BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G80900.1
Length=1614
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927405 jgi|Araly1|927405|scaffold_202966.1 2298 0.0
Ahg471800 jgi|Araly1|471800|fgenesh2_kg.1__1754__AT1G16010.1 1399 0.0
> Ahg927405 jgi|Araly1|927405|scaffold_202966.1
Length=1373
Score = 2298 bits (1244), Expect = 0.0
Identities = 1332/1375 (97%), Gaps = 4/1375 (0%)
Strand=Plus/Plus
Query 124 GTATCTGGAGATTGGCAACAATGTCTGAACTCAAAGAGCGTTTGCTTCCTCCAAGACCTG 183
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GTATCTGGAGATTGCCAACAATGTCTGAACTCAAAGAGCGTTTGCTTCCTCCAAGACCTG 60
Query 184 CTTCGGCTATTAACCTTAGAGGTGATGCAGGCTCTCGTCCTTCTCCT-TCAGGGAGACAA 242
|||| ||||| ||||||||||| |||||||| |||||||||||| || ||||||||||||
Sbjct 61 CTTCTGCTATAAACCTTAGAGGGGATGCAGGTTCTCGTCCTTCT-CTATCAGGGAGACAA 119
Query 243 CCACTCCTTGGAGTTGATGTTTTGGGTCTCAAGAAGCGTGGACAAGGCCTTAAGTCGTGG 302
|||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 120 CCACTCCTTGGAATTGATGTTTTGGGTCTCAAGAAGCGTGGACAAGGGCTTAAGTCGTGG 179
Query 303 ATTCGTGTTGATACTTCTGCCAATTCTCAGGTCATTGAGGTTGATAAGTTCACTATGATG 362
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 ATTCGTGTTGATACTTTTGCCAATTCTCAGGTCATTGAGGTTGATAAGTTCACTATGATG 239
Query 363 CGTAGATGTGATTTACCAGCACGGGATTTAAGGCTGCTTGATCCTTTGTTTGTGTATCCG 422
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 240 CGCAGATGTGATTTACCAGCACGTGATTTAAGGCTGCTTGATCCTTTGTTTGTGTATCCG 299
Query 423 TCAACTATTCTTGGTAGAGAGAAGGCTATTGTTGTTAACTTAGAGCAGATCCGTTGTATT 482
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TCAACTATTCTTGGCAGAGAGAAGGCTATTGTTGTTAACTTAGAGCAGATCCGTTGTATT 359
Query 483 ATTACTGCGGATGAGGTTTTGCTCTTGAATTCCCTTGACAACTATGTGCTTCGCTATGTT 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 ATTACTGCGGATGAGGTTTTGCTCTTGAATTCCCTTGACAACTATGTGCTTCGCTATGTT 419
Query 543 GTTGAGCTGCAGCAGAGACTAAAGGCAAGTTCTGTTACTGAGGTTTGGAATCAGGACAGT 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GTTGAGCTGCAGCAGAGACTAAAGGCAAGTTCTGTTACTGAGGTTTGGAATCAGGACACA 479
Query 603 CTCGAATTGAGCAGGAGGAGGAGTAGGAGTTTAGACAATGTGCTTCAGAACTCATCCCCT 662
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 480 CTCGAATTGAGCAGGAGGAGGAGTAGGAGTTTAGACAATGTGTTTCAGAACTCATCCCCT 539
Query 663 GATTATTTACCTTTCGAGTTCAGGGCTCTTGAAGTTGCACTTGAAGCTGCTTGTACCTTC 722
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 540 GATTATTTACCTTTCGAGTTCAGGGCTCTTGAAGTTGCCCTTGAAGCTGCTTGCACCTTC 599
Query 723 CTTGATTCCCAGGCTTCAGAGTTAGAGATTGAGGCATACCCATTATTGGATGAGCTTACC 782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 CTTGATTCCCAGGCTTCAGAGTTAGAGATTGAGGCATACCCATTATTGGATGAGCTTACC 659
