BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G80950.1 Length=1484 Score E Sequences producing significant alignments: (Bits) Value Ahg477149 jgi|Araly1|477149|fgenesh2_kg.2__2279__AT1G80950.1 2257 0.0 > Ahg477149 jgi|Araly1|477149|fgenesh2_kg.2__2279__AT1G80950.1 Length=1462 Score = 2257 bits (1222), Expect = 0.0 Identities = 1405/1488 (94%), Gaps = 33/1488 (2%) Strand=Plus/Plus Query 4 GGGAAATCTAGAGACGACGAGGAAAAAAGGATGACACTTTCTTCAGATCCGCGATCTATT 63 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GGGAAATCTAGAGACGACGAGGAAAAAAGGATGACACTTTCTTCAGATCCGCGATCTATT 60 Query 64 TCTTCATC-CCAACATAACACGA-ACTTCCTTGTGTGATTCAATATCTGAAACCCTCTCT 121 | ||||| | | ||| | | ||||||||||||||||||||||||||| || |||| Sbjct 61 TGATCATCTTC-TCCGAAC-CCACTCTTCCTTGTGTGATTCAATATCTGAAA-CC-CTCT 116 Query 122 CTTCCTTATaaaaaaaaccaaaaaaaGATTAGATTTTTAGGTTAGGTG-AA--AACAATA 178 | | | | | |||||||||||||||||||||||||||| || || |||| Sbjct 117 C-T-C-T-T-----------AAAAAAGATTAGATTTTTAGGTTAGGTGAAACGAATAATA 161 Query 179 ATGGAATCAGAGCTCAAAGATTTGAATTCGAATTCGAATCCTCCGTCGAGCAAAGAGGAC 238 |||||||||||||||||||| | || |||||||||||||||||||||||||||||| Sbjct 162 ATGGAATCAGAGCTCAAAGA--T---TT-GAATTCGAATCCTCCGTCGAGCAAAGAGGAA 215 Query 239 CGGCCGTTACTGAAATCAGAATCCGATTTGGCGGCTGCCATTGAAGAGTTAGACAAAAAG 298 ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| Sbjct 216 AGGCCGTTACTGAAATCAGATTCCGATTTGGCGGCCGCCATTGAAGAGTTAGACAAAAAG 275 Query 299 TTCGCACCTTACGCGAGGACCGATTTGTATGGGACGATGGGTTTGGGTCCTTTCCCGATG 358 ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| Sbjct 276 TTCGCACCTTACGCGAGGACCGATTTGTATGGGACCATGGGTTTGGGTCCTTTTCCGATG 335 Query 359 ACGGAGAATATTAAATTGGCGGTTGCATTGGTGACTCTTGTTCCATTGCGGTTTCTTCTC 418 |||||||| ||||| |||||||||||||||||||| |||||||| ||||||||| ||||| Sbjct 336 ACGGAGAAGATTAAGTTGGCGGTTGCATTGGTGACGCTTGTTCCTTTGCGGTTTATTCTC 395 Query 419 TCGATGAGCATCTTGCTTCTCTATTACTTGATTTGTAGGGTATTTACGCTGTTTTCTGCT 478 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 396 TCGATGAGCATCTTGCTTCTGTATTACTTGATTTGTAGGGTATTTACGCTGTTTTCTGCT 455 Query 479 CCTTATCGTGGGCCAGAGGAAGAGGAAGATGAAGGTGGAGTTGTTTTTCAGGAAGATTAT 538 ||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||| Sbjct 456 CCTTATCGTGGGCCAGAGGAAGAGGAAGACGAAGGTGGTGTTGTTGTTCAGGAAGATTAT 515 Query 539 GCTCACATGGAAGGTTGGAAACGGACTGTTATCGTCCGGTCTGGGAGGTTTCTCTCTAGG 598 |||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||| Sbjct 516 GCTCACATGGAAGGATGGAAACGGACTGTTATCGTGCGCTCTGGGAGGTTTCTCTCTAGG 575 Query 599 GTTTTGCTTTTCGTTTTTGGGTTTTATTGGATTCACGAGAGCTGTCCAGATCGAGATTCA 658 |||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||| Sbjct 576 GTTTTGCTTTTCGTCTTTGGGTTTTATTGGATTCACGAGAGCCGTCGAGATCGAGATTCA 635 Query 659 GACATGGATTCTAATCCTAAAACTACTTCTACAGAGATAAACCAGAAAGGGGAAGCCGCC 718 | ||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||| Sbjct 636 