BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G01060.1
Length=1264
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484011 jgi|Araly1|484011|fgenesh2_kg.5__3__AT2G01060.1 1901 0.0
> Ahg484011 jgi|Araly1|484011|fgenesh2_kg.5__3__AT2G01060.1
Length=1259
Score = 1901 bits (1029), Expect = 0.0
Identities = 1196/1273 (94%), Gaps = 26/1273 (2%)
Strand=Plus/Plus
Query 1 GGAATTCGTCGATCGAGCGATAAGAAGAAGACT-GGAAtttttttGAGGAGGACTCTGCT 59
||||||||||||||||||||| || ||| || |||| |||||||||||||||||||||
Sbjct 1 GGAATTCGTCGATCGAGCGAT---AACAAGTCTGGGAAATTTTTTGAGGAGGACTCTGCT 57
Query 60 CCATCGCCGCCCGCCCTGTAACCCACCGGACTCAGTAAACTAGTCTGTAACACAATATCT 119
||| || |||||| || | | ||||||| |||||||||||||| |||||||| | |
Sbjct 58 GCAT---CG-CCGCCCAGTGATCAACCGGACACAGTAAACTAGTCTATAACACAA-AACC 112
Query 120 TCTATTTCAGATAAGATTTAGCTTGGAGAAGAGCAAGTTCCGAAAATGGA-GGG-G-CGT 176
|| | ||||||| |||||||| ||| |||||||||||||||||||||||| ||| | |||
Sbjct 113 TC-A-TTCAGATTAGATTTAGATTGAAGAAGAGCAAGTTCCGAAAATGGAGGGGCGTCGT 170
Query 177 C-G-----TGTATAGATCCACCACCCACAGCCCTGATGGAAGCAGACAACGGAGGCCCCA 230
| | |||||||||||||||| ||||||||||||||||| ||||||||| ||| |||
Sbjct 171 CTGATTCTTGTATAGATCCACCACTCACAGCCCTGATGGAAGGAGACAACGGCGGCACCA 230
Query 231 ATTCTAGTCATGCATCCAAACAACGTCTGCGTTGGACGCATGAGCTACATGAACGCTTCG 290
|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 231 ATTCTAGTCATGCATCCAAACAACGTTTGCGTTGGACGCATGAGCTTCATGAACGCTTCG 290
Query 291 TTGATGCCGTTGCTCAACTTGGTGGCCCTGATAGAGCTACACCCAAAGGCGTTCTTAGAG 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 291 TTGATGCCGTTGCTCAACTTGGTGGCCCTGATAGAGCTACACCCAAAGGCGTTCTTAGAG 350
Query 351 TGATGGGTGTACAAGGCTTAACTATATATCATGTCAAGAGTCACTTACAGAAATATCGAC 410
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 351 TGATGGGTGTACAAGGATTAACTATATATCATGTCAAGAGTCACTTACAGAAATATAGAC 410
Query 411 TTGCAAAGTATCTTCCAGATTCGTCTTCTGAAGGGaaaaaaaCTGATAAGAAAGAATCTG 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 411 TTGCAAAGTATCTTCCAGATTCGTCTTCTGAAGGGAAAAAAACTGATAAGAAAGAATCTG 470
Query 471 GAGATATGCTCTCTGGGTTGGACGGCTCGTCGGGAATGCAGATAACTGAAGCCCTCAAGT 530
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 GTGATATGCTCTCTGGGTTGGACGGCTCGTCGGGAATGCAGATAACTGAAGCCCTCAAGT 530
Query 531 TGCAGATGGAAGTTCAGAAACGATTACACGAGCAACTAGAAGTGCAAAGACAGCTGCAAC 590
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 531 TGCAGATGGAAGTTCAGAAACGACTGCACGAGCAACTAGAAGTGCAAAGACAGCTGCAAC 590
Query 591 TACGGATAGAAGCACAAGGAAAGTACTTGAAGAAGATAATTGAAGAGCAACAACGACTCA 650
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 591 TACGAATAGAAGCACAAGGGAAGTACTTGAAGAAGATAATTGAAGAGCAACAACGACTCA 650
Query 651 GTGGAGTACTCGGCGAACCCTCAGCCCCAGTAACGGGCGATTCAGATCCTGCAACCCCTG 710
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 651 GTGGAGTACTTGGCGAACCCTCAGCCCCAGTAACGGGCGATTCAGATCCTGCAACCCCTG 710
Query 711 CCCCAACATCTGAGTCTCCTCTTCAAGACAAGTCTGGCAAGGACTGTGGACCAGACAAAA 770
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 711 CCCCAACATCTGAGTCTCCTCTTCAAGACAAGTCTGGCAAGGAATGTGGACCAGACAAGA 770
Query 771 GTCTCTCAGTTGACGAGTCTCTCTCATCTTACCGGGAGCCTTTAACACCAGACTCAGGGT 830
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 771 GCCTCTCAGTTGACGAGTCTCTCTCATCTTACCGGGAGCCTTTAACACCAGACTCGGGGT 830
Query 831 GTAACATTGGGTCTCCAGATGAGAGCACAGGAGAGGAGAGATTATCAAAGAAGCCTCGAT 890
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 831 GTAACATTGGGTCTCCAGATGAGAGCGGAGGAGAGGAGAGATTATCAAAGAAGCCTAGAT 890
Query 891 TGGTGAGAGGTGCAGCTGGTTATACACCTGATATTGTAGTGGGTCACCCAATACTAGAAT 950
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 891 TGGTGAGAGGTGCAGCTGGTTATACACCTGATATTGTAGTGGCACACCCAATACTAGAAT 950
Query 951 CAGGCTTGAACACTTCTTACCATCAGTCAGACCATG-TCCTCGCCTTTGACCAGCCATCT 1009
||||||||||| |||||||||||| ||||||||||| || ||||||||||||||||||||
Sbjct 951 CAGGCTTGAACTCTTCTTACCATCCGTCAGACCATGCTC-TCGCCTTTGACCAGCCATCT 1009
Query 1010 ACATCACTGCTTGGGGCCGAAGAACAGTTGGATAAGGTTTCAGGAGATAATCTTTGAGTT 1069
||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 1010 ACATCACTGCTTGGGGCCGAAGATCAGTTGGATAAGGGTTCAGGAGATAATCTTTGAGTT 1069
Query 1070 GTTGAGTGTACCACATGTAGTGTTGTTTATCCTAATCCTTATTAGTTAGGAGTTTCCTCT 1129
|||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 1070 GTTGAGTGTACCACATGTAGTGTTGTCTATCCTAATCTTTATTAGTTAGGAGTTTCCTCT 1129
Query 1130 AATAATGTGATCACAAGTC-GTTAATTCTCTAGGCACTATCACGAGCATGAAGAATGAAT 1188
| | |||||||||||| || || |||| |||||||||| ||| |||||||||||||||||
Sbjct 1130 AGTGATGTGATCACAACTCTGT-AATTTTCTAGGCACTGTCAAGAGCATGAAGAATGAAT 1188
Query 1189 ATGTCTGTGTTGTGCTGTAATTTGGTAAACACAAAACAAAATTACTCTTATTCCCAACAC 1248
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1189 ATGTCTGTGTTGTGCTGTAATTTGGTAAACACAA--CAAAATTACTCTTATTCCCAACAC 1246
Query 1249 ACTACATTCTTCT 1261
||| |||||||||
Sbjct 1247 ACTGCATTCTTCT 1259
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47234294163
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5