BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G80890.1
Length=661
Score E
Sequences producing significant alignments: (Bits) Value
Ahg909617 jgi|Araly1|909617|Al_scaffold_0002_2698 396 1e-109
> Ahg909617 jgi|Araly1|909617|Al_scaffold_0002_2698
Length=240
Score = 396 bits (214), Expect = 1e-109
Identities = 234/243 (96%), Gaps = 3/243 (1%)
Strand=Plus/Plus
Query 84 ATGGGAAATGAGAGCAAGAGCAATTTGGGAGGAGGAGGAATTAGGGCAAAGATGGAGCAC 143
|||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||
Sbjct 1 ATGGGAAATGAGAGCAAGAGCAATTT--G-GGAGGAGGATTTAGGGCAAAGATGGAGCAC 57
Query 144 TATGTCTACAGTGGGGAGAAGAAGCACGTTTTGGCTGGGATCGGGATTATCTCCATCATC 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 58 TATGTCTACAGTGGGGAGAAGAAGCACGTTTTGGCTGGGATCGGGATTATCTCCATCATC 117
Query 204 TTCGGAATCCCTTGGTATCTAATGAATCAAGGATCAAAGCATCGTTCTCACCAAGATTAC 263
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 TTCGGAATCCCCTGGTACCTAATGAATCAAGGATCAAAGCATCGTTCTCACCAAGATTAC 177
Query 264 TTGGAAAAAGCTGATAAAGCTCGAAAAGCTCGTCTCTCATCATCTTCATCCTCGGATAAG 323
||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 178 TTGGAAAAAGCCGATCAAGCTCGAAAAGCTCGTCTCTCGTCATCTTCATCCTCGGATAAG 237
Query 324 TAG 326
|||
Sbjct 238 TAG 240
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24246175212
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5