BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G80930.1
Length=3256
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927402 jgi|Araly1|927402|scaffold_202963.1 4266 0.0
Ahg949547 jgi|Araly1|949547|scaffold_801434.1 1615 0.0
> Ahg927402 jgi|Araly1|927402|scaffold_202963.1
Length=2734
Score = 4266 bits (2310), Expect = 0.0
Identities = 2607/2748 (95%), Gaps = 29/2748 (1%)
Strand=Plus/Plus
Query 192 TTTGTACTACTTTCTCATCCATGGGTAGGCACG-----G-TAGTTCCTCCGACgaagaag 245
||||||||| ||||||||||||||||||||||| | |||||||||||| |||||||
Sbjct 1 TTTGTACTATTTTCTCATCCATGGGTAGGCACGAATACGATAGTTCCTCCGAGGAAGAAG 60
Query 246 agagagttagaagaagggataggagaagacgagagagaagccctgatgttagaagaTCGA 305
|||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 61 AGAGAGCTAGAAGAAGGGATAGGAGAAGACGAGAGAGAAGCCCAGATGTTAGACGATCGA 120
Query 306 GGACTGAGACAGATGATGTTGCTCGTCGTGTTAGGGTTTCTGATGATGAGGACCGTAAGA 365
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 121 GGACGGAGACAGATGATGTTGCTCGTCGTGTTAGGGTTTCTGATGATGAGGACCATAAGA 180
Query 366 GCTCGCGACGAGATCTTGAGATTGGTGGTACTGTCGCTGATGGTGAGGGACGCCGTGGAG 425
|||||||||||||||||||||||| ||| || | ||| || || ||||||||||
Sbjct 181 GCTCGCGACGAGATCTTGAGATTGCTGG---TG--G-TGA----GA-GG-CGCCGTGGAG 228
Query 426 ATAAGGTCAGAAGAAAAGAGACTTCTGATGATGAGGAATTAGCTAGACGGTCGAGAAAGG 485
||||||| ||||||||||||||| ||||||||||||| | || |||||||||||||
Sbjct 229 ATAAGGT---TAGAAAAGAGACTTCTTCTGATGAGGAATTATCCAGGCGGTCGAGAAAGG 285
Query 486 ATCGAAAAGAAGCGAACTCTGGTTCTGAGGATGATAGAGGTAAAAGAATTGAGGTAGATA 545
|||| ||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 286 ATCGGAAAGAAGTAAACTCCGGTTCTGAGGATGATAGAGGTAAAAAAATTGAGGTAGATA 345
Query 546 GTGATGGTGATGGTGAGAGGAGAGTGAATAAGGGGAGAAATACGGATAGAGTTAGAGCTG 605
|||||| ||||||||||||||| |||| |||||||| ||||| |||||||||||||||||
Sbjct 346 GTGATGCTGATGGTGAGAGGAGGGTGAGTAAGGGGAAAAATAAGGATAGAGTTAGAGCTG 405
Query 606 ACACTTCTTCTGATGAAG-A--AGATGATTTGAAGGGGAATAAGAAGGAACCGATGGAGG 662
||||||||||| ||||| | |||||||| |||||||||||| |||||| | |||||||
Sbjct 406 GCACTTCTTCTGGTGAAGAAGCAGATGATTCGAAGGGGAATAAAAAGGAAACTATGGAGG 465
Query 663 TTGATGATGATTACGGTCGGAGAGGAAGGAGAAGAAGCCCCAAAGTCATGGAGAAACAGG 722
|||| || ||||||||| |||| |||||| | |||||||||||||||||||||||||| |
Sbjct 466 TTGAAGAGGATTACGGTAGGAGTGGAAGGCGGAGAAGCCCCAAAGTCATGGAGAAACATG 525
Query 723 GTAGAGAGAGAAGTCATAGGGGTAGTAGAGTCATAGCTGATAAACCTTCTGATGAGGAAG 782
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 526 GTAGAGAGAGAAGTCATAGGGGTAGTAGAGTCATAGCTGATAAACCTTCTGATGAAGAAG 585
Query 783 ATGATAGGCAGAGGAGCAGGGGAGGTAGGCGAGAAAGCCAGAGGAAACGCAGGGATCATC 842
||| ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 586 ATGGTAGGCAGAGGAGCAGGGGAGGTAGGCGTGAAAGCGAGAGGAAACGCAGGGATCATC 645
