BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G01090.1

Length=537
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg896040 jgi|Araly1|896040|Al_scaffold_0005_6                       291    5e-78
  Ahg911315 jgi|Araly1|911315|Al_scaffold_0001_1569                    213    1e-54


> Ahg896040 jgi|Araly1|896040|Al_scaffold_0005_6
Length=204

 Score =  291 bits (157),  Expect = 5e-78
 Identities = 169/175 (97%), Gaps = 0/175 (0%)
 Strand=Plus/Plus

Query  110  CAGAAGAAGATGTTGTTGATCAGAAAAGATACTTTGAGGAATCTTGCAAACCAAAATGTG  169
            |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  5    CAGAAGAAGAAGCTGTTGATCAGAAAAGATACTTTGAGGAATCTTGCAAACCAAAATGTG  64

Query  170  TGAAGCCACTACTTGAATATCAGGCGTGTGTCAAGAGGATCCAAGATGATGAGTCTGGCC  229
            |||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct  65   TGAAGCCACTTCTTGAATATCAGGCGTGTGTCAAGAGAATTCAAGATGATGAGTCTGGCC  124

Query  230  ACAAACATTGCACTGGGCAATATTTTGATTACTGGCATTGTGTTGACAAATGTGT  284
            ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  125  ACAAACATTGCACTGGGCAGTATTTTGATTACTGGCATTGTGTTGACAAATGTGT  179


> Ahg911315 jgi|Araly1|911315|Al_scaffold_0001_1569
Length=210

 Score =  213 bits (115),  Expect = 1e-54
 Identities = 157/177 (89%), Gaps = 4/177 (2%)
 Strand=Plus/Plus

Query  110  CAGAAGAAGATGTTGTTGAT-CAGAA-AAGATACTTTGAGGAATCTTGCAAACCAAAATG  167
            |||| || || ||||||||| || || ||| ||| |||||||||||||||||||||||||
Sbjct  5    CAGATGATGAAGTTGTTGATCCA-AAGAAG-TACCTTGAGGAATCTTGCAAACCAAAATG  62

Query  168  TGTGAAGCCACTACTTGAATATCAGGCGTGTGTCAAGAGGATCCAAGATGATGAGTCTGG  227
            ||||||||||||||| ||||||||||||||||| ||||| ||||||| |||||| |||||
Sbjct  63   TGTGAAGCCACTACTCGAATATCAGGCGTGTGTGAAGAGAATCCAAGGTGATGATTCTGG  122

Query  228  CCACAAACATTGCACTGGGCAATATTTTGATTACTGGCATTGTGTTGACAAATGTGT  284
            |||||| ||||||||||| || ||||| || |||||||||||  |||||||||||||
Sbjct  123  CCACAAGCATTGCACTGGCCAGTATTTCGACTACTGGCATTGCATTGACAAATGTGT  179



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19573817157


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5