BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G80850.1
Length=1392
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477160 jgi|Araly1|477160|fgenesh2_kg.2__2290__AT1G80850.1 1711 0.0
> Ahg477160 jgi|Araly1|477160|fgenesh2_kg.2__2290__AT1G80850.1
Length=1306
Score = 1711 bits (926), Expect = 0.0
Identities = 1216/1343 (91%), Gaps = 71/1343 (5%)
Strand=Plus/Plus
Query 1 TGAATGTGTAAACCTTA--C--TCATTCCCGTGATCCTACTTTGGGATTTCGCTAGAAGA 56
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 1 TGAATGTGTAAACCTTACTCATTCATTCCCGTGATCCTACTTTGGGATTTCGCTAGAAGA 60
Query 57 A----G-----TTTAGGTGACGAC-C-TTA-ATTTAAGTTTGTAAATGCAGGTCCTTTCT 104
| | ||||||||||||| | ||| |||||| |||||||||||||||||||||
Sbjct 61 ATTGGGAAATTTTTAGGTGACGACTCATTACTTTTAAGATTGTAAATGCAGGTCCTTTCT 120
Query 105 TTCTAGGGTTTATCGAAATTGGTGTAAATCTTTTGGAATTGGTTTGAGATTTTTTCTTTT 164
|||||||||||||| | | ||||||||||||| |||||||||
Sbjct 121 TTCTAGGGTTTATC---------G---A--------AATTGGTTTGAGA--TTTTCTTTT 158
Query 165 GGGG-AATTGCAATTCATTAGT---C--G--TCGTGATCCAGTGTGT-TTTTAAGTGAAG 215
|||| ||||||||||| ||||| | | ||||||||||| |||| ||||||||||||
Sbjct 159 GGGGAAATTGCAATTCCTTAGTCGACGTGACTCGTGATCCAGAGTGTGTTTTAAGTGAAG 218
Query 216 TAAGGCATTTTCGATATTCGGAGACTTTTAGGTCAATGTCGGCTCCACCGCGAGTTCGGT 275
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 219 -AAGGCATTTTCGAAAACCGGAGACTTTTAGGTCAATGTCGGCTCCACCGCGAGTTCGGT 277
Query 276 CTGTGGATTCATCCGACCGAGAATTCAGATCAGTTCTTGGTCCCGCCGGCAATAAGCTGC 335
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 278 CTGTGGATTCATCCGACCGAGAATTCAGATCAGTTCTTGGTCCCGCCGGTAATAAGCTGC 337
Query 336 AGCAGAAACCGTTGTCAAAGCCGGTGAAGAAGCCTGTGGCTGAGAAAACCAAAAACCTAA 395
|||||||||| || |||||||||| |||||||| ||||||||||||||||
Sbjct 338 AGCAGAAACC---GT---------TGAAGAAGCCGGTGGCTGATAAAACCAAAAACCTAA 385
Query 396 CCTTTACGGAGAAAATGCCGCAATGCTCGCCTCTAAGCCCTCCAATTCTGAGACGTAATG 455
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||| || |
Sbjct 386 CCTTTACGAAGAAAATGCCGCAATGCTCGCCTCTAAGCCCTTCAATTCTGAGACGAAACG 445
Query 456 GTATTTCGATGACTGCTTCGTATTCTTCAGATGCGTCGTCTTCTTGCGAGTCGTCGCCGT 515
|||| |||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 446 GTATCTCGATGACCGCTTCGTATTCTTCAGATGCGTCATCTTCGTGCGAGTCGTCGCCGT 505
Query 516 TAAGTATGACGTCTACTTCGAGTGGAAAGAGGGTTTTGCGGCGAAGTGGGTCAGTTTCTT 575
||||| || |||| |||||||| || ||||||| ||||||||||||||||||| ||||||
Sbjct 506 TAAGTGTGGCGTCGACTTCGAGCGGGAAGAGGGCTTTGCGGCGAAGTGGGTCACTTTCTT 565
Query 576 CTTCCTCTTCACTGAGAAGAAATCTGACGGAGGAGAGAGATGAGAAGGCTAGTGATTGCT 635
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 566 CTTCCTCTTCCCTGAGAAGAAATCTGACGGAGGAGAGAGATGAGAAGGCTAGTGATTGCT 625