Query 843 GAGCATCTGACGACGATGAGGAAGGTGAGATTAGGAGTGAGAGAAGAGGAAAAGAGAAGA 902
|||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 646 GAGCATCTGACGACGACGAGGAAGGTGAGATTAGGAGTGAGAGAAAAGGAAAAGAGAGGA 705
Query 903 ATGATAGAGGTAGTGAAGGTCTCTTAAAGAGGGATCGGAGGGAGAGAGACTTGACTGATG 962
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 706 ATGATAGAGGTAATGAAGGTCTCTTAAAGAGGGATCGGAGGGAGAGAGACTTGACTGTTG 765
Query 963 GGCATGAGAATGGGAGTCGGCGTAGGGAAAG-TGAAAGAAAAGATAGGAGTCGGAGGGAC 1021
| || |||||||||||||||||||||| ||| |||||| |||| ||||||||||||||
Sbjct 766 GACACGAGAATGGGAGTCGGCGTAGGG-AAGTTGAAAGGCAAGAAAGGAGTCGGAGGGAT 824
Query 1022 GATGGAGTTAGAGATGAAAAAGAAAGGAGACACAATGATAAATATGATGATAGTCAAAGA 1081
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 825 GATGGAGTTAGAGATGAAAAAGAAAGGAGACACAATTATAGATATGATGATAGTCAAAGA 884
Query 1082 GACAAGTTGAGAAAGGAAGATAGCAGGAAAAGGGAAGAGAAGAAGATTGAGGTTCCAAAG 1141
|||||| ||||||||||||||||||||||||||| | || ||||||||||| ||||||||
Sbjct 885 GACAAGGTGAGAAAGGAAGATAGCAGGAAAAGGG-A-AG-AGAAGATTGAGTTTCCAAAG 941
Query 1142 CCCAAGCTGGCAGAACTCAATCCATCTGAGAACAATGCTATGGCCTTGGGAAAAACAGGA 1201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 942 CCCAAGCTGGCAGAACTCAATCCATCTGAGAACAATGCTATGGCCTTGGGAAAAACAGGA 1001
Query 1202 GGAGTTTATATTCCTCCGTTCAAGCTAGCACGCATGATGAAGGAGGTGGAAGATAAAAGC 1261
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1002 GGAGTTTATATTCCTCCGTTCAAGCTAGCACGCATGATGAAGGAGGTGGAAGATAAGAGC 1061
Query 1262 AGCGTAGAGTATCAACGGCTTACATGGGATGCTCTCCGTAAAAGTATTAATGGGCTCGTC 1321
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1062 AGCGTAGAGTATCAACGGCTTACATGGGATGCTCTCCGTAAAAGTATTAATGGGCTCGTG 1121
Query 1322 AATAAGGTTAATGCAAGCAACATCAAGAACATAATCCCTGAACTGTTTGCTGAAAATCTC 1381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1122 AATAAGGTTAATGCAAGCAACATCAAGAACATAATCCCTGAACTGTTTGCTGAAAATCTC 1181
Query 1382 ATCAGAGGAAGGGGACTTTTCTGCCGTTCATGTATGAAGTCTCAAATGGCATCTCCTGGA 1441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1182 ATCAGAGGAAGGGGACTTTTCTGCCGTTCATGTATGAAGTCTCAAATGGCATCTCCTGGA 1241
Query 1442 TTCACTGACGTCTTTGCAGCTTTAGTCGCTGTTATTAACGCCAAATTCCCTGAAGTTGCT 1501
|||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1242 TTCACTGATGTCTTTGCAGCCTTAGTCGCTGTTATTAATGCCAAATTCCCTGAAGTTGCT 1301
Query 1502 GAACTTCTATTGAAAAGGGTCGTTTTGCAGCTAAAGAGAGCGTATAAGCGTAACGACAAG 1561
||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 1302 GAACTTCTATTGAAAAGGGTCATTTTGCAGCTAAAGAGAGCGTATAAGCGTAATGACAAG 1361
Query 1562 CCTCAATTGCTTGCTGCTGTAAAATTTATAGCGCATCTAGTAAACCAGCAAGTCGCTGAG 1621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1362 CCTCAATTGCTTGCTGCTGTAAAATTTATAGCGCATCTAGTAAACCAGCAAGTCGCTGAG 1421
