BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G80950.1
Length=1484
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477149 jgi|Araly1|477149|fgenesh2_kg.2__2279__AT1G80950.1 2257 0.0
> Ahg477149 jgi|Araly1|477149|fgenesh2_kg.2__2279__AT1G80950.1
Length=1462
Score = 2257 bits (1222), Expect = 0.0
Identities = 1405/1488 (94%), Gaps = 33/1488 (2%)
Strand=Plus/Plus
Query 4 GGGAAATCTAGAGACGACGAGGAAAAAAGGATGACACTTTCTTCAGATCCGCGATCTATT 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GGGAAATCTAGAGACGACGAGGAAAAAAGGATGACACTTTCTTCAGATCCGCGATCTATT 60
Query 64 TCTTCATC-CCAACATAACACGA-ACTTCCTTGTGTGATTCAATATCTGAAACCCTCTCT 121
| ||||| | | ||| | | ||||||||||||||||||||||||||| || ||||
Sbjct 61 TGATCATCTTC-TCCGAAC-CCACTCTTCCTTGTGTGATTCAATATCTGAAA-CC-CTCT 116
Query 122 CTTCCTTATaaaaaaaaccaaaaaaaGATTAGATTTTTAGGTTAGGTG-AA--AACAATA 178
| | | | | |||||||||||||||||||||||||||| || || ||||
Sbjct 117 C-T-C-T-T-----------AAAAAAGATTAGATTTTTAGGTTAGGTGAAACGAATAATA 161
Query 179 ATGGAATCAGAGCTCAAAGATTTGAATTCGAATTCGAATCCTCCGTCGAGCAAAGAGGAC 238
|||||||||||||||||||| | || ||||||||||||||||||||||||||||||
Sbjct 162 ATGGAATCAGAGCTCAAAGA--T---TT-GAATTCGAATCCTCCGTCGAGCAAAGAGGAA 215
Query 239 CGGCCGTTACTGAAATCAGAATCCGATTTGGCGGCTGCCATTGAAGAGTTAGACAAAAAG 298
||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 216 AGGCCGTTACTGAAATCAGATTCCGATTTGGCGGCCGCCATTGAAGAGTTAGACAAAAAG 275
Query 299 TTCGCACCTTACGCGAGGACCGATTTGTATGGGACGATGGGTTTGGGTCCTTTCCCGATG 358
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 276 TTCGCACCTTACGCGAGGACCGATTTGTATGGGACCATGGGTTTGGGTCCTTTTCCGATG 335
Query 359 ACGGAGAATATTAAATTGGCGGTTGCATTGGTGACTCTTGTTCCATTGCGGTTTCTTCTC 418
|||||||| ||||| |||||||||||||||||||| |||||||| ||||||||| |||||
Sbjct 336 ACGGAGAAGATTAAGTTGGCGGTTGCATTGGTGACGCTTGTTCCTTTGCGGTTTATTCTC 395
Query 419 TCGATGAGCATCTTGCTTCTCTATTACTTGATTTGTAGGGTATTTACGCTGTTTTCTGCT 478
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 396 TCGATGAGCATCTTGCTTCTGTATTACTTGATTTGTAGGGTATTTACGCTGTTTTCTGCT 455
Query 479 CCTTATCGTGGGCCAGAGGAAGAGGAAGATGAAGGTGGAGTTGTTTTTCAGGAAGATTAT 538
||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||
Sbjct 456 CCTTATCGTGGGCCAGAGGAAGAGGAAGACGAAGGTGGTGTTGTTGTTCAGGAAGATTAT 515
Query 539 GCTCACATGGAAGGTTGGAAACGGACTGTTATCGTCCGGTCTGGGAGGTTTCTCTCTAGG 598
|||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||
Sbjct 516 GCTCACATGGAAGGATGGAAACGGACTGTTATCGTGCGCTCTGGGAGGTTTCTCTCTAGG 575
Query 599 GTTTTGCTTTTCGTTTTTGGGTTTTATTGGATTCACGAGAGCTGTCCAGATCGAGATTCA 658
|||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 576 GTTTTGCTTTTCGTCTTTGGGTTTTATTGGATTCACGAGAGCCGTCGAGATCGAGATTCA 635
Query 659 GACATGGATTCTAATCCTAAAACTACTTCTACAGAGATAAACCAGAAAGGGGAAGCCGCC 718
| ||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 636 GCCATGGATTCCAATCATAAAACTACTTCTACAGAGATTAACCAGAAAGGGGAAGCCGCC 695
