BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G01100.1
Length=1211
Score E
Sequences producing significant alignments: (Bits) Value
Ahg322459 jgi|Araly1|322459|fgenesh1_pm.C_scaffold_5000003 1083 0.0
> Ahg322459 jgi|Araly1|322459|fgenesh1_pm.C_scaffold_5000003
Length=753
Score = 1083 bits (586), Expect = 0.0
Identities = 721/781 (92%), Gaps = 29/781 (4%)
Strand=Plus/Plus
Query 166 ATGGACTGCAAGAAGTTCATCCAGATGGTCGAGGAGAAGAAACGAAGAGTTCTTGAGAAG 225
||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||
Sbjct 1 ATGGACTGCAAGAAGTTCATCCAGATGGTTGAGGAGAAGAAACGACGAGTTCTAGAGAAG 60
Query 226 CAAGAAGCTCCTTTGAAATGGGAGCAGAAGCTAGAGGCGGCTGCGAATGCCAAAGCAGAC 285
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||
Sbjct 61 CAAGAAGCTCCTTTGAAATGGGAGCAGAAGCTAGAGGCGGCTGCCAATGCTAAAGCTGAC 120
Query 286 ACAGAAACTAAAGTGAAG-AGATCAAAGGGCCCTAAGAGAAAACAAAGGGCTGCGTCTGA 344
|||||||| ||||| ||| || ||||||||| |||||||||||||||||| ||| |||||
Sbjct 121 ACAGAAACCAAAGTAAAGAAG-TCAAAGGGCACTAAGAGAAAACAAAGGGGTGCATCTGA 179
Query 345 ATCTAGCTCAGAAAGTGATAGTAGCTCTGAGGTGAGAAGAAAGTCTAGAAGATCTCACAA 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 ATCTAGCTCAGAAAGTGATAGTAGCTCTGAGGTGAGAAGAAAGTCTAGAAGATCTCACAA 239
Query 405 TAAGCACCGAAGACATGCACACTCTGATTCAGATGACAGTGATAGGAGGAAAGAGAAGAA 464
|| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 240 TAGGCACCGAAGACATGCCCACTTTGATTCAGATGACAGTGATAGGAGGAAAGAGAAGAA 299
Query 465 ATCCAGGAGGCAGAAAAGAAGGTCCTTGAGTCCAAGCGATGATAGCACTGGTGATTATGA 524
||||| |||||||||||| | || | | |||||||||||| |||||||||
Sbjct 300 ATCCAAGAGGCAGAAAAG-A--------AG--C-A---ATGATAGCACTGATGATTATGA 344
Query 525 AAGTGGGTCAGAGGATGAGCTGAGGATGAAGATAAAGCACCATCGGAGGCACAAGTGGCA 584
||| |||||||||||||||| || || ||||||||||||||||||||||||
Sbjct 345 AAGCGGGTCAGAGGATGAGC------TG-AG-----GCACCATCGGAGGCACAAGTGGCA 392
Query 585 TAGCTCAAGAAAGACTTGCGATGATGACAGTACCGAAGATGTGAGAAGAAAACATTTAAA 644
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 393 TAGCTCAAGAAAGACTTGCGATGATGACAGTACCGAAGATGTGAGAAGAAGACATTTAAA 452
Query 645 GCATCACAGGCGCAGTGAGGTGGTCACTTCAAGTGATAGTGAGGAAGAGAGTGGAAGAAG 704
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 453 GCATCACAGGCGCAGTGAGTTGGTCACTTCAAGTGATAGTGAGGAAGAGAGTGGAAGAAG 512
Query 705 AAGGCGAGGCAAATATCACAGGCACAACAGAGGTTCAGCCTCCTCGAGTGGCTCGGAAGA 764
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 513 AAGGCGAGGCAAATATCACAGGCACAAAAGAGGTTCAGCCTCCTCGAGTGGCTCGGAAGA 572
Query 765 AGATAGTGGGAAAAGTATGAAGAGAAGGCAACATAAAAGGCATCGTTTGGCTGAGTCTTC 824
||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 573 AGATAGTGGAAAAAGTAGGAAGAGAAGGCAACATAAAAGGCATCATTTGGCTGAGTCTTC 632
Query 825 AAGTGAGGAAGATGGGGCAATGAGAAGGACTAGGCATCATAAACATGGCAGAGATTCAGC 884
||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 633 AAGTGAGGAAGATGGAGCAATGAGAAGGAGGAGGCATCATAAACATGACAGAGATTCAGC 692
Query 885 ATCTGAGTCTGATGGAAGAAGGTAATCAGATGAGAAAAGAGAGCACTACTTCGACAAATG 944
||| ||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||
Sbjct 693 ATCCGAGTCTGATGGAAGAAGGTTATCAGATGAGAAAAGAGAGCACAACTTGGACAAATG 752
Query 945 A 945
|
Sbjct 753 A 753
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45213779562
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5