Query 1622 GAGATCATAGCACTTGAGTTAGTTACCATACTTCTGGGAGACCCAACTGATGACAGTGTT 1681
||||||||||||||||| |||||| | ||||||||| ||| || ||||||||||||||
Sbjct 1422 GAGATCATAGCACTTGAATTAGTTGCTGTACTTCTGGAAGAGCCGACTGATGACAGTGTC 1481
Query 1682 GAGGTGGCTGTTGGGTTTGTGACGGAATGTGGTGCAATGCTTCAAGACGTTTCACCAAGA 1741
|||||||||||||||||||||| ||| |||||||| ||||||||||||||| |||||| |
Sbjct 1482 GAGGTGGCTGTTGGGTTTGTGAGGGAGTGTGGTGCGATGCTTCAAGACGTTACACCAAAA 1541
Query 1742 GGATTGAATGGGATTTTTGAGAGGTTTCGTGGTATACTGCACGAGGGAGAGATAGATAAG 1801
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1542 GGATTGAATGGGATTTTTGAGCGGTTTCGTGGTATACTGCACGAGGGAGAGATAGATAAG 1601
Query 1802 AGAGTTCAGTATTTGATTGAAAGTCTCTTTGCTACTAGGAAGGCGAAATTTCAGGGACAT 1861
||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 1602 AGAGTTCAGTATTTGATAGAAAGTCTCCATGCTACTAGGAAGGCGAAATTTCAGGGACAT 1661
Query 1862 CCGGCCGTTCGTCCTGAGCTAGATCTTGTTGAAGAAAAATATTCGCATGATCTCTCTCTT 1921
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1662 CCGGCCGTTCGTCCTGAGCTAGATCTTGTTGAAGAAAAATATTCGCACGATCTCTCTCTT 1721
Query 1922 GATCATGAAATTGATCCTGAAACTGCTCTTGATATTTTCAAACCTGATCCTGATTTCGTG 1981
|||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 1722 AATCAAGAAATTGATCCTGAAACTGCTCTTGATGTTTTCAAACCTGATCCTGACTTCGTT 1781
Query 1982 GAGAACGAAAAGAAATATGAGGCGCTGAAGAAAGAGTTACTCGGTGACGAAGAGTCTGAG 2041
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1782 GAGAACGAAAAGAAATATGAGGCGCTGAAGAAAGAGTTACTCGGTGACGAGGAGTCTGAG 1841
Query 2042 GATGAAGATGGCTCTGATGCTAGTTCAGAGGATAACGATGAGGAGGAAGATGAGTCTGAT 2101
||||| ||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||
Sbjct 1842 GATGACGATGGCTCTGATGCTAGTTTAGAAGATAACGATGAGGAGGAAGATGAATCTGAT 1901
Query 2102 GAAGAAGATGAAGAACAAATGAGAATAAGAGACGAAACAGAGACTAATCTTGTTAATCTT 2161
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1902 GAAGAAGATGAAGAACAAATGAGAATAAGAGACGAGACAGAGACTAATCTTGTTAATCTT 1961
Query 2162 AGAAGGACAATCTACCTGACCATAATGTCCAGTGTTGATTTTGAAGAAGCAGGTCACAAA 2221
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1962 AGGAGGACAATCTACCTGACCATAATGTCCAGTGTTGATTTTGAGGAAGCAGGTCACAAA 2021
Query 2222 TTACTTAAAATTAAGCTTGAACCAGGTCAAGAGATGGAACTATGCATAATGCTCCTGGAA 2281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2022 TTACTTAAAATTAAGCTTGAACCAGGTCAAGAGATGGAACTATGCATAATGCTCCTGGAA 2081
Query 2282 TGTTGCTCTCAGGAGAGAACATATCTGCGTTACTATGGATTGTTGGGTCAGCGTTTCTGT 2341
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2082 TGTTGCTCTCAGGAGAGAACTTATCTGCGTTACTATGGATTGTTGGGTCAGCGTTTCTGT 2141