GCCATGGATTCCAATCATAAAACTACTTCTACAGAGATTAACCAGAAAGGGGAAGCCGCC 695 Query 719 ACGGAGGAACCTGAAAGACCTGGAGCCATTGTGTCCAATCATGTTTCGTACTTGGACATT 778 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 696 ACGGAGGAACCTGAAAGACCTGGAGCCATTGTGTCCAATCACGTTTCGTACTTGGACATT 755 Query 779 TTGTATCATATGTCTGCTTCTTTTCCAAGTTTTGTTGCCAAGAGATCAGTGGGCAAACTT 838 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 756 TTGTATCATATGTCTGCTTCTTTTCCAAGTTTTGTTGCCAAGAGATCAGTGGGCAAACTT 815 Query 839 CCTCTTGTTGGCCTCATTAGCAAATGCCTTGGTTGTGTCTATGTTCAAAGAGAAGCAAAA 898 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 816 CCTCTTGTTGGCCTCATTAGCAAATGCCTTGGTTGTGTCTATGTTCAAAGAGAAGCAAAG 875 Query 899 TCGCCTGATTTCAAGGGTGTATCTGGCACAGTAAATGAAAGAGTTCGAGAAGCTCATAGC 958 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 876 TCGCCTGATTTCAAGGGTGTATCTGGCACAGTAAATGAAAGAGTTCGAGAAGCACATAGG 935 Query 959 AATAAATCTGCTCCAACTATTATGCTTTTTCCAGAAGGAACAACTACCAATGGAGACTAC 1018 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 936 AATAAATCTGCTCCAACTATTATGCTTTTTCCAGAAGGAACAACTACCAATGGAGACTAC 995 Query 1019 TTACTTACATTCAAGACAGGTGCATTTTTGGCTGGAACTCCAGTTCTTCCGGTAATATTA 1078 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| Sbjct 996 TTACTTACATTCAAGACAGGTGCATTTTTGGCTGGAACTCCTGTTCTTCCGGTAATTTTA 1055 Query 1079 AAATATCCGTATGAGCGCTTCAGTGTGGCATGGGATACCATATCCGGGGCACGCCACATT 1138 |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1056 AAATATCCATATGAGCGCTTCAGTGTGGCATGGGATACAATATCCGGGGCACGCCACATA 1115 Query 1139 TTATTCCTTCTCTGTCAAGT-CGTAAATCACTTGGAAGTCATACGGTTACCTGTATACTA 1197 ||||||||||||||||| || |||||||||||||||||||||||||||| |||||||||| Sbjct 1116 TTATTCCTTCTCTGTCA-GTTCGTAAATCACTTGGAAGTCATACGGTTATCTGTATACTA 1174 Query 1198 CCCATCCCAAGAAGAGAAAGACGATCCCAAACTTTATGCTAGCAATGTTCGGAAATTAAT 1257 |||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||| Sbjct 1175 CCCATCTCAAGAAGAGAAAGATGATCCCAAACTTTATGCTAGCAATGTTCGGAGATTAAT 1234 Query 1258 GGCCACCGAGGGTAACTTGATTCTATCGGAGTTGGGACTTAGCGACAAAAGGATATATCA 1317 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1235 GGCCACCGAGGGTAACTTGATTTTATCGGAGTTGGGACTTAGCGACAAAAGGATATATCA 1294 Query 1318 CGCAACTCTCAATGGTAATCTTAGTCAAACCCGTGATTTCCATCAGAAAGAAGAATGAAA 1377 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1295 CGCAACTCTCAATGGTAATCTTAGTCAAACCCGTGATTTCCATCAGAAAGAAGAATGAAA 1354 Query 1378 TTTT-CTGGCCTGACAATGTTTGTAATGTAGTAGTCTTTACCAAAAACAACCACGACCTT 1436 |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| | Sbjct 1355 TTTTACTGGCCTGACAATGTTTGTAATGTAGTAGTCTTTACCAAAAACAACCATGACCAT 1414 Query 1437 GATTGAATAATGGTTCTTGTGATGATAATAAAAACCAAAAGTTTGATT 1484 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1415 GATTGAATAATGGTTCTTGTGATGATAATAAAAACCAAAAGTTTGATT 1462 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55535577210 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5