Query 719 ACGGAGGAACCTGAAAGACCTGGAGCCATTGTGTCCAATCATGTTTCGTACTTGGACATT 778
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 696 ACGGAGGAACCTGAAAGACCTGGAGCCATTGTGTCCAATCACGTTTCGTACTTGGACATT 755
Query 779 TTGTATCATATGTCTGCTTCTTTTCCAAGTTTTGTTGCCAAGAGATCAGTGGGCAAACTT 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 756 TTGTATCATATGTCTGCTTCTTTTCCAAGTTTTGTTGCCAAGAGATCAGTGGGCAAACTT 815
Query 839 CCTCTTGTTGGCCTCATTAGCAAATGCCTTGGTTGTGTCTATGTTCAAAGAGAAGCAAAA 898
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 816 CCTCTTGTTGGCCTCATTAGCAAATGCCTTGGTTGTGTCTATGTTCAAAGAGAAGCAAAG 875
Query 899 TCGCCTGATTTCAAGGGTGTATCTGGCACAGTAAATGAAAGAGTTCGAGAAGCTCATAGC 958
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 876 TCGCCTGATTTCAAGGGTGTATCTGGCACAGTAAATGAAAGAGTTCGAGAAGCACATAGG 935
Query 959 AATAAATCTGCTCCAACTATTATGCTTTTTCCAGAAGGAACAACTACCAATGGAGACTAC 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 936 AATAAATCTGCTCCAACTATTATGCTTTTTCCAGAAGGAACAACTACCAATGGAGACTAC 995
Query 1019 TTACTTACATTCAAGACAGGTGCATTTTTGGCTGGAACTCCAGTTCTTCCGGTAATATTA 1078
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 996 TTACTTACATTCAAGACAGGTGCATTTTTGGCTGGAACTCCTGTTCTTCCGGTAATTTTA 1055
Query 1079 AAATATCCGTATGAGCGCTTCAGTGTGGCATGGGATACCATATCCGGGGCACGCCACATT 1138
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1056 AAATATCCATATGAGCGCTTCAGTGTGGCATGGGATACAATATCCGGGGCACGCCACATA 1115
Query 1139 TTATTCCTTCTCTGTCAAGT-CGTAAATCACTTGGAAGTCATACGGTTACCTGTATACTA 1197
||||||||||||||||| || |||||||||||||||||||||||||||| ||||||||||
Sbjct 1116 TTATTCCTTCTCTGTCA-GTTCGTAAATCACTTGGAAGTCATACGGTTATCTGTATACTA 1174
Query 1198 CCCATCCCAAGAAGAGAAAGACGATCCCAAACTTTATGCTAGCAATGTTCGGAAATTAAT 1257
|||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 1175 CCCATCTCAAGAAGAGAAAGATGATCCCAAACTTTATGCTAGCAATGTTCGGAGATTAAT 1234
Query 1258 GGCCACCGAGGGTAACTTGATTCTATCGGAGTTGGGACTTAGCGACAAAAGGATATATCA 1317
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1235 GGCCACCGAGGGTAACTTGATTTTATCGGAGTTGGGACTTAGCGACAAAAGGATATATCA 1294
Query 1318 CGCAACTCTCAATGGTAATCTTAGTCAAACCCGTGATTTCCATCAGAAAGAAGAATGAAA 1377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1295 CGCAACTCTCAATGGTAATCTTAGTCAAACCCGTGATTTCCATCAGAAAGAAGAATGAAA 1354
Query 1378 TTTT-CTGGCCTGACAATGTTTGTAATGTAGTAGTCTTTACCAAAAACAACCACGACCTT 1436
|||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 1355 TTTTACTGGCCTGACAATGTTTGTAATGTAGTAGTCTTTACCAAAAACAACCATGACCAT 1414
Query 1437 GATTGAATAATGGTTCTTGTGATGATAATAAAAACCAAAAGTTTGATT 1484
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1415 GATTGAATAATGGTTCTTGTGATGATAATAAAAACCAAAAGTTTGATT 1462
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55535577210
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5