Query 2342 ATGATCAACAAAATTCATCAAGAGAATTTTGAGAAATGCTTTGTTCAGCAGTATTCCATG 2401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2142 ATGATCAACAAAATTCATCAAGAGAATTTTGAGAAATGCTTTGTTCAGCAGTATTCCATG 2201
Query 2402 ATTCACCGTCTTGAGACAAACAAATTGCGTAACGTGGCTAAGTTTTTTGCCCATTTACTG 2461
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2202 ATTCATCGTCTGGAGACAAACAAATTGCGTAACGTGGCTAAGTTTTTTGCCCATTTACTG 2261
Query 2462 GGCACAGATGCTCTCCCCTGGCATGTGCTTGCCTACATTCGATTAACCGAGGAAGACACT 2521
||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 2262 GGCACAGATGCTCTCCCCTGGCATGTGCTTGCCTACATTCGGTTAACCGAGGAGGACACA 2321
Query 2522 ACTTCCTCATCTCGTATCTTCATTAAGATCCTATTCCAGGAATTGTCAGAACACTTGGGG 2581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2322 ACTTCCTCATCTCGTATCTTCATTAAGATCCTATTCCAGGAATTGTCAGAACACTTGGGG 2381
Query 2582 ATTAGGCTGCTTAATGAGAGGCTTCAGGATCCAACAATGCAGGAATCACTTGAATCTATA 2641
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2382 ATTAGGCTGCTTAATGAGAGGCTTCAGGATCCAACAATGCAGGAATCACTTGAATCTATC 2441
Query 2642 TTCCCTAAGGATAATCCAAAGAACACGAGGTTTGCAATCAACTTCTTTACGTCCATTGGT 2701
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 2442 TTCCCTAAGGATAATCCAAAGAACACTAGGTTTGCAATCAACTTCTTTACATCCATTGGT 2501
Query 2702 CTTGGAGGCATCACAGAGAATCTGAGAGAGTATCTGAAGAACATGCCAAGCCTCATCATG 2761
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2502 CTTGGAGGCATCACAGAGAATCTCAGAGAGTATCTGAAGAACATGCCAAGCCTCATCATG 2561
Query 2762 CAACGGCAGAAGCAAGTTGCGGAATCAGAATCAGGATCATCATCTGGATCTGACAGTTCT 2821
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2562 CAACAGCAGAAGCAAGTTGCGGAATCAGAATCAGGATCATCATCTGGATCTGACAGTTCT 2621
Query 2822 GATTCCGAGTCTGAATCTGAGTCAGGCTCATCATCTTCTTCTAGTTCGGATGAAAGCGAC 2881
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2622 GGTTCCGAGTCTGAATCTGAGTCAGACTCATCATCTTCTTCTAGTTCGGATGAAAGCGAC 2681
Query 2882 AGAGAAAAGAGGAAGCGAAGAAGAAGATCATGAAGACTGTTTTGCTTG 2929
||||| |||||||||||||||| |||||| ||||||||||| || |||
Sbjct 2682 AGAGAGAAGAGGAAGCGAAGAAAAAGATCTTGAAGACTGTTCTGTTTG 2729
> Ahg949547 jgi|Araly1|949547|scaffold_801434.1
Length=1858
Score = 1615 bits (874), Expect = 0.0
Identities = 1343/1569 (86%), Gaps = 34/1569 (2%)
Strand=Plus/Plus
Query 1187 TTGGGAAAAAC-AGGAGGAGTTTATATTCCTCCGTTCAAGCTAGCACGCATGATGAAGGA 1245
||||||||| | | | |||||||||||||||||||||||||||||| ||||| |||| ||
Sbjct 207 TTGGGAAAACCTA-GTGGAGTTTATATTCCTCCGTTCAAGCTAGCAAGCATGTTGAATGA 265
Query 1246 GGTGGAAGATAAAAGCAGCGTAGAGTATCAACGGCTTACATGGGATGCTCTCCGTAAAAG 1305
| | ||||||| |||||||||||||||||||| ||||||||||||||| | ||||||||
Sbjct 266 TGAGAAAGATAAGAGCAGCGTAGAGTATCAACGTCTTACATGGGATGCTTTTCGTAAAAG 325
Query 1306 TATTAATGGGCTCGTCAATAAGGTTAATGCAAGCAACATCAAGAACATAATCCCTGAACT 1365
