BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G01080.1
Length=1004
Score E
Sequences producing significant alignments: (Bits) Value
Ahg484014 jgi|Araly1|484014|fgenesh2_kg.5__6__AT2G01080.1 1367 0.0
> Ahg484014 jgi|Araly1|484014|fgenesh2_kg.5__6__AT2G01080.1
Length=906
Score = 1367 bits (740), Expect = 0.0
Identities = 850/898 (95%), Gaps = 27/898 (3%)
Strand=Plus/Plus
Query 111 AGAGTGAAAAGGGAGAGGGAGCTTCCTGCTTTCACTTACTATGCCTCCTCCTCCTTCTAG 170
|||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 30 AGAGTGGAAAGGGAGAGGGAGCTTCCTGCTTTCACTTATTATGCCTCCTCCTCCTTCTAG 89
Query 171 TTCTAGAG-CAGGTCTCAACGG-CGATCCGATTGCTGCTCAGAACCAGCAGCCGTATTAC 228
|||||| | |||| || ||||| | ||||||||||| |||||||||||||||||||||||
Sbjct 90 TTCTAG-GCCAGGCCTTAACGGAC-ATCCGATTGCTACTCAGAACCAGCAGCCGTATTAC 147
Query 229 CGGAGCTACTCATCGTCGTCGTCGGCGTCGCTGAAGGGATGCTGCTGCTGCTTGTTCTTG 288
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 148 CGGAGCTACTCATCGTCGTCGTCGGCGTCACTGAAGGGATGCTGCTGCTGCTTGTTCTTG 207
Query 289 CTGTTCGCGTTCCTGGCGCTGCTGGTACTGGCGGTGGTGCTCATCGTAATACTGGCGGTG 348
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 208 CTGTTCGCGTTCCTGGCGCTGCTGGTACTGGCGGTGGTGCTCATAGTAATACTGGCGGTG 267
Query 349 AAGCCGAAGAAGCCGCAGTTCGATCTGCAGCAAGTGGCAGTGGTGTACATGGGGATCTCC 408
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 268 AAGCCGAAGAAGCCGCAGTTCGATCTGCAGCAAGTGGCAGTGGTGTACATGGGAATCTCA 327
Query 409 AACCCAAGCGCTGTTCTGGATCCAACCACCGCCTCCCTCTCCCTCACCATCCGGATGCTC 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 328 AACCCAAGCGCTGTTCTGGATCCAACCACCGCCTCCCTCTCCCTCACCATCCGGATGCTC 387
Query 469 TTCACCGCCGTCAACCCAAACAAGGTCGGAATCAGGTACGGTGAGTCCAGCTTCACGGTC 528
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 388 TTCACCGCCGTCAACCCAAACAAGGTCGGAATCAGGTACGGCGAGTCCAGCTTCACGGTG 447
Query 529 ATGTACAAAGGCATGCCACTGGGGAGGGCGACGGTGCCTGGATTCTACCAGGATGCGCAC 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 448 ATGTACAAAGGCATGCCACTGGGGAGGGCGACGGTGCCTGGATTCTACCAGGATGCGCAC 507
Query 589 AGTACGAA-GAACGTTGAGGCCACCATCTCCGTCGACAGAGTCAATCTTATGCAAGCCCA 647
||||| || ||| || |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 508 AGTAC-AAGGAATGTGGAGGCCACCATCTCCGTCGATAGAGTCAATCTTATGCAAGCCCA 566
Query 648 CGCCGCCGATCTCGTCAGAGATGCTTCCTTGAACGACCGAGTGGAGCTCACAGTCCGCGG 707
||||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||
Sbjct 567 CGCCGCCGATCTCGTCAGAGACGCTTCCTTAAACGACAGAGTGGAGCTCACAGTCCGCGG 626
Query 708 AGACGTGGGGGCTAAGATCCGAGTCATGAATTTCGATTCACCGGGTGTTCAGGTATCCGT 767
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 627 AGACGTGGGGGCTAAGATCCGAGTCATGAATTTCGATTCACCGGGAGTTCAGGTATCCGT 686
Query 768 GAATTGCGGGATAGGCATTAGTCCCAGAAAGCAAGCTCTCATTTACAAGCAATGTGGCTT 827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 687 GAATTGCGGGATAGGCATTAGTCCCAGAAAGCAAGCTCTCATTTACAAGCAATGTGGCTT 746
Query 828 TGATGGCCTCAGCGTCTAATTCCAAAACTGTAACATAATAatattattatatatatatTT 887
|||||||||||||||||||||||||||||||||||||||| | | || |||||||| ||
Sbjct 747 TGATGGCCTCAGCGTCTAATTCCAAAACTGTAACATAATA-T-T-AT-ATATATAT-TT- 800
Query 888 GTACTGACTACTCCCAACTGCAGAGGAGTTGCaaaaaaaGATCCAGCCAAACTGGTAAAG 947
|||||||||||||||| | |||||||||| |||||||||||||||||||||
Sbjct 801 GTACTGACTACTCCCA---G--------TTGCAAAAAA-GATCCAGCCAAACTGGTAAAG 848
Query 948 AAATGTAACAAGATC--C-ATCCTTCCCCTGCCTTTTTTGGGAAATTTTTGTTTCTAC 1002
||||| ||||||||| | |||||||||||||||||||||| ||| ||||||||||||
Sbjct 849 AAATGGAACAAGATCATCCATCCTTCCCCTGCCTTTTTTGGAAAACTTTTGTTTCTAC 906
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37322335743
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5