Query 783 TCAAAGATCAGTACTCTAAACTTGGAGCGTGCTCGTAGACTAAAGAGCAGACTTGTAGCA 842
||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 660 TCAAAGATCAGTACTTTAAACTTGGAGCGTGCACGTAGACTAAAGAGCAGACTTGTAGCA 719
Query 843 TTGACGAGACGAGTTCAGAAGGTTCGGGATGAGATTGAACAGCTAATGGACGATGATGGG 902
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TTGACGAGAAGAGTTCAGAAGGTTCGGGATGAGATTGAACAGCTAATGGACGATGATGGG 779
Query 903 GATATGGCAGAAATGTATCTAACAGAGAAGAAGAAGAGAATGGAAGGATCTTTATATGGT 962
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 GATATGGCAGAAATGTATCTAACAGAGAAGAAGAAGAGAATGGAAGGATCTTTATATGGT 839
Query 963 GATCAATCTTTACCTGTTTATCGAACAAATGATTGTTTTTCTCTGTCTGCGCCAGTTTCT 1022
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 840 GATCAATCTTTACCTGTTTACCGAACAAATGATTGTTTTTCTCTGTCTGCACCAGTTTCT 899
Query 1023 CCTGTTTCTTCTCCTCCTGAGTCCCGTAGACTTGAGAAAAGCTTGAGCATTGTAAGGAGC 1082
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 900 CCTGTTTCTTCTCCTCCCGAGTCCCGTAGACTCGAGAAAAGCTTGAGCATTGTAAGGAGC 959
Query 1083 CGGCATGACAGTGCTAGGAGCTCAGAAGACGCAACCGAGAATATAGAGGAGCTAGAGATG 1142
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 960 CGGCATGACAGTGCTAAGAGCTCAGAAGGCGCAACCGAGAATATAGAGGAGCTAGAGATG 1019
Query 1143 TTGCTGGAAGCATACTTTGTTGTCATTGACAGCACTCTCAACAAGCTAACCTCGTTAAAG 1202
|||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||
Sbjct 1020 TTGCTGGAAGCATACTTTGTTGTCATCGATAGCACTCTCAACAAGCTTACCTCGTTAAAG 1079
Query 1203 GAGTACATCGATGATACCGAAGATTTCATCAACATTCAATTGGATAACGTACGGAATCAG 1262
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1080 GAATACATCGATGATACCGAGGATTTCATCAACATTCAATTGGATAACGTACGGAATCAG 1139
Query 1263 CTGATCCAATTCGAGCTGCTGCTAACTACTGCCACATTCGTTGTAGCCATCTTCGGGGTT 1322
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1140 CTGATCCAATTCGACCTGCTGCTAACTACTGCGACATTCGTTGTAGCCATCTTCGGGGTT 1199
Query 1323 GTAGCCGGGATCTTTGGGATGAATTTTGAGATAGACTTCTTTGAAAAGCCTGGTGCTTTC 1382
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 1200 GTAGCCGGGATCTTTGGGATGAATTTTGAAATAGACTTCTTTGAACAGCCTGGTGCTTTC 1259
Query 1383 AAATGGGTTTT-AGCCATTACTGGAGTGTGTGGCCTTGTTGTATTTTTGGCATTCCTCTG 1441
||||||||| | | ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1260 AAATGGGTTCTGA-CCATTACTGGAGTGTGTGGCCTTGTTGTATTTTTGGCATTCGTCTG 1318
Query 1442 GTACTACAAACGTAGAAGACTCATGCCTCTGTGAAGACATAACTACCCTGACACG 1496
|| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 1319 GTTCTACAAACGTAGAAGACTCATGCCTCTGTGAAGACATTACTGCCCTGACACG 1373
> Ahg471800 jgi|Araly1|471800|fgenesh2_kg.1__1754__AT1G16010.1
Length=1738
