BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G01120.2
Length=1457
Score E
Sequences producing significant alignments: (Bits) Value
Ahg322461 jgi|Araly1|322461|fgenesh1_pm.C_scaffold_5000005 1293 0.0
> Ahg322461 jgi|Araly1|322461|fgenesh1_pm.C_scaffold_5000005
Length=1365
Score = 1293 bits (700), Expect = 0.0
Identities = 831/890 (93%), Gaps = 28/890 (3%)
Strand=Plus/Plus
Query 494 GGAAAGCAGCGGTTGCTATACAGTKTGCTGGACGATGCTATGCAATCTGTAACCTCACAA 553
|||||||||||||||||||||||| |||| | |||||||||||||||||||| ||||||
Sbjct 499 GGAAAGCAGCGGTTGCTATACAGTTTGCT-G--GATGCTATGCAATCTGTAACATCACAA 555
Query 554 GCTGTTGTCGTCGGTATTAGTTCTCGACTGGACGCCGACCAACTTCTGGAGAAAAGAGTG 613
||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 556 GCTGTTGTCATCGGTATTAGTTCTCGACTGGACGCTGACCAGCTTCTGGAGAAAAGAGTG 615
Query 614 AGATCTCGCTTTTCACACAGAAAATTTTTGTTTCTTCCTCCTTCCAGGGAAGAACTTGAC 673
|||||||||||||||||||||||| || ||||||||||||| |||||||| |||||||||
Sbjct 616 AGATCTCGCTTTTCACACAGAAAAATTCTGTTTCTTCCTCCATCCAGGGACGAACTTGAC 675
Query 674 GGTTTGTTTGTACACCTGCTGTCTCTACCAGCAGACTCAGGCTTCCCCAGTGGATATGTT 733
|||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 676 GGTTTGTTGGAACACCTGCTGTCTCTACCAGCAGACTCAAGCTTCCCCAGTGGATATGTT 735
Query 734 TCTCGGTTCAATGATAAGATTAAGAATTTAACATCAGACACGAGATTTAAAGACATACTT 793
||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 736 TCTCGGTTCAATGATAAGATTAAGAATATAACATCAGACAGGAGATTTAAAGACATACTT 795
Query 794 AAGACATTGTTTAATGCTAATTCTACTGTGAACAGTTTCCTGAAGTTTATTCTATCTCTT 853
|||||||| ||||||||| |||||||||||||||||||| ||||| | ||
Sbjct 796 AAGACATTTTTTAATGCTCATTCTACTGTGAACAGTTTCTTGAAG-----------T-TT 843
Query 854 GATGTTAGATTCTGCGCTGTTTCTTTAATGAATTTGGAATCTGGCCTCCTCTCTCTTGAG 913
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 844 -A---T--ATTCTGCGCTGTTTCTTTAATGAATTTGGAATCTGGCCTCCTCTCTCTTGAG 897
Query 914 AACTTCAAAGCAGCACTTTCAAGTATGCAAAGGCAACCAAAGTTGGAAGCCGTTAGAGAT 973
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 898 AACTTCAAAGCAGCACTTTCAAGTATGCAAAGGCAACCAAAGCTGGAAGCCGTTAGAGAT 957
Query 974 TGTTCCGTACTGGAGCTTTATCTTCTGGTCTGTATGAGGAGGTTAGAAGTGAAGGAGCAA 1033
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 958 TGTTCCGTACTGGAGCTTTATCTTCTGGTATGTATGAGGAGGTTAGAAGTGAAGGAGCAA 1017
Query 1034 AGCTCATACAACTTCATCAGTGTGATGAAAGAGTATAAGGCGATACACGATTCTTTTCAT 1093
||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1018 AGCTCATACAACTTCATTAGTGTAATGAAAGAGTACAAGGCGATACACGATTCTTTTCAA 1077
Query 1094 ACCTCAGACTACTACGCACAAAATGTCTGCCTAAGGGCATTTGAGCACCTGAGAGAGCGA 1153
||||| |||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 1078 ACCTCGGACTACTACGCACAAAATGTCTGCATAAGGGGATTTGAGCACCTGAGAGAGCGA 1137
