BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G80870.1
Length=2251
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477157 jgi|Araly1|477157|fgenesh2_kg.2__2287__AT1G80870.1 3241 0.0
> Ahg477157 jgi|Araly1|477157|fgenesh2_kg.2__2287__AT1G80870.1
Length=2228
Score = 3241 bits (1755), Expect = 0.0
Identities = 2088/2242 (93%), Gaps = 50/2242 (2%)
Strand=Plus/Plus
Query 1 ATGCCTTCAAGACCAAATCCAACCCGACCAAAGCTATTCCAT-AACAGAACAAAAACTCT 59
|||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||
Sbjct 1 ATGCCTTCAAGACCAAATCCAATCCGACCAAAGCTATT-CATCAACAGAACAAAAACTCT 59
Query 60 CTTCTTGATTCTTACAATTTCATCCTCTCTTGTAATCTTCTTCGCAATTCTCTACTTCAT 119
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 60 CTTCTTGATTCTTACAATCTCATCTTCTCTTGTAATCTTCTTCGCAATTCTCTACTTCAT 119
Query 120 CTATCACCTCTGGATTTCTCTTCTGAACCGTTCCAGAACCATCCCTTTCGACGTTGCTGC 179
|||||||||||||||||||||||| ||||| || || |||||||||||||||||||||||
Sbjct 120 CTATCACCTCTGGATTTCTCTTCTTAACCGCTCGAGGACCATCCCTTTCGACGTTGCTGC 179
Query 180 TGCATCGCCATTAAAGCTCCAGCTTTTCACTTACAAAGAGCTTAAACTAGCAACAAACGA 239
||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 180 TGCGTCGCCATTAAAGCTCCAGCTTTTCACTTACAAAGAGCTCAAACTAGCGACAAACGA 239
Query 240 TTTCGACGAATCCAATGTGATTGGTAAAGGTGGCTCTGGTACTGTGTTCCGAGGCATTAC 299
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||
Sbjct 240 TTTCGACGAATCCAATGTGATTGGTAAAGGCGGCTCTGGTACTGTGTTCAGAGGCATCAC 299
Query 300 ACGAGACGGCAAGCTTTTCGCGGTTAAGAGACTCGATAACCTCTCTATACAAACAGAGAC 359
| |||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 300 AAGAGAGGGCAAGCTTTTCGCGGTTAAGAGACTCGATAATCTCTCTATTCAAACAGAGAC 359
Query 360 CGAGTTTCAGAACGAGTTACAGATTCTTGGCGGGTTAAAATCGTCTTTTTTGGTTACCCT 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CGAGTTTCAGAACGAGTTACAGATTCTTGGCGGGTTAAAATCGTCTTTTTTGGTTACCCT 419
Query 420 TTTAGGTTATTGCGTCGAGAAGAATCACAGGTTCTTGATTTATGAGTATATGCCAAACAA 479
|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 420 TTTAGGTTATTGCGTCGAGAAGCATCACAGGTTCTTGATTTACGAGTATATGCCAAACAA 479
Query 480 GAGCCTTCAAGAGCTTCTCTTTAACGAAGATGGCGATTCGTGCTTGAATTGGGAAAGGAG 539
||| ||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||
Sbjct 480 GAGTCTTCAAGAGCTTCTCTTCAACGAAGATGGAGATTCGTGCTTGCATTGGGAAAGGAG 539
Query 540 ATTCGGTATCATCCTCGATGTAGCGAAAGCTCTCGAATTTATGCATTTCGGGTGTGACCC 599
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 ATTCAGTATCCTCCTCGATGTAGCGAAAGCTCTCGAATTTATGCATTTCGGGTGTGACCC 599
Query 600 ACCAGTGATTCATGGAGATATCAAGCCTAGTAATGTTCTTCTTGATTCTGAATTTAGGGC 659
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 600 ACCAGTGATTCATGGAGATATCAAGCCTAGTAATGTTCTTCTGGATACTGAATTTAGGGC 659
Query 660 GAAGATTTCGGATTTTGGGTTGTCTAGGGTTAAAGTGGAGGGAGGTTATGGGGTTGATTT 719
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 660 AAAGATTTCGGATTTTGGTTTGTCTAGGGTTAAAGTGGAGGGAGGTTATGGGGTTGATTT 719
