BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G01070.1
Length=1807
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484013 jgi|Araly1|484013|fgenesh2_kg.5__5__AT2G01070.1 2758 0.0
> Ahg484013 jgi|Araly1|484013|fgenesh2_kg.5__5__AT2G01070.1
Length=1771
Score = 2758 bits (1493), Expect = 0.0
Identities = 1676/1761 (95%), Gaps = 26/1761 (1%)
Strand=Plus/Plus
Query 61 TCCTCGTTCCCC---GATAATGGATTTGGGAAAACTGATCCAGCTGTCTGC-GCTGCTGT 116
|||||||||||| ||||||||||||| ||||||||||||| || ||| | |||| |||
Sbjct 20 TCCTCGTTCCCCGATGATAATGGATTTGAGAAAACTGATCCACCTATCT-CTGCTGTTGT 78
Query 117 GCCCATTTCTTCTATCATTACACTTTAGAATCGCTGGGGCCTCCGCCCACATCTACTCTT 176
||||| ||||||||||||| ||||||| |||||| ||||||||||||||||||||| |||
Sbjct 79 GCCCACTTCTTCTATCATTCCACTTTAAAATCGCAGGGGCCTCCGCCCACATCTACCCTT 138
Query 177 CCCAGCCCTTCCACGATGTCGGTAATTCTCTCCTCCTCTACGGTGGCAGCGAGGGCATCT 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 139 CCCAGCCCTTCCACGATGTCGGTAATTCTCTCCTCCTCTACGGTGGCAGCGAGGGCATCT 198
Query 237 TCGCCTCTTCCCGATCTTTAATCAGGTTTGAGAACATCACTCTCTGGAGGACAATTACCG 296
|||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 199 TCGCCTCTCCCCGATCTTTCATCAGGTTTGAGAACATCACTCTCTGGAGGACAATTACCG 258
Query 297 GTAAGGGCCACCGCAGCAATGGGTTAGTTCAAGCAGTGATCTTTGAAGCCTCCGATCGTA 356
||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 259 ATAAAGGCCACCGCAGCAATGGGTTAATTCAATCAGTGATCTTTGAAGCCTCCGATCGTA 318
Query 357 ACAATATCGGTGGTTCAGCTTACGGAGGCCAAAGATCTATTTGCTGCACTCCAGATCTGG 416
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 319 ACAATATCGGTGGTTCAGCTTACGGCGGCCAAAGATCTATTTGCTGCACTCCAGATCTGG 378
Query 417 CCAAGCTTCAAGGCTGTAAGCAGGGTGAGATCATTAGGATTCCTTCTCCACATGACCCTC 476
||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 379 CCAAGCTTCAAGGTTGTAAGCAGCGTGAGATCATTAGGATTCCTTCTGCACATGACCCT- 437
Query 477 A-ATGGCCTATCCTCTTACCTGTCCGCTTTAAAGGAAAACGCTCGTCTGCTAAGATGGCA 535
| |||||||||||||||||| ||||||| ||||||||||| | |||||||||||||| |
Sbjct 438 AGATGGCCTATCCTCTTACCCCTCCGCTTCAAAGGAAAACGTTTGTCTGCTAAGATGGAA 497
Query 536 GACACTGAGATTCTTATCACCAAGACTGGAATCTATAATCTCTTATTCATATCTTGTGAT 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 498 GACACTGAGATTCTTATCACCAAGACTGGAATCTATAATCTCTTATTCATATCTTGTGAT 557
Query 596 CCACAACTTAAGGGCCTCAAAATGACCGGAAAGACTGTTTGGAAAAATCCCGACGGCTAT 655
|||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 558 CCACAACTCAAGGGCCTCACAATGACCGGAAAGACTGTTTGGAAAAATCCCGACGGCTAT 617
Query 656 CTTCCTGGTAGGATGGCTCCACTCGTGAATTTCTATGTCTATATGTCTCTCGCTTATTTG 715
|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 618 CTTCCTGGTAGGATGGCTCCACTCATGAATTTCTATGTCTTTATGTCTCTCGCTTATTTG 677
Query 716 TTGCTCAGTGCCGTCTGGTTCTTCCAGTATTTGAGGTTCCGGATGGATATATTGCCACTT 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 678 TTGCTCAGTGCCGTCTGGTTCTTCCAGTATTTGAGGTTCCGGATGGATATATTGCCACTT 737
Query 776 CAACATTGCATTACTGCCGTCATTCTTCTAGGATTGCTTGAGATGCTCTTTTGGTACTTG 835
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 738 CAACATTGCATTACTGCGGTCATTCTTCTCGGATTGCTTGAGATGCTCTTTTGGTACTTG 797
Query 836 GATTATGCTAATTTTAATCA-CACGGGGATGAGGCCTTTAGCCCTTACTACATGGGTTGT 894
|||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 798 GATTATGCAAATTTTAA-CAACACGGGGATGAGGCCTTTAGCCCTTACTACATGGGTTGT 856
Query 895 TACCATTGGTGCCTTGAGAAAGACTGTTTCCCGCATTCTCATTCTCTGTGTTTCCATGGG 954