|||||| |||||||| || |||||||| |||| |||||||||||||||||||||||||||
Sbjct 326 TATTAACGGGCTCGTTAACAAGGTTAACGCAAACAACATCAAGAACATAATCCCTGAACT 385
Query 1366 GTTTGCTGAAAATCTCATCAGAGGAAGGGGACTTTTCTGCCGTTCATGTATGAAGTCTCA 1425
||||||||||||||||||||||||||| |||||||| || ||| | ||||| ||||||||
Sbjct 386 GTTTGCTGAAAATCTCATCAGAGGAAGAGGACTTTTTTGTCGTGCTTGTATCAAGTCTCA 445
Query 1426 AATGGCATCTCCTGGATTCACTGACGTCTTTGCAGCTTTAGTCGCTGTTATTAACGCCAA 1485
||||| ||| ||||||||||||||||| |||||||| |||||||| ||||| ||| | ||
Sbjct 446 AATGGAATCACCTGGATTCACTGACGTTTTTGCAGCGTTAGTCGCGGTTATCAACTCTAA 505
Query 1486 ATTCCCTGAAGTTGCTGAACTTCTATTGAAAAGGGTCGTTTTGC-AGCTAAAGAGAGCGT 1544
||||||| |||||||| ||| || ||||||| || |||||| | ||||||||||| |
Sbjct 506 ATTCCCTCAAGTTGCTCTGCTTTTAGTGAAAAGAGTTGTTTTGATA-CTAAAGAGAGCTT 564
Query 1545 ATAAGCGTAACGACAAGCCTCAATTGCTTGCTGCTGTAAAATTTATAGCGCATCTAGTAA 1604
||| ||||||||| |||||||| || ||||||||||| ||||| |||||||| ||||||
Sbjct 565 ATATGCGTAACGATAAGCCTCAGTTTCTTGCTGCTGTTAAATTCGTAGCGCATTTAGTAA 624
Query 1605 ACCAGCAAGTCGCTGAGGAGATCATAGCACTTGAGTTAGTTACCATACTTCTGGGAGACC 1664
|||||||||||||||| |||||||| || |||| ||| | || | ||| ||| | |||
Sbjct 625 ACCAGCAAGTCGCTGATGAGATCATTGCTTTTGAATTACTCACTGTGCTTTTGGAAAACC 684
Query 1665 CAACTGATGACAGTGTTGAGGTGGCTGTTGGGTTTGTGACGGAATGTGGTGCAATGCTTC 1724
| ||||||| ||| || ||| ||||||||| |||||||| || ||||| || |||| |
Sbjct 685 CGACTGATGCCAGAGTAGAGATGGCTGTTGCGTTTGTGATTGAGTGTGGCGCGTTGCTGC 744
Query 1725 AAGACGTTTCACCAAGAGGATTGA-ATGGGATTTTTGAGAGGTTTCGTGGTATACTGCAC 1783
|||||||| |||||| |||||| | |||||||||||||| ||||||| |||||| ||||
Sbjct 745 AAGACGTTGCACCAAAAGGATT-ACATGGGATTTTTGAGCGGTTTCGCGGTATATTGCAT 803
Query 1784 GAGGGAGAGATAGATAAGAGAGTTCAGTATTTGATTGAAAGTCTCTTTGCTACTAGGA-A 1842
|| |||||||||||||||||| |||||| ||||||||| |||||||||||| | ||| |
Sbjct 804 GAAGGAGAGATAGATAAGAGAACTCAGTACTTGATTGAACGTCTCTTTGCTATTGGGAGA 863
Query 1843 GGCGAAATTTCAGGGACATCCGGCCGTTCGTC-CTGAGCTAGATCTTGTTGAAGAAAAAT 1901
| |||||||||||||| |||| || ||||| | ||||||| ||||| || |||||||| |
Sbjct 864 G-CGAAATTTCAGGGATATCCCGCGGTTCG-CGCTGAGCTTGATCTCGTGGAAGAAAAGT 921
Query 1902 ATTCGCATGATCTCTCTCTTGATCATGAAATTGATCCTGAAACTGCTCTTGATATTTTCA 1961
| || |||||| ||||||||||| | ||||||||||||||||||||||||||| ||||||
Sbjct 922 ACTCACATGATGTCTCTCTTGATGAGGAAATTGATCCTGAAACTGCTCTTGATGTTTTCA 981
Query 1962 AACCTGATCCTGATTTCGTGGAGAACGAAAAGAAATATGAGGCGCTGAAGAAAGAGTTAC 2021
||| ||||||||| ||||| || || ||| ||||||| ||||||||||||||||||||||
Sbjct 982 AACTTGATCCTGACTTCGTAGACAAGGAACAGAAATACGAGGCGCTGAAGAAAGAGTTAC 1041
Query 2022 TCGGTGACGAAGAGTCTGAGGATGAAGATGGCT-CTGATGCTAGTTCAGAGGATAACGAT 2080
| ||||| || || || ||||||||||||||| | | ||| || || | || | |