Score = 1399 bits (757), Expect = 0.0
Identities = 1169/1368 (85%), Gaps = 27/1368 (2%)
Strand=Plus/Plus
Query 124 GTATCTGGAGATTGGCAACAATGTCTGAACTCAAAGAGCGTTTGCTTCCTCCAAGACCTG 183
||||||| | || |||||||||||||| || |||||||| ||||||||||||||||||
Sbjct 301 GTATCTGAATTTTTGCAACAATGTCTGAGCTAAAAGAGCGCCTGCTTCCTCCAAGACCTG 360
Query 184 CTTCGGCTATTAACCTTAGAGGTGATGCAGGCTCTCGTCCTTCT-CCTTCAGGGAGA-CA 241
|||| ||||| ||||| |||| || ||| | | |||| |||||| || || || ||| |
Sbjct 361 CTTCAGCTATGAACCTCAGAGATGCTGCTGTCACTCGGCCTTCTGCC-TCTGGAAGAGC- 418
Query 242 ACCACTCCTTGGAGTTGATGTTTTGGGTCTCAAGAAGCGTGGACAAGGCCTTA-AGTCGT 300
||| || |||||||||||||| |||||||| ||||||||||||||||||| || ||| |
Sbjct 419 ACCCCTTCTTGGAGTTGATGTCTTGGGTCTGAAGAAGCGTGGACAAGGCC-TACGGTCTT 477
Query 301 GGATTCGTGTTGATACTTCTGCCAATTCTCAGGTCATTGAGGTTGATAAGTTCACTATGA 360
||||||||||||||||||||| |||| |||||||||| ||||| || |||||||||||||
Sbjct 478 GGATTCGTGTTGATACTTCTGGCAATACTCAGGTCATGGAGGTCGACAAGTTCACTATGA 537
Query 361 TGCGTAGATGTGATTTACCAGCACGGGATTTAAGGCTGCTTGATCCTTTGTTTGTGTATC 420
||||||||||||| || || || || |||||||||||||||||||| || ||||||||||
Sbjct 538 TGCGTAGATGTGACTTGCCCGCCCGTGATTTAAGGCTGCTTGATCCCTTATTTGTGTATC 597
Query 421 CGTCAACTATTCTTGGTAGAGAGAAGGCTATTGTTGTTAACTTAGAGCAGATCCGTTGTA 480
| || ||||| || || |||| |||||||||||||| ||||||||||| ||||||||||
Sbjct 598 CCTCTACTATCCTCGGCCGAGAAAAGGCTATTGTTGTGAACTTAGAGCAAATCCGTTGTA 657
Query 481 TTATTACTGCGGATGAGGTTTTGCTCTTGAATTCCCTTGACAACTATGTGCTTCGCTATG 540
|||||||||| ||||| ||| ||||| ||||||||||||||||||| ||||| || ||||
Sbjct 658 TTATTACTGCAGATGAAGTTCTGCTCCTGAATTCCCTTGACAACTACGTGCTGCGGTATG 717
Query 541 TTGTTGAGCTGCAGCAGAGACTAAAGGCAAGTTCTGTTA-CTGAGGTTTGGAATCAGGAC 599
|||||||| ||||||||||||||||| | ||| || || |||| | ||| | |||||
Sbjct 718 TTGTTGAGTTGCAGCAGAGACTAAAGACTAGTAGTG-TAGGTGAGATGTGGCAGCAGGAA 776
Query 600 AGT-CTCGAATTGAGCAGGAGGAGGAGTAGGAGTTTAGACAATG-TGCTTCAGAACTCAT 657
| | | | | ||||| || |||||||| |||||||| ||||||| | || |||| ||||
Sbjct 777 AATGC-CCAGTTGAGTAGAAGGAGGAGCAGGAGTTTTGACAATGCT-TTTGAGAATTCAT 834
Query 658 CCCCTGATTATTTACCTTTCGAGTTCAGGGCTCTTGAAGTTGCACTTGAAGCTGCTTGTA 717
||||||||||||||||||| ||||| || ||||||||| | || ||||||||||||||||
Sbjct 835 CCCCTGATTATTTACCTTTTGAGTTTAGAGCTCTTGAAATAGCCCTTGAAGCTGCTTGTA 894
Query 718 CCTTCCTTGATTCCCAGGCTTCAGAGTTAGAGATTGAGGCATACCCATTATTGGATGAGC 777
| || || |||||||||||||||||||| ||||||||||||||||| ||||| |||||||
Sbjct 895 CGTTTCTCGATTCCCAGGCTTCAGAGTTGGAGATTGAGGCATACCCGTTATTAGATGAGC 954
Query 778 TTACCTCAAAGATCAGTACTCTAAACTTGGAGCGTGCT-CGTAGACTAAAGAGCAGACTT 836
||||||||||||||||||| |||||||||||||||| | |||||||| |||||||| ||
