BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G80880.1
Length=1623
Score E
Sequences producing significant alignments: (Bits) Value
Ahg909618 jgi|Araly1|909618|Al_scaffold_0002_2699 2231 0.0
> Ahg909618 jgi|Araly1|909618|Al_scaffold_0002_2699
Length=1626
Score = 2231 bits (1208), Expect = 0.0
Identities = 1478/1607 (92%), Gaps = 23/1607 (1%)
Strand=Plus/Plus
Query 24 TAGGAAACTCGCGCGAAC-GCCACAATGG-CGGATTGTTCAGCATCAATCTCTGCTACGT 81
||||| ||| ||||||| | |||||||| | |||||| || || |||| ||| ||||||
Sbjct 9 TAGGAGACTAACGCGAACTG-CACAATGGTC-GATTGTGCAACAACAATATCTTCTACGT 66
Query 82 CGTGCAGTGTCGACGTC---GTTTT-CGAGCTCAGT-TTCCCAAAATCATTCCTTCTCTT 136
| ||||||||| || ||||| | | |||| | || |||||| || |||||| |||
Sbjct 67 --T-TAGTGTCGACTTCATTGTTTTCCCA-CTCA-TCTTTCCAAAACCACTCCTTCCCTT 121
Query 137 CAGCATTTCATCGAGCAGGTCATGTGCATTCTCAAGTTTTAAGCTATCTCCCACATTTTG 196
||||||||||||||||||||| ||||||||||||| | |||||||| |||||| |||||
Sbjct 122 CAGCATTTCATCGAGCAGGTCTTGTGCATTCTCAAATCCTAAGCTATGTCCCACGTTTTG 181
Query 197 CCTCTTCTAATCGCTTCTCCAC-CAAAACCATCTCCGAAACATTTGATATCAACTTAACA 255
||| || || | ||||||||| | ||| |||||||| | |||||| ||||| | |
Sbjct 182 TCTCCTCCAACCACTTCTCCACTC-AAATCATCTCCGCCATGTTTGATGTCAAC--CA-A 237
Query 256 GCATTGGCTCCGTTAGAAAAGGGTCTGATTGATTTAATCAGACAGGTCTCTGAGCTGGAG 315
|| ||||||||||| | | |||||||||||||||| |||||||| ||||||||||| |||
Sbjct 238 GCCTTGGCTCCGTTGGTACAGGGTCTGATTGATTTGATCAGACATGTCTCTGAGCTAGAG 297
Query 316 TCAGAGGCGGATGCCATGGCTTCTCTGGAGGACTCATCATTTGATCTAAATCATGATTCT 375
|||||||||||||||||||| ||||| ||||| ||||| ||||||||||||||||| |||
Sbjct 298 TCAGAGGCGGATGCCATGGCATCTCTAGAGGAATCATCCTTTGATCTAAATCATGACTCT 357
Query 376 TTCTACTCCTTAATCTGGGAATTAAGAGATGAATGGAGGCTTGCCTTTCTAGCATTCAAA 435
|||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 358 TTCTACTCTTTAATCTGGGAATTAAGAGAGGAATGGAGGCTTGCCTTCCTAGCATTCAAA 417
Query 436 TGGGGAGAGAAACGCGGCTGTGATGATCAGAAATCTTGTGATTTGATGATCTGGGTGTTG 495
||||||||||||||||||||||||||||||| | |||||||||||||| ||||||| |||
Sbjct 418 TGGGGAGAGAAACGCGGCTGTGATGATCAGAGAGCTTGTGATTTGATGGTCTGGGTCTTG 477
Query 496 GGTAATCATCAAAAGTTCAACATTGCTTGGTGTTTGATCCGTGATATGTTTAATGTTTCA 555
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 478 GGTAATCATCAAAAGTTCAACATTGCTTGGCGTTTGATCCGTGATATGTTTCATGTTTCA 537
Query 556 AAGGATACTAGAAAGGCCATGTTTCTCATGATGGACAGATATGCTGCTGCTAATGATACT 615
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 AAAGATACTAGAAAGGCCATGTTTCTCATGATGGACAGATATGCTGCTGCTAATGATACT 597
Query 616 AGCCAAGCTATTCGGACATTTGATATTATGGATAAGTTTAAACACACTCCTTATGATGAA 675
| ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 598 ATCCAAGCTATTCGGACATTTGATATTATGGATAAGTTTAAACACACCCCTGATGATGAA 657
Query 676 GCATTTCAAGGATTGCTATGTGCATTGTGTAGACATGGCCACATTGAAAAAGCTGAAGAG 735
|||||||||||| |||||| ||| |||||||||||||| ||||||||||||||| |||||
Sbjct 658 GCATTTCAAGGACTGCTATATGCCTTGTGTAGACATGGGCACATTGAAAAAGCTCAAGAG 717
Query 736 TTCATGCTTGCAAGCAAAAAGCTCTTTCCGGTGGATGTTGAGGGATTCAACGTAATTCTT 795
|||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||
