BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G80910.1
Length=1927
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927404 jgi|Araly1|927404|scaffold_202965.1 2512 0.0
> Ahg927404 jgi|Araly1|927404|scaffold_202965.1
Length=1534
Score = 2512 bits (1360), Expect = 0.0
Identities = 1476/1533 (96%), Gaps = 4/1533 (0%)
Strand=Plus/Plus
Query 207 ATGAGCTCTTAGAAGCTATGGGAATGGCGTCCATGAGCTCTGGTACTGAAAGCCTTCGTC 266
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 4 ATGAGCTCTTAGAAGCTATGGGAATGGCGTCCATGAGCTCTGGTAGTGAAAGCCTTCGTC 63
Query 267 TTTGCGTGTTTGACTTAAGAAGAGGCCAACACGAAGGACAGGAACTGGACAAGATCTTGT 326
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 64 TTTGCGTGTTTGACTTAAGAAGAGGCCAACACGAAGGACAAGAACTCGACAAGATCTTGT 123
Query 327 TCTTCTATCCTCCTGATCTAACCTTCTCCACTCAGCTATCGGTTATAGGTCTCAGTGAAG 386
|||||||||||||||||||||||||||| ||||||||||| ||||| || ||||| ||||
Sbjct 124 TCTTCTATCCTCCTGATCTAACCTTCTCGACTCAGCTATCCGTTATCGGGCTCAGCGAAG 183
Query 387 GGCTTATCACGTTCACGAGACTTTTCTCCCCGGAGGCAGCTTGTGAGGTAATTGAAGCAG 446
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 184 GGCTTATCACGTTCACCAGACTTTTCTCCCCGGAGGCAGCTTGTGAGGTAATTGAAGCAG 243
Query 447 AGAGACATTCCCATGTTTTCTATGAGGCCGAGCCCGATATCTGGATGGTCATGATTGTAG 506
|||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 244 AGAGACATTCCCATGTTTTCTATGAGGCCGAGCCCGATATATGGATGGTCATGGTTGTAG 303
Query 507 AGAAAAATAAGGAGATTGAAGCTGTATGGAGGATTGATGCATTGCGGAGAGTGCTTAAGG 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 AGAAAAATAAGGAGATTGAAGCTGTATGGAGGATTGATGCATTGCGGAGAGTGCTTAAGG 363
Query 567 AAGTGCACTCTCTCTTTGTTATGTTTCAAGGGTCAATTAGGGCATTGCTTGAGAAAGAAC 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 364 AAGTGCACTCTCTCTTTGTTATGTTTCAAGGGTCAATTAGGGCATTGCTTGAGAAAGAAC 423
Query 627 CAACTGGAGGACTTGTAAGATCGCACTTGTATCCATTCATCACAGACTATTTAAATGATC 686
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 424 CAACTGGAGGACTTATAAGATCGCACTTGTATCCATTCATCACAGACTATTTAAATGATC 483
Query 687 TTTTCGTTGGGAAAAAACAACAGTTACCTTCCTTCCGTGACACTTTGAAAGAGCGTGGAA 746
|||| ||||| || ||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 484 TTTTTGTTGGTAAGAAACATCAGTTACCTTCCTTCCGTGAAACTTTGAAAGAGCGTGGAA 543
Query 747 CAGTTCAGATGCTAACTTTAGCTAGAGATGCGGCACTTGAAGTTCAGTCTCTCGTCGGAG 806
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 544 CAGTTCAGATGCTAACTTTAGCAAGAGATGCAGCACTTGAAGTTCAGTCTCTCGTCGGAG 603
Query 807 TGCTAGATTCATGTGCTGGGACCGTTCGATGCCACTCTGTGATTCTATTTCATGATCTAC 866
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 604 TGCTAGATTCATGTGCTGGGACTGTTCGATGCCACTCTGTGATTCTATTTCATGATCTAC 663
Query 867 TGGTGTCAACAACTCTCTCACCTGATGATACCGTCGACTTGTTTGCATTTTCTGTCATGA 926
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 664 TGGTGTCAACAACTCTCTCACCTGATGATACCGTCGACTTGTTTGCATTTTCTGTCATGA 723
Query 927 GATTAACCACAAACGCGCTATCATCTGGCACAAGTTCCTGGTCATATCTACGCAAAGGAT 986