Sbjct 955 TTACCTCAAAGATCAGTACACTAAACTTGGAGCGTG-TGCGTAGACTGAAGAGCAGGCTG 1013
Query 837 GTAGCATTGACGAGACGAGTTCAGAAGGTTCGGGATGAGATTGAACAGCTAATGGACGAT 896
|||||| |||| ||| |||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1014 GTAGCACTGACAAGAAGAGTTCAGAAGGTTCGGGATGAGATTGAGCAGCTAATGGATGAT 1073
Query 897 GATGGGGATATGGCAGAAATGTATCTAACAGAGAAGAAGAAGAGAATGGAAGGATCTTTA 956
||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 1074 GATGGAGATATGGCAGAAATGTATCTAACAGAGAAGAAGAGGAGAATGGAAGGATCTCTG 1133
Query 957 TATGGTGATCAATCTTTACCTGT-TTATC-GAACAAATGATTGTTTTTCTCTGTCTGCGC 1014
|| ||||| ||||| || || ||| | | |||||||| || | ||| | ||||| |
Sbjct 1134 TACGGTGACCAATCCTTGT-TGGGTTA-CAGGTCAAATGATGGTCTATCTGTTTCTGCAC 1191
Query 1015 CAGTTTCTCCTGTTTCTTCTCCTCCTGAGTCCCGTAGACTTGAGAAAAGCTTGAGCATTG 1074
|||| ||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||
Sbjct 1192 CAGTCTCTCCTGTTTCTTCTCCTCCTGATTCCCGAAGACTTGATAAAAGCTTGAGCATTG 1251
Query 1075 TAAGGAGCCGGCATGACAGTGCTAGGAGCTCAGAAGACGCAACCGAGAATATAGAGGAGC 1134
||||| |||||||||||||| ||||| || |||| | ||| ||||||||||| ||||
Sbjct 1252 CGAGGAGTCGGCATGACAGTGCAAGGAGTTCGGAAGGTGTAACAGAGAATATAGAAGAGC 1311
Query 1135 TAGAGATGTTGCTGGAAGCATACTTTGTTGTCATTGACAGCACTCTCAACAAGCTAACCT 1194
||||||||||||||||||| |||||||| |||||||| |||||||| |||||| | || |
Sbjct 1312 TAGAGATGTTGCTGGAAGCTTACTTTGTCGTCATTGATAGCACTCTAAACAAGTTGACAT 1371
Query 1195 CGTTAAAGGAGTACATCGATGATACCGAAGATTTCATCAACATTCAATTGGATAACGTAC 1254
|||||||||||||||| ||||| || ||||||||||| ||||||||| ||||||| || |
Sbjct 1372 CGTTAAAGGAGTACATTGATGACACTGAAGATTTCATTAACATTCAACTGGATAATGTGC 1431
Query 1255 GGAATCAGCTGATCCAATTCGAGCTGCTGCTAACTACTGCCACATTCGTTGTAGCCATCT 1314
|||||||| |||||||||||||| |||| || || ||||| || |||||||||||||| |
Sbjct 1432 GGAATCAGTTGATCCAATTCGAGTTGCTTCTCACGACTGCAACTTTCGTTGTAGCCATAT 1491
Query 1315 TCGGGGTTGTAGCCGGGATCTTTGGGATGAATTTTGAGATAGACTTCTTTGAAA-AGCCT 1373
| ||||| || || ||||||||||||||||| ||||||||||||||||| || ||||
Sbjct 1492 TTGGGGTCGTTGCTGGGATCTTTGGGATGAACTTTGAGATAGACTTCTTC-AACCAGCCA 1550
Query 1374 GGTGCTTTCAAATGGGTT-TTAGCCATTACTGGAGTGTGTGGCCTTGTTGTATTTTTGGC 1432
|| || |||| |||||| ||| ||||||||||| |||||| ||||| |||||| |||
Sbjct 1551 GGAGCATTCAGATGGGTACTTATA-ATTACTGGAGTATGTGGCTTTGTTATATTTTCGGC 1609
Query 1433 ATTCCTCTGGTACTACAAACGTA--GAAGACTCATGCCTCTGTGAAGA 1478
|||| |||||| || ||| ||| |||||||||||||||| | ||||
Sbjct 1610 ATTCGTCTGGTTCTTCAA--GTACAGAAGACTCATGCCTCTAT-AAGA 1654
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60487309060
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5