BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G80920.1
Length=852
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477153 jgi|Araly1|477153|fgenesh2_kg.2__2283__AT1G80920.1 970 0.0
> Ahg477153 jgi|Araly1|477153|fgenesh2_kg.2__2283__AT1G80920.1
Length=685
Score = 970 bits (525), Expect = 0.0
Identities = 611/649 (94%), Gaps = 20/649 (3%)
Strand=Plus/Plus
Query 89 AAATCATAATCTTCTCTTTGATTCCATCTTGTGAACCACCGGCATAAGAAAATATGACAA 148
||||||||||||||||||||||||||||||||||||| |||| | | |||| |||||||
Sbjct 55 AAATCATAATCTTCTCTTTGATTCCATCTTGTGAACCGCCGG-A-GATAAAA-ATGACAA 111
Query 149 TTGCTTTAACGATCGGAGGAAACGGGTTT-TCGGGTCTACCAGGATCGTCGTTTTCTTCA 207
||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||| |||
Sbjct 112 TTGCTTTAACGATCGGAGGAAAC-GGTTTCTCGGGTCTACCCGGATCGTCGTTTTCATCA 170
Query 208 TCATCTTCGTCGTTTCGATTAAAAAACAGCAGAAGAAAGAACACGAAGATGCTCAACAGA 267
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 171 TCATCTTCATCGTTTCGATTGAAAAACAGCAGAAGAAAGAACACGAAGATGCTCAACAGA 230
Query 268 TCAAAAGTCGTTTGTTCTTCTTCATCTTCTGTAATGGATCCGTATAAGACTCTTAAGATC 327
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 231 TCAAAAGTCGTTTGTTCTTCTTCATCTTCTGTAATGGATCCGTATAAAACCCTTAAGATC 290
Query 328 CGACCCGATTCATCTGAATACGAGGTCAAGAAAGCTTTCAGACAACTCGCTAAAAAGTAT 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 291 CGACCCGATTCATCTGAATACGAGGTCAAGAAAGCTTTCAGACAACTCGCTAAAAAGTAT 350
Query 388 CATCCTGATGTTTGTAGAGGAAGCAATTGTGGGGTACAGTTTCAGACAATTAACGAAGCT 447
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 351 CATCCTGATGTTTGTAGAGGAAGCAATTGTGGGGTTCAGTTTCAGACAATTAACGAAGCT 410
Query 448 TACGATATTGTGTTGAAGCAAATTAAA-AATCAGATGGAAGGGACGGAGGAATTTGAGCC 506
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 411 TACGATATTGTGTTGAAGCAAAT-AAAGAATCAGATGGAAGGGACGGAGGAATTTGAGCC 469
Query 507 GTTCGATGTATACGACGAGGGATTGAACGGAATGAATGATCCAGATTGCGACACGTGGGA 566
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 470 GTTCGATGTATATGACGAGGGATTGAACGGAATGAATGATCCAGATTGCGACACGTGGGA 529
Query 567 AGAATGGATGGGATGGGAGGGAGCAGGAACCCGTGATTACTCCTCTCACGTTAATCCTTA 626
|||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||
Sbjct 530 GGAATGGATGGGATGGGAGGGAGCAGGGACCCGTGATTACTCGTCTCATGTTAATCCTTA 589
Query 627 CGCTTGATAAACGAATGATTTCACTAATTAATTTCGAAAGAAATCATCCAAATGTGTATA 686
|||||||||| | |||||||||||||||||||||||||| | | | | | |||
Sbjct 590 CGCTTGATAACC-AATGATTTCACTAATTAATTTCGAAA-A--TG-T--A--T----ATA 636
Query 687 AATAACAATCAGAGAGAGACTAAAAGCACAACAATGTAAATAAGTGAAA 735
|||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 637 AATAACAATCAGAGAGAGACTAAAAGCACAACAATGTAAATAGGTGAAA 685
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31527652359
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5