Query 636 TCTGTGACGGTCGTAAAAGATGCGCTTGGATCACCCCTAAATCTGATCAATGTTACATTG 695
||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 626 TCTCTGACGGTCGTAAAAGATGCGCTTGGATCACGCCTAAATCTGACCAATGTTACATTT 685
Query 696 CCTTCCATGATGA-AGAATGGGGAGTTCCTGTCCATGATGACAAGAGACTTTTCGAGTTA 754
| ||||||||| | ||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 686 CTTTCCATGAT-ACTGAATGGGGAGTTCCTGTCCATGACGACAAGAGACTATTCGAGTTG 744
Query 755 TTAAGCTTGTCTGGTGCTCTTGCTGAACTATCTTGGAAAGACATTCTTTCCAAAAGACAA 814
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 745 TTAAGCTTGTCTGGTGCTCTTGCTGAACTATCTTGGAAAGACATTCTTTCCAAAAGACAA 804
Query 815 CTATTCAGGGAGGTTTTCATGGACTTTGATCCAATTGCAATATCTGAATTAACAAATAAA 874
|||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 805 TTATTCAGGGAAGTTTTCATGGACTTTGATCCAATTGCAATATCTGAACTAACTAATAAG 864
Query 875 AAGATAACATCCCCTGAGATTGCTGCCACCACGTTACTATCAGAGCAAAAGCTACGGTCA 934
|||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||
Sbjct 865 AAGATAACATCCCCTGAGATTGCTACCACTACGTTACTATCAGAGCAAAAGTTACGGTCA 924
Query 935 ATCCTCGAGAATGCTAACCAAGTTTGCAAGATAATAGGTGCATTTGGATCATTTGACAAG 994
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 925 ATCCTCGAGAATGCTAACCAAGTTTGCAAGATAATAGTTGAATTTGGATCATTTGACAAG 984
Query 995 TACATTTGGAACTTCGTTAACCAGAAACCTACTCAGAGCCAATTCCGGTACCCACGTCAA 1054
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 985 TACATTTGGAACTTCGTTAACCAGAAACCTACTCAAAGCCAATTCCGGTACCCACGCCAA 1044
Query 1055 GTCCCTGTGAAGACTTCGAAAGCCGAGTTGATAAGCAAAGATCTTGTACGCAGAGGTTTT 1114
||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||| |||
Sbjct 1045 GTCCCTGTGAAGACTTCCAAAGCCGAGTTGATAAGTAAAGATCTAGTACGCAGAGGCTTT 1104
Query 1115 CGCAGTGTAAGTCCAACGGTTATTTACTCGTTCATGCAAACAGCTGGTCTCACAAACGAC 1174
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1105 CGCAGTGTCAGTCCAACGGTTATTTACTCATTCATGCAAACAGCTGGTCTCACAAACGAC 1164
Query 1175 CATCTCACTTGCTGCTTCAGACACCATGACTGCATGACAAAGGACGAGACTGGTAATTAA 1234
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1165 CATCTCACTTGCTGCTTCAGACACCATGACTGCATGACAAAAGACGAGACTGGTAATTAA 1224
Query 1235 AGAAAAACCAAGAGAGAATAGTTTTAACTCTGTGCTGCTTAGGATG--------CTGTTG 1286
|||||||||||||||||||||||| ||| ||||||||||||||||| ||||||
Sbjct 1225 AGAAAAACCAAGAGAGAATAGTTT-AACACTGTGCTGCTTAGGATGATGGTTTGCTGTTG 1283
Query 1287 TGCTGTGTTTGCATTTGTACAGA 1309
||||||||||| |||||||||||
Sbjct 1284 TGCTGTGTTTGTATTTGTACAGA 1306
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52031274670
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5