Query 720 GTTTAGCCAAGAACTTTCTGGGAATTTTGGAGGAGAGAGCACTCCTCAGACCGCCATTGG 779
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 720 GTTCAGCCAAGAACTTTCTGGGAATTTTGGAGGAGAGAGCACTCCTCAGACGGCCATTGG 779
Query 780 TACTCCAACGCATCATGAGGTTGATTTTGCTCTTGCTCTACAAGCTTCTTCGTCTTCCAA 839
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TACTCCAACGCATCCTGAGGTTGATTTTGCTCTTGCTCTACAAGCTTCTTCGTCTTCCAA 839
Query 840 GAACAGTAGAACAAGCCGTAACATTAAGGAAATGAGTCTGAATTCGATGAGTTTAGCAAT 899
||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 840 GAACAGTAGAACAAGTCGTAACATTAAGGGAATGAATCTGAATTCGATGAGTTTAGCAAT 899
Query 900 GGATGGTGAGACAAAAGG---A-A------A-A-GA---GG-T--TTC---A---AATGA 935
||| |||||| ||||||| | | | | || || | ||| | ||| |
Sbjct 900 GGAGGGTGAGGCAAAAGGAAAAGAGGTTTCACACGATGGGGATGATTCTAAAGTCAATCA 959
Query 936 TGTTGTGTTGTCATGTGAGGATCATGAGTTTGATCAGGGCAAGGAGATGAATTTATTGAG 995
|||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||
Sbjct 960 TGTTGTGTTGTCATGTGAGGATCATGAGTTTGATCAGGGCAATGAGATGAA--T-TTGAG 1016
Query 996 TCCGAATTCGGTTCTTGATTTGGGGAAGGGGTCTAAGCAATGGGGGAGAGATTGGTGGTG 1055
|| ||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1017 CCCTAATTCGGTTCTTGATTTGGGGAAGGGGTCGAAACAATGGGGGAGAGATTGGTGGTG 1076
Query 1056 GAAGCAAGAAGGGAGTGGTGAATTGTGTAGTAAAGATTATGTTAGGGAATGGATAGGGAG 1115
|||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1077 GAAGCAAGAAGGTAGTGGTGAATTGTGTAGTAAAGACTATGTCAGGGAATGGATAGGGAG 1136
Query 1116 TCAGATTGACACTGCTAATCCGGATTGGGATGATGACAAGAAGGTCATCACTACTCCTGA 1175
|||||||||||| || |||||||||||||||||||| |||||| ||| ||||||||||||
Sbjct 1137 TCAGATTGACACGGCGAATCCGGATTGGGATGATGAGAAGAAGATCAGCACTACTCCTGA 1196
Query 1176 GCTGGGAGTTTCGACTAGGACAATCGATAAAGCAGAACATCGAGATGAGTCTGGTTTGAA 1235
| |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1197 GGTGGGAGTTTCCACTAGGACAATCGATAAAGCAGAAGATCGAGATGAGTCTGGTTTGAA 1256
Query 1236 TGAATCTAGGTTTGACACTC-TGgaagagaagtttgcaaaagaagagatcagcg-agagg 1293
|||||||||||||||||||| ||| |||||||||||| ||||||||||||| || | |||
Sbjct 1257 TGAATCTAGGTTTGACACTCTTGG-AGAGAAGTTTGCGAAAGAAGAGATCAACGAAAAGG 1315
Query 1294 aagaacaa-aagatcgaaaaacaagaagaagaagCATAGGAATATGGAGGAATGGTGGAA 1352
|| || || || | ||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1316 -CCAAGAAGAA-ATTG--AAA-AAGAAGAAGAAGCACAGGAATATGGAGGAATGGTGGAA 1370
Query 1353 AGAGGAAGAGCATCAAGAAGAGATGAATAACAAAAAGAAGATTGGAGTTTTGAGAATCAA 1412
|||||||||||||||||| ||||||| |||||||||||||||| || || ||||||||||
Sbjct 1371 AGAGGAAGAGCATCAAGATGAGATGATTAACAAAAAGAAGATTAGAATTCTGAGAATCAA 1430
Query 1413 GTTCAAGAATCATTTGAAATTCCCGCATTTTCGTTACTGTTTCCGACAAAAGGGTGAAAA 1472
||||||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1431 GTTCAAGAATCGTTTGAAATTCCCACATTTTCGTTACTGTTTCCGTCAAAAGGGTGAAAA 1490
