BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G80940.1
Length=1246
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477150 jgi|Araly1|477150|fgenesh2_kg.2__2280__AT1G80940.1 1389 0.0
> Ahg477150 jgi|Araly1|477150|fgenesh2_kg.2__2280__AT1G80940.1
Length=1168
Score = 1389 bits (752), Expect = 0.0
Identities = 1037/1163 (89%), Gaps = 66/1163 (6%)
Strand=Plus/Plus
Query 79 AGCTGAAGCACAAAGCAAAAGCATTTGGTAGTCGTAACCAAAACGCCAAATCATTACCGT 138
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 58 AGCTGAAACACAAAGCAAAAGCCTTTGGTAGTCGTAACCAAAACGCCAAATCATTACCGT 117
Query 139 TCAACTGAAATCTAACAGAGAGCCCTCTTTTCTTGGGAA-TTCGATTCCTTGTACGTTAt 197
||||||||||||| |||||||| ||||||| ||| |||| |||||| || ||||||||||
Sbjct 118 TCAACTGAAATCTTACAGAGAG-CCTCTTTCCTT-GGAATTTCGATCCCGTGTACGTTAT 175
Query 198 cttcttc--tt-cttcttctctttct-CAAAATTCGTGTATCTTCTGGGAAATTTTCAGA 253
||||||| || || ||||||||||| || || ||||| | | ||||||||||||||
Sbjct 176 CTTCTTCTTTTCCTACTTCTCTTTCTCCATAA-TCGTG--T-GT-GGGGAAATTTTCAGA 230
Query 254 TTTAGATGGAGAAAGGGGTTGGATTTGAGAAAGACATGAAGACAGTCA--G-TGATGGGT 310
|| ||||||||||||| |||||||||||||||| | ||||||||| | | ||||||||
Sbjct 231 -TTGGATGGAGAAAGGGATTGGATTTGAGAAAGAGAAGAAGACAGTGAGTGATGATGGGT 289
Query 311 TTGTCGGAGGTTTTTTCCCTGTCTCTACCACCAAGATCGCGTGGAAATCAAGAAAAAGAT 370
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 290 TTGTCGGAGGTTTTTTCCCTGTCTCTACCACCAAGATCGCGTGGAAGTCAAGAAAAAGAT 349
Query 371 CAGCATTGTTGAACCT-AGACAAAGCACCGGAGGCTGTTACGGAGGTCACACCAGAGAAG 429
|||||| | ||| || | |||| |||||||||| ||||| |||||||||||||||||||
Sbjct 350 CAGCATCGGCGAA-CTCAAACAAGGCACCGGAGGTTGTTATGGAGGTCACACCAGAGAAG 408
Query 430 AACGAGATAACAGCAATGGATACCGAGAAAGTTGGGGAACCAATGACCACAACTCCTCTT 489
| |||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||
Sbjct 409 AGCGAGATAACAGCAATGGAGACCGACAAAGTTGGGGAACCAACGACCACAACTCCTCTT 468
Query 490 CTGTCCGAGAAAAGGAAAGCTCTGTTCGAGCCACTTGAACCCATTACGAACTTGAACGGA 549
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 469 CTGTCCGAGAAAAGGAAAGCTCTGTTCGAGCCACTTGAACCCATTACAAACTTGAACGGA 528
Query 550 AAGCGACCAACTGCGGCTGATTCATTGTTGCCACCGCCGGATTTCGAGACTGCAAACTAC 609
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 529 AAGCGACCAACAGCTGCTGATTCATTGTTGCCACCGCCGGATTTCGAGACTGCAAACTAC 588
Query 610 CCAAAAGGCTGGTTGATCGGTAAGAAGAGGAAGCTTGTGAATGTTGATGTAGTTGAGAGC 669
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 589 CCGAAAGGCTGGTTGATCGGTAAGAAGAGGAAGCTAGTGAATGTTGATGTAGTTGAGAGC 648
Query 670 ATGCGTAGAATAGCTGTCCAAGAAATGAACAGAAAGGATCGAGAGATAGATGGGTTAAAC 729
||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 649 ATGCGAAGAATCGCTGTCCAAGAAATGAACAGAAAGGATCGAGAGATTGATGGGTTAAAC 708
Query 730 GAGCAGCTAGAAGAGGATTCACGGTGCTTAGAGCATCTACAGCTTCAGCTGCTacaagag 789
|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 709 GAGCAGCTAGAAGAGGATTCACGGTGCTTAGAGCATCTTCAACTTCAGCTGCTACAAGAA 768
Query 790 agaagcaagagaacagagattgaaagagagaacacaatgttgaaagagcaagTTGATATG 849
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 769 AGAAGCAAGAGAACAGAGATTGAAAGAGAGAACACAATGTTGAAAGAGCAAGTCGATATG 828
Query 850 CTTGTGAACATGATACAAGAAGATGACGAAGAAGGAGCTGAAGAACCCTAAGCTAGTTCT 909
||||| |||||||||||| ||||||| |||||||||||||||||||||||||||| || |
Sbjct 829 CTTGTCAACATGATACAACAAGATGAAGAAGAAGGAGCTGAAGAACCCTAAGCTATTTTT 888
Query 910 C-ATCAAATTTATGTCTCACCTATAATAGCTGTGTTCTGttttttttATTCTTTTGTAGA 968
| |||||| ||||||| ||||||||||||||||| ||||||| ||| |||||||||||||
Sbjct 889 CCATCAAACTTATGTCCCACCTATAATAGCTGTGCTCTGTTTGTTT-ATTCTTTTGTAGA 947
Query 969 TTTGTCTCGTCCACaa-aa-aag-aagaaaagaaagaagCTTAACCATCTATTATTTGGT 1025
||||||||||| | | || ||| |||||||||||||||||| || || |||||||||||
Sbjct 948 TTTGTCTCGTCGTCCATAAGAAGGAAGAAAAGAAAGAAGCTTTACAATGTATTATTTGGT 1007
Query 1026 TAAGCTACTCTTGTTCCCTTGTGTGATAGAACAAAACATAATCAAGAACATTATATATTC 1085
||||||||| |||||||||||||| || || | | | || | |
Sbjct 1008 TAAGCTACTGTTGTTCCCTTGTGT-AT-----------TA-T-A------T-AT-T---C 1042
Query 1086 TAAGTTATGAGTTCTCCTGCAAGATTTGAACCTGGCATTTGATTGAATCGATT-ATGTTC 1144
|||||| |||||||||||||||||||||||||||||||||||||||||| ||| | ||||
Sbjct 1043 TAAGTTCTGAGTTCTCCTGCAAGATTTGAACCTGGCATTTGATTGAATC-ATTGAAGTTC 1101
Query 1145 ATTGAAGCTCTTAGGAGGAAAAAGAACCATTTGgtgtgtgtgtgtgtgtgtgtATCTTTC 1204
|| | | |||| ||| |||||||||||||||||||||||||||| | ||| |
Sbjct 1102 -TT----C-CG-AGGATGAA---GAACCATTTGGTGTGTGTGTGTGTGTGT-TG-CTT-C 1148
Query 1205 TTCAGCAAGAAACAGAGGCAAAA 1227
||||||||||||||||||||
Sbjct 1149 ---AGCAAGAAACAGAGGCAAAA 1168
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46548081657
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5