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 724 GATTGACCACAAACGCGCTATCCTCTGGCACAAGTTCCTGGTCATATCTACGCAAGGGAT 783
Query 987 CCG-GTTCACCTCAAATATCTTCTAGATCTAC-TACGGTGCCCCCTCTTGGTTCAGGTGG 1044
||| | ||||||||||||||||||||||||| | |||||| ||||||||||||||||||
Sbjct 784 CCGTGA-CACCTCAAATATCTTCTAGATCTACCT-CGGTGCTCCCTCTTGGTTCAGGTGG 841
Query 1045 TACATTGCCTTCGGGAAATGGTAGTAGCACAGGTCGTGTTATTAGACCTTTGCAGCACGA 1104
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 842 TACATTGCCTTCAGGAAATGGTAGTAGCACAGGTCGTGTTATTAGACCCTTGCAGCACGA 901
Query 1105 TAAGTGGTCGAAGGGGAAAGATGGGTTTCTTGTAACTGATATTTGGGGTTTAGATGCCAC 1164
|||||||| ||| |||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 902 TAAGTGGTTGAAAGGGAAAGACGGGTTTCTTGTAACTGATATTTGGGGTATAGATGCCAC 961
Query 1165 CCCGACAATTTTGATACAGAAGACACAGGAAAGTTTTTACCTTTTGACTTATCAGTACAA 1224
|||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||
Sbjct 962 ACCGACAATTTTGATACAGAAGACACAGGAAAGATTTTACCTTTTGACATATCAATACAA 1021
Query 1225 GAGTCTCACCTTGGTTCTTCTCGTGCCTATCGCTGCAATTGTTAATGGAGAGCTAGACAT 1284
||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1022 AAGTCTGACCTTGGTTCTTCTCGTGCCTACCGCTGCAATTGTTAATGGAGAGCTAGACAT 1081
Query 1285 CTCATTCGTGAAGCAGCAAGTTATTGAAAACGCATCGACCAAAATCTTGAAAGTCGAAGA 1344
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 1082 CTCATTCGTGAAGCAGCAAGTTATTGAAAACGCATCGGCAAAAATCTTGAAAGTCGAAGA 1141
Query 1345 GAAGCTATCGAAAGGGTGGGGCGGTGAGAATGCTTACCATGTAAGCGGTTACCGTTACTT 1404
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1142 GAAGCTATCGAAAGGGTGGGGCGGTGAGAACGCTTACCATGTAAGCGGTTACCGTTACTT 1201
Query 1405 ACTAGTTGATAATGACATGGAAGTTTCCAGAGCTTCTCCACCAGGAAAGGTAGCAACACT 1464
|||| |||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 1202 ACTAATTGATAATGACATGGAAGTTTCCAGAGCTTCTCCGGCAGGAAAGGTAGCAACTCT 1261
Query 1465 AGCAAAGGAGTCTTTGCTTGCACTAAACAAGCTAAGGGAAGAAGTGGATACAGaaaaaaa 1524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1262 AGCAAAGGAGTCTTTGCTTGCACTAAACAAGCTAAGGGAAGAAGTGGATACAGAAAAGAG 1321
Query 1525 CCGCTCGAAGCAAGAGAAAGACATGGAAATATGCATTCGAGCGAAGAACAACACATGGGT 1584
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1322 CCGCTCGAAGCAAGAGAAAGACATGGAAATATGCATTCGAGCGAAGAACAACACGTGGGT 1381
Query 1585 CATCGCGCGTCTAAACAGAGGTAAAGAGCTTTACATGGCTTTAGAGAAAGCAAGTGAAAC 1644
|||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 1382 CATCGCGCGTCTAAACAGAGGTAAAGAGGTTTACATGGGTTTAGAGAAAGCAAGTGAAAC 1441
Query 1645 TCTTCTTGATGCTACAGACTCTGTCCAAAGATTCAGCAACAGGTACTGCAGCGGGGCATT 1704
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1442 TCTTCTGGATGCTACAGACTCTGTCCAAAGATTCAGCAACAGGTACTGCAGCGGAGCATT 1501
Query 1705 CCCCATGGATTAGATTCTGCAATTGTTTGTTTT 1737
| |||||||||||||||||||||||||||||||
Sbjct 1502 CTCCATGGATTAGATTCTGCAATTGTTTGTTTT 1534
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72409555745
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5