Query 1473 CAGCGTGCACGACCGAGAAGGAGAAGCAGCGGGAGAATTTAGCTTCAGAAGAGGATGGAG 1532
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1491 CAGCGTGCATGACCGAGAAGGAGAAGCAGCGGGAGAATTTAGCTTCAGAAGAGGATGGAG 1550
Query 1533 AAGGAAAAGCAATAGCAGCAGCaagaagaagaagaagaaCAACAATGGATCGATGGGGAG 1592
|||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||
Sbjct 1551 AAGGAAAAGCAATAGCAGCAGCAAGAAGAAGAAGAA---CAACAATAGATCAATGGGGAA 1607
Query 1593 TGAGATGTGGAGTGGTGATTTGTTCAGCCGTGAATTAAGCAGCACGACGA-G--TATGAG 1649
|||||||||||| ||||||||||||||||| ||||||||||||||||||| | ||||||
Sbjct 1608 TGAGATGTGGAGCGGTGATTTGTTCAGCCGCGAATTAAGCAGCACGACGACGAGTATGAG 1667
Query 1650 AGGAACATTGTGTTACATAGCACCGGAATATGGAGGCGGTTGCTGTTACTTGATGGAGAA 1709
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1668 AGGAACATTGTGTTATATAGCACCGGAATATGGAGGCGGTTGCTGTTACTTGATGGAGAA 1727
Query 1710 AGGAGATATCTACAGCTTTGGAGTACTGATTCTAGTGATAGTCTCGGGTAGGAGGCCTTT 1769
||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1728 AGGCGATATCTACAGCTTTGGAGTACTGATTCTAGTGATAATCTCGGGTAGGAGGCCTTT 1787
Query 1770 ACACGTCCTTGCATCGCCGATGAAGCTTGAAAAAGCAAATTTGGTGAGCTGGTGTAGGCA 1829
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1788 ACACGTCCTTGCATCACCGATGAAGCTTGAAAAAGCGAATTTGGTGAGCTGGTGTAGGCA 1847
Query 1830 ACTGGCTCAGTCAGGGAACGTTCTTGAGCTGGTCGACGAGAAATTGAAGGATGGGTATAA 1889
| |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1848 ATTGGCTCAGTCAGGGAATGTTCTTGAGCTGGTCGATGAGAAATTGAAGGATGGGTATAA 1907
Query 1890 CAAGGAAGAAGCAGGATTGTGCATTAACTTGGCTTTGGCTTGTCTGCAGAAAGCTCCAGA 1949
||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1908 CAAAGAAGAAGCAGGATTGTGCATTAACTTGGCTTTGGCTTGTCTGCAGAAAGCACCTGA 1967
Query 1950 GTTACGGCCTGATGTTAGTGAAGTTGTGAGAATCTTGAGAGGGGAAATGGACATTTCCTC 2009
| |||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 1968 GCTACGGCCTCATGTTAGTGAAATTGTGAGAATCTTGAGAGGGGAAATGGATATTTCCTC 2027
Query 2010 CACTGCTTTCGAGTTTTCTCCATCGCC-ACCGGGAAAAGTTTACGGCAGTAGATCGAAGC 2068
|||||||||||||||||||||||||| || || |||| |||| ||||||||||| ||||
Sbjct 2028 GACTGCTTTCGAGTTTTCTCCATCGCCTAC-GGCAAAATTTTATGGCAGTAGATCAAAGC 2086
Query 2069 GGAGAAGCTAAAACAGGGCAATGC--AG-AGTA-GTAGTTCGAGGTTTGATATGATCTTT 2124
||||||| |||||||||| ||||| || |||| ||||||||||||||||| ||||||||
Sbjct 2087 GGAGAAGTTAAAACAGGGAAATGCGGAGTAGTACGTAGTTCGAGGTTTGATCTGATCTTT 2146
Query 2125 TCATTTTCGAAATTGTTGGATGTAACTTGAAAGAGTTTTAGCTTTTGAGaattgtattat 2184
|||||| ||||||||||||||||||||||| |||||||| ||||||||||| ||||||||
Sbjct 2147 TCATTTACGAAATTGTTGGATGTAACTTGAGAGAGTTTTCGCTTTTGAGAACTGTATTAT 2206
Query 2185 gttgtaatttttgtaaactata 2206
|||||||| |||||||||||||
Sbjct 2207 GTTGTAATGTTTGTAAACTATA 2228
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84750795125
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5