BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G80860.2

Length=681
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg477159 jgi|Araly1|477159|fgenesh2_kg.2__2289__AT1G80860.1         854    0.0  


> Ahg477159 jgi|Araly1|477159|fgenesh2_kg.2__2289__AT1G80860.1
Length=721

 Score =  854 bits (462),  Expect = 0.0
 Identities = 533/567 (94%), Gaps = 5/567 (1%)
 Strand=Plus/Plus

Query  3    aaaaaaaGAAAGCGAAATGGGATTATTGGCCGCGATCGGAGTTCTGTTGCCATTTCCGTT  62
            |||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  1    AAAAAACGTAAGCGAAATGGGATTATTGGCCGCGATCGGAGTTCTGTTGCCATTCCCGTT  60

Query  63   CTACTGGTGGCTGTGGACGAATGCTCAGTCATGGGTCAATCTCTGCGGCCGAGAAAGAGA  122
             ||||||||||| ||||| ||| |||||||||||||||||||||||||||||| ||||||
Sbjct  61   TTACTGGTGGCTATGGACAAATCCTCAGTCATGGGTCAATCTCTGCGGCCGAGGAAGAGA  120

Query  123  CCCATCGACGGTAATGGCACGTGTTTCTCACGTGCTCAAGGCTGCTCAActcctttctct  182
            |||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||
Sbjct  121  CCCATCGACGGTAATGGCGCGTGTATCTCACGTGCTCAAGGCTGCTCAACTCCTCTCTCT  180

Query  183  cttctccgttgcttctctctcctggccgcctccgctctacttctggcctctcATGGCCTT  242
            ||| ||||| ||||||||||||| |  |||||||||||||||||||||||||||||||||
Sbjct  181  CTTTTCCGTCGCTTCTCTCTCCT-G--GCCTCCGCTCTACTTCTGGCCTCTCATGGCCTT  237

Query  243  TGGCCAGTTTCTCAACTTCAGGGTATACCAATTGTTAGGTGAAGCTGGGACTTATTACGG  302
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  238  TGGCCAGTTTCTCAACTTCAGGGTATATCAATTGTTAGGTGAAGCTGGGACTTATTACGG  297

Query  303  TGTTCGATTCGGGAAGAACATACCATGGGTTACAGAGTTCCCATTTGGAGTCATTAGAGA  362
            |||||||||||||||||||||||| ||||||||||||||||||| |||||| || |||||
Sbjct  298  TGTTCGATTCGGGAAGAACATACCGTGGGTTACAGAGTTCCCATATGGAGTTATCAGAGA  357

Query  363  TCCACAGTATGTTGGGAGTATCATGTCTCTATTGGCATGCCTCTCTTGGGTTCCATTTC-  421
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| 
Sbjct  358  TCCACAGTATGTTGGGAGTATCATGTCTCTATTGGCATGCCTCTCTTGGGTTCC-TTTCC  416

Query  422  AATACATTCTCCTCTGGTCTCTCGGTTATGTTTTCATGATGTTTCTCGAGTCAAAGGAGG  481
            |||||||||||||||||||||||||||||||||||||||||||||| || ||||| || |
Sbjct  417  AATACATTCTCCTCTGGTCTCTCGGTTATGTTTTCATGATGTTTCTGGAATCAAAAGAAG  476

Query  482  ATCCAAATGCTCGTGCCAAATCCATCTCATGATTCCTAAGCATAACCCACTAGTCTTAGA  541
            |||||| |||||||||||||||| ||||||||||||||||||||||||||| || |||||
Sbjct  477  ATCCAAGTGCTCGTGCCAAATCCCTCTCATGATTCCTAAGCATAACCCACTTGTGTTAGA  536

Query  542  AGAGCTCAACTCCCATGAACGTCAGGT  568
            |||||  |||||||| |||||||||||
Sbjct  537  AGAGCAAAACTCCCAGGAACGTCAGGT  563



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25008633552


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5