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 857 TACCATTGGTGCCTTCAGAAAGACTGTTTCCCGCATTCTCATTCTCTGTGTTTCCATGGG 916
Query 955 ATTTGGGGTTGTCAAATCTACTCTTGGTGGTCTCACTTCTAAAGTCCTCCTTGTTGGAGT 1014
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 917 ATTTGGGGTTGTCAAATCCACTCTTGGTGGTCTGACTTCTAAAGTCCTCCTTGTTGGAGT 976
Query 1015 TACTTACTTCATAGCTTCTGAGATCCTTGATATTGCTGAGCACGTTGGCATCATTGACGA 1074
|||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||
Sbjct 977 TACTTACTTCATAGCTTCTGAGATGCTTGATATAGCTGAGCACGTTGGCATAATTGACGA 1036
Query 1075 TATGTCCGGAAGATCAAAACTTTTTCTTGTCCTTCCTGACGCCTTCCTCGATGCATTTCT 1134
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1037 TATGTCCGGAAGATCAAAACTTTTTCTTGTCCTTCCTGACGCCTTCCTGGATGCATTTCT 1096
Query 1135 CATATTGTGGATATTTACCTCTCTTTCGAAAACACTGGAACAGTTACAGATGAAAAGGAC 1194
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1097 CATATTGTGGATATTTACCTCTCTTTCCAAAACACTGGAACAGTTACAGATGAAAAGGAC 1156
Query 1195 CTCGGTGAAGCTGGAAATTTACCGCAAGTTCTCAAATGCACTCGCTGTGATGGTTGTTGC 1254
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1157 CTCGGTGAAGCTGGAAATTTACCGCAAGTTCTCAAATGCTCTTGCTGTGATGGTTGTTGC 1216
Query 1255 CTCTGTTGCGTGGATAGTGTATGAGGTGTATTTCAAAGCAACAGATCCATTCAATGAACG 1314
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1217 CTCTGTTGCATGGATAGTGTATGAGGTGTATTTCAAAGCAACAGATCCATTCAATGAACG 1276
Query 1315 ATGGCAGACTGCTTGGACTATAACTGCCTTCTGGGATGTTATCGCATTCTTGTTGCTATG 1374
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1277 ATGGCAGACTGCTTGGACTATAACTGCCTTCTGGGATGTTATTGCATTCTTGTTACTATG 1336
Query 1375 TATTATTTGCTATCTCTGGACCCCCTCGCAGAACTCCCAAAGATATGCATATTCGGGAGA 1434
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1337 TATTATTTGCTATCTCTGGACCCCCTCACAGAACTCCCAAAGATATGCATATTCGGGAGA 1396
Query 1435 CGTGGATGAAGAAAACGAGGAAGCTCAATCTCTGACAGGGGGGAAGCAAGATGGTGATAT 1494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1397 CGTGGATGAAGAAAACGAGGAAGCTCAATCTCTGACAGGGGGGAAGCAAGATGGTGATAT 1456
Query 1495 TAGCTTAGTTAAGCAAGAGAAGAATGCGGAGTCGGACAGGGAAGAAGATGTTGAAGAAGA 1554
|| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1457 TAACTTAGTTAAGCAAGAGAAGAATGCTGAGTCGGACAGGGAAGAAGATGTTGAAGAAGA 1516
Query 1555 TAAAAGAGAGTGAGGAGAGTCAGTATA--GAAACGACGTGGCATCTGTGTTTGATCAAGA 1612
||| |||||||||||| |||| || || |||||||| ||||||||||||||||||| ||
Sbjct 1517 TAAGAGAGAGTGAGGATAGTCGGTGTAAAGAAACGACTTGGCATCTGTGTTTGATCATGA 1576
Query 1613 GTTGACGAAAATATAAATATCAGCAAGAGGTCAGCTATATAGCACAAAGCAAC---G--A 1667
||||||| || |||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1577 GTTGACGGAAGTATAAATATCAGCAAGAGGTCAGCTATATAGCACAAAGCAACAAAGCTA 1636
Query 1668 CG---TAATACATATATATGATGTAACTAAAGGATAGTAACTGTGTGTTTGTATTTGTTT 1724
|| |||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1637 CGACGTAATACATATAT--GATGTAACAAAAGGATAGTAACTGTGTGTTTGTATTTGTTT 1694
Query 1725 Gttttttt-AATATCAGATCCAACATTTTTTGAGTCATCTCTAACCCTTGTCTGAGTGTG 1783
||||||| || |||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 1695 TTTTTTTTTAA-ATCAGATCCAACATTT---GAGTCATCTCTAATCCTTGTCTGAGTGTG 1750
Query 1784 AGATTTGCCTAAAATTGCTGT 1804
|||||||||||||||||||||
Sbjct 1751 AGATTTGCCTAAAATTGCTGT 1771
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67838726345
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5