Sbjct 1042 TTGGTGAGGAGGAATCCGAGGATGAAGATGGCGGC-G--GCT-GT---GATGCTA--GTT 1092
Query 2081 GAGGAGGAAGATGAGTCTGATGAAGAAGATGAAGAACAAATGAGAATAAGAGACGAAACA 2140
|| |||| | | | |||| || | |||||| ||||||||||||| || || |||
Sbjct 1093 CAG-AGGAT-A--A--C-GATGCGGA-G--GAAGAAGAAATGAGAATAAGCGATGAGACA 1142
Query 2141 GAGACTAATCTTGTTAATCTTAGAAGGACAATCTACCTGACCATAATGTCCAGTGTTGAT 2200
| ||||||||||||||||||||| |||||||| ||||| ||||| ||||||| || |||
Sbjct 1143 GCGACTAATCTTGTTAATCTTAGGAGGACAATTTACCTAACCATTATGTCCACCGTAGAT 1202
Query 2201 TTTGAAGAAGCAGGTCACAAATTACTTAAAATTAAGCTTGAACCAGGTCAAGAGATGGAA 2260
|| || |||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 1203 TTCGAGGAAGCAGGTCACAAGTTACCTAAAATTAAGCTTGAACCAGGTCAAGAGATGGAA 1262
Query 2261 CTATGCATAATGCTCCTGGAATGTTGCTCTCAGGAGAGAACATATCTGCGTTACTATGGA 2320
||||||||||||||| |||||||||||||||| |||| ||| ||||| | |||||| ||
Sbjct 1263 CTATGCATAATGCTCTTGGAATGTTGCTCTCAAGAGAAAACTTATCTTCCTTACTACGGT 1322
Query 2321 TTGTTGGGTCAGCGTTTCTGTATGATCAACAAA-ATTCATCAAGAGAATTTTGAGAAATG 2379
|||||||||||||||||||||||| |||| ||| || ||||||| |||||| ||||||||
Sbjct 1323 TTGTTGGGTCAGCGTTTCTGTATGCTCAA-AAAGATCCATCAAGCGAATTTCGAGAAATG 1381
Query 2380 CTTTGTTCAGCAGTATTCCATGATTCACCGTCTTGAGACAAACAAATTGCGTAACGTGGC 2439
||||||||| |||||||| |||| ||||||||||||||||| ||| |||| |||||| ||
Sbjct 1382 CTTTGTTCAACAGTATTCAATGAGTCACCGTCTTGAGACAACCAAGTTGCATAACGTTGC 1441
Query 2440 TAAGTTTTTTGCCCATTTACTGGGCACAGATGCTCTCCCCTGGCATGTGCTTGCCTACAT 2499
|| ||||||||| |||||||| ||| |||||||||||| |||||||| |||| ||||||
Sbjct 1442 TACGTTTTTTGCTCATTTACTTTGCAGAGATGCTCTCCCTTGGCATGTTCTTGGCTACAT 1501
Query 2500 TCGATTAACCGAGGAAGACACTACTTCCTCATCTCGTATCTTCATTAAGATCCTATTCCA 2559
||| ||||| || || |||| |||||||| || ||||||||| |||||||||| |||
Sbjct 1502 TCGGTTAACGGAAGACTACACAACTTCCTCGTCGCGTATCTTCGTTAAGATCCTTTTCTT 1561
Query 2560 GGAATTGTCAGAACACTTGGGGATTAGGCTGCTTAATGAGAGGCTTCAGGATCCAACAAT 2619
| |||||||||| |||||||||||| | | |||||||||||||||||||||||||||||
Sbjct 1562 GAAATTGTCAGATGACTTGGGGATTAAGATACTTAATGAGAGGCTTCAGGATCCAACAAT 1621
Query 2620 GCAGGAATCACTTGAATCTATATTCCCTAAGGATAATCCAAAGAACACGAGGTTTGCAAT 2679
| |||| |||||||||||||| |||||||| ||||||||||||||||| || ||||||||
Sbjct 1622 GGAGGAGTCACTTGAATCTATCTTCCCTAAAGATAATCCAAAGAACACTAGATTTGCAAT 1681
Query 2680 CAACTTCTTTACGTCC-ATTGGTCTTGGAGGCATCACAGAGAATCTGAGAGAGTATCTGA 2738
|||||||||||| | | ||||||||||||||||| ||||||||||| ||||||||| |||
Sbjct 1682 CAACTTCTTTAC-TGCTATTGGTCTTGGAGGCATTACAGAGAATCTTAGAGAGTATTTGA 1740
Query 2739 AGAACATGC 2747
|||||||||
Sbjct 1741 AGAACATGC 1749
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 122887903217
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5