTTGACTGTGCCGGTGACTACCGTAGATATGATTGAATCGAAGAAAGT 898
|| || |||||||||||||| ||| ||||||||||||||| ||| |||||| ||||||||
Sbjct 826 CAAAAAAAGTAGCTTGACTGAGCCAGTGACTACCGTAGATTTGACTGAATCAAAGAAAGT 885
Query 899 GACGAGCCCAACGTCAAGAATCGATTTTCCCCAAGTTCAGAAACTTTTGGTGGAGCAAAT 958
|||||||||||| |||||||| ||||||||| ||||||| ||||||||||||||||||||
Sbjct 886 GACGAGCCCAACATCAAGAATAGATTTTCCCGAAGTTCATAAACTTTTGGTGGAGCAAAT 945
Query 959 GGCTTCTTCCTTAACCAAAGATCCTAACTTTACAGCAGCTTTAGCAGCAGCTGTTACCGG 1018
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 946 GGCTTCTTCCTTGACCAAAGATCCTAACTTTACAGCAGCTTTAGCAGCAGCTGTTACCGG 1005
Query 1019 AAAATTGTATCAACAGAATCATACCGAGAAATAGTTTAGCTTCAAATTCCGTTAGAGTTT 1078
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 1006 AAAATTGTATCAACAGAATCATACCGAGAAATAGTTTAGTTTCAAATTCCGTTAGTGTTT 1065
Query 1079 TTAGATTTGAATTTGTCATGAGTAAGAGAAAGAGAGTAGATTATAATCCATTGTGATACT 1138
||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1066 TTAGATT-GAAATTGTCATGAGTTAGAGAAAGAGAGTAGATTATAATCCATTGTGATACT 1124
Query 1139 GAAAATGTAACATGTAATCGTTTTTCATACAATCTCCAATACATT 1183
|||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 1125 GAAAATGTAACATGTAATCGTTTT-CATTCAATCTCCAATACATT 1168
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44603812890
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5