BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G80890.1 Length=661 Score E Sequences producing significant alignments: (Bits) Value Ahg909617 jgi|Araly1|909617|Al_scaffold_0002_2698 396 1e-109 > Ahg909617 jgi|Araly1|909617|Al_scaffold_0002_2698 Length=240 Score = 396 bits (214), Expect = 1e-109 Identities = 234/243 (96%), Gaps = 3/243 (1%) Strand=Plus/Plus Query 84 ATGGGAAATGAGAGCAAGAGCAATTTGGGAGGAGGAGGAATTAGGGCAAAGATGGAGCAC 143 |||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||| Sbjct 1 ATGGGAAATGAGAGCAAGAGCAATTT--G-GGAGGAGGATTTAGGGCAAAGATGGAGCAC 57 Query 144 TATGTCTACAGTGGGGAGAAGAAGCACGTTTTGGCTGGGATCGGGATTATCTCCATCATC 203 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 58 TATGTCTACAGTGGGGAGAAGAAGCACGTTTTGGCTGGGATCGGGATTATCTCCATCATC 117 Query 204 TTCGGAATCCCTTGGTATCTAATGAATCAAGGATCAAAGCATCGTTCTCACCAAGATTAC 263 ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 118 TTCGGAATCCCCTGGTACCTAATGAATCAAGGATCAAAGCATCGTTCTCACCAAGATTAC 177 Query 264 TTGGAAAAAGCTGATAAAGCTCGAAAAGCTCGTCTCTCATCATCTTCATCCTCGGATAAG 323 ||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||| Sbjct 178 TTGGAAAAAGCCGATCAAGCTCGAAAAGCTCGTCTCTCGTCATCTTCATCCTCGGATAAG 237 Query 324 TAG 326 ||| Sbjct 238 TAG 240 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 24246175212 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5