Query 1154 CAAGTTATATGCTATGCAGAGAATAGAGGACAGTCTCAGACAGGAGAGTACCGTTTGCA- 1212
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1138 CAAGTTATATGCTATGCAGAGAATAGAGGACAGTCTCAGACAGGAGAGTACCGTCC-CAT 1196
Query 1213 GAAGCTTTTGATATCAGCCTCTGAGCTTCATCAGGGAATGAGATCTCATGCTTGTTGCCC 1272
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1197 GAAGCTTTTGATATCAGCCTCTGAGCTTCATCAGGGAATGAGATCTCATGCGTGTTGCCC 1256
Query 1273 CG----CCATCCTTCTCAAGTTATTGGACCATTGATCTCTGTGTTTTTGTCCCTTGGGAA 1328
|| |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1257 CGTAAGCCATCCTTCTCAAGTTATTGGACCATTGATCTCTCTGTTTTTGTCCCTTGGGAA 1316
Query 1329 TAAGACAAGTCTCTCAAGGCCCTGTGATATGTATGTTTATTTCATGGTAA 1378
||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1317 TAAGACA-GTCTCTCAAGGTCCTGTGATATGTATGTTTATTTCATGGTAA 1365
Score = 723 bits (391), Expect = 0.0
Identities = 440/466 (94%), Gaps = 0/466 (0%)
Strand=Plus/Plus
Query 29 ATGGGCAAAGAGACTCCGGCGGAGAAATCCCTAAATCTGATTCGCGGGAGACTCTGTGAT 88
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 ATGGGCAAAGAGATTCCGGCGGAGAAATCCCTAAATCTGATTCGCGGGAGACTCTGCGAT 60
Query 89 CCTAGTTATGTCTTCAGACCTCTTTCCGCTTCGTCAGATAGCAATTACAGTAAATTGAAG 148
||||||| | |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 61 CCTAGTTTTATCTTCAGACCTCTTTCCGCTTCGTCAGACAGCAATTACAGTAAATTGAAG 120
Query 149 TTCATTGTATCAACCTCTATCACGGAGGGATGCAACAACTCGATGTTGCTTCTCGGCCCT 208
|||||||||||||||||||||||||||||||||||||| || || |||||||||||||||
Sbjct 121 TTCATTGTATCAACCTCTATCACGGAGGGATGCAACAATTCCATCTTGCTTCTCGGCCCT 180
Query 209 CGCGGCTCTGGCAAAGCTGCTGTCTTGGATCTCGKTSTAGGTGAKTTATTGGAGCAGTTT 268
||||||||||||||| |||||||||||||||||| | ||||||| |||||||||||||||
Sbjct 181 CGCGGCTCTGGCAAAACTGCTGTCTTGGATCTCGTTGTAGGTGATTTATTGGAGCAGTTT 240
Query 269 CCTGATTCAGTATCAGTAATCAGATTGAATGGACTCTTGCATAGTGATGATAATTGTGCC 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 241 CCTGATTCAGTATCAGTAATCAGATTGAATGGACTCTTGCATAGTGATGATAATTCTGCT 300
Query 329 TTTAAGGAAATTGCCAAACAGTTGTGCATGGAACACCACCTACTATTCTCCAAAATGGCA 388
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 301 TTTAAGGAAATTGCCAGACAGTTGTGCATGGAACACCACCTACTATTCTCCAAGATGGCA 360
Query 389 TCATTCGATGACAATTCACAATTCATTATAGCCATGTTGCGGGCATGTGGACTAGCACAT 448
||||||||||| ||||| || ||||| |||||||||||||||| ||| ||||||||||||
Sbjct 361 TCATTCGATGAGAATTCGCACTTCATAATAGCCATGTTGCGGGAATGCGGACTAGCACAT 420
Query 449 AAGACTATCATCTTTGTGCTTGATGAATTTGACATGTTTGCACAGG 494
|| || ||||||||||||||||| ||||||||||||||||| ||||
Sbjct 421 AAAACAATCATCTTTGTGCTTGACGAATTTGACATGTTTGCTCAGG 466
Lambda K H
1.34 0.622 1.13
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54507140595
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5