Sbjct 718 TTCATGCTTGCAAGCAAAAAGCTCTTTCCGGTCGATGTTGAGGGATTCAACATCATTCTT 777
Query 796 AATGGTTGGTGTAACATTTGGACTGATGTGACTGAAGCAAAGAGGATTTGGCGAGAGATG 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 AATGGTTGGTGTAACATTTGGACTGATGTGACTGAAGCAAAGAGGATTTGGCGAGAGATG 837
Query 856 GGGAATTACTGTATCACGCCTAACAAGGACTCTTACAGTCACATGATCTCTTGCTTCTCT 915
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 838 GGGAATTACTGTATCACGCCTAACAAGGACTCTTTCAGTCACATGATCTCTTGCTTCTCT 897
Query 916 AAAGTTGGGAACCTTTTTGATTCTCTCAGGCTATACGATGAAATGAAGAAACGGGGATTG 975
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 898 AAAGTTGGGAACCTTTTTGATTCTCTCAGGCTATACGATGAGATGAAGAAACGGGGATTG 957
Query 976 GCTCCAGGGATTGAAGTTTACAATTCCTTGGTTTATGTGTTGACCCGTGAGGATTGCTTT 1035
||||||||||||| |||||||||||| ||| |||||||||||||||||||| ||||||||
Sbjct 958 GCTCCAGGGATTGTAGTTTACAATTCTTTGCTTTATGTGTTGACCCGTGAGAATTGCTTT 1017
Query 1036 GATGAAGCTATGAAGCTTATGAAAAAGTTGAACGAGGAAGGATTAAAGCCAGATTCAGTG 1095
||||||||||||||||| || ||||| || |||||||||||||||| |||| ||||||
Sbjct 1018 CATGAAGCTATGAAGCTTTTGGAAAAGATGGACGAGGAAGGATTAAAACCAGGTTCAGTC 1077
Query 1096 ACCTACAACTCGATGATACGCCCCCTTTGTGAGGCTGGAAAGCTGGACGTAGCCAGGAAT 1155
||||||||||| |||||||| ||||||||||||||||||||||||||| | ||||| |||
Sbjct 1078 ACCTACAACTCAATGATACGTCCCCTTTGTGAGGCTGGAAAGCTGGACCTTGCCAGCAAT 1137
Query 1156 GTATTGGCAACCATGATTAGTGAGAACCTTAGTCCAACAGTTGATACATTTCATGCATTC 1215
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 GTATTGGCAACCATGATAAGTGAGAACCTTAGTCCAACAGTTGATACATTTCATGCATTC 1197
Query 1216 CTTGAGGCTGTAAATTTCGAGA-AAACTTTAGAGGTTTTAGGCCAAATGAAGATCTCTGA 1274
|||||||||||||||||||| | ||| ||| ||||||||||||||||||||| | ||||
Sbjct 1198 CTTGAGGCTGTAAATTTCGATACAAA-TTTGGAGGTTTTAGGCCAAATGAAGGTTTCTGG 1256
Query 1275 TTTAGGTCCTACAGAAGAGACCTTTCTTCTTATTCTTGGAAAATTGTTCAAGGGAAAGCA 1334
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 TTTAGGTCCTACAGAAGACACCTTTCTTCTTATTCTTGGAAAATTGTTCAAGGGAAAGCA 1316
Query 1335 ACCAGAAAATGCTTTGAAGATCTGGGCAGAAATGGATCGTTTTGAGATAGTGGCTAATCC 1394
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1317 ACCAGAAAATGCTTTGAAGATCTGGGCAGAAATGGATCGTTTCGAGATAGTGGCTAATCC 1376
Query 1395 TGCTCTTTACTTGGCTACAATACAGGGCCTTTTGTCATGTGGGTGGCTTGAAAAGGCCAG 1454
||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 1377 TGCTCTTTACTTGGCTACAGTACAGGGCCTCTTGTCATGTGGGTGGCTTGAAAAGGCCAG 1436
Query 1455 AGAGATCTATTCAGAGATGAAATCAAAGGGGTTCGTAGGAAATCCTATGCTCCAGAAACT 1514
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1437 AGAGATCTATTCAGAGATGAAATCAAAGGGGTTCCCAGGAAATCCTATGCTCCAGAAACT 1496
Query 1515 TCTTGAGGAGCAAAAGGTGAAGGGGGTCAGAAAAAGCAAGAGGAT-GAATCTTCAAAAAG 1573
||| ||||||||||||||||||||| ||||||||||||||||||| || |||||||||||
Sbjct 1497 TCTGGAGGAGCAAAAGGTGAAGGGGATCAGAAAAAGCAAGAGGATAGA-TCTTCAAAAAG 1555
Query 1574 TTGGTTCTCAGGAAGGCTACAAGGGTCAACGATCAGTAGACAGAAAA 1620
||||||||| || |||||| |||||||| |||||| || ||| ||||
Sbjct 1556 TTGGTTCTCGGGGAGGCTATAAGGGTCAGCGATCAATATACAAAAAA